Wall clock time and date at job start Tue Mar 31 2020 23:55:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86797 * 119.99803 * 2 1 4 4 H 1.48504 * 109.47225 * 272.89867 * 3 2 1 5 5 H 1.48501 * 109.47529 * 32.89708 * 3 2 1 6 6 H 1.48503 * 109.47265 * 152.90182 * 3 2 1 7 7 C 1.38809 * 119.99885 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00368 * 339.36054 * 7 2 1 9 9 N 1.36940 * 119.99760 * 159.36601 * 7 2 1 10 10 C 1.46932 * 120.62720 * 332.59853 * 9 7 2 11 11 C 1.53188 * 108.77394 * 233.63217 * 10 9 7 12 12 C 1.53040 * 109.31679 * 305.36799 * 11 10 9 13 13 C 1.53046 * 109.53844 * 61.36421 * 12 11 10 14 14 H 1.08993 * 109.52239 * 58.60362 * 13 12 11 15 15 N 1.46499 * 109.50052 * 178.68884 * 13 12 11 16 16 C 1.34769 * 119.99944 * 204.84013 * 15 13 12 17 17 O 1.21549 * 120.00349 * 359.97438 * 16 15 13 18 18 C 1.47931 * 119.99810 * 179.97438 * 16 15 13 19 19 C 1.38261 * 119.24146 * 180.02562 * 18 16 15 20 20 C 1.40692 * 118.65230 * 179.97438 * 19 18 16 21 21 C 1.40240 * 122.05849 * 180.02562 * 20 19 18 22 22 C 1.36311 * 119.48024 * 179.97438 * 21 20 19 23 23 C 1.39242 * 120.94415 * 0.02562 * 22 21 20 24 24 C 1.36357 * 121.06309 * 0.02562 * 23 22 21 25 25 C 1.40041 * 119.59079 * 359.70505 * 24 23 22 26 26 C 1.41347 * 121.85748 * 179.76970 * 25 24 23 27 27 O 1.35494 * 119.95148 * 0.54560 * 26 25 24 28 28 N 1.31384 * 120.10034 * 180.26370 * 26 25 24 29 29 C 1.46921 * 120.63295 * 152.62580 * 9 7 2 30 30 H 0.96997 * 119.99911 * 0.02562 * 1 2 3 31 31 H 1.08999 * 109.59024 * 353.42088 * 10 9 7 32 32 H 1.08994 * 109.58673 * 113.70466 * 10 9 7 33 33 H 1.09003 * 109.49828 * 65.31593 * 11 10 9 34 34 H 1.08999 * 109.50020 * 185.41762 * 11 10 9 35 35 H 1.09007 * 109.46032 * 301.34818 * 12 11 10 36 36 H 1.08992 * 109.46556 * 181.38599 * 12 11 10 37 37 H 0.97007 * 119.99745 * 24.83504 * 15 13 12 38 38 H 1.08003 * 120.67556 * 359.97438 * 19 18 16 39 39 H 1.07995 * 120.25626 * 359.95818 * 21 20 19 40 40 H 1.08000 * 119.52241 * 180.02562 * 22 21 20 41 41 H 1.08005 * 119.47132 * 180.02562 * 23 22 21 42 42 H 1.07999 * 120.20556 * 180.02562 * 24 23 22 43 43 H 0.96704 * 114.00293 * 269.72508 * 27 26 25 44 44 H 1.09000 * 109.58710 * 6.57835 * 29 9 7 45 45 H 1.09000 * 109.58656 * 246.15386 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4363 2.0819 -1.3983 5 1 1.4796 2.6343 0.7604 6 1 3.5771 1.4233 0.6378 7 6 2.0102 -1.2021 0.0005 8 1 1.5223 -2.1073 0.3306 9 7 3.3138 -1.2403 -0.4174 10 6 3.8175 -0.2596 -1.3886 11 6 4.4618 -1.0102 -2.5582 12 6 5.5284 -1.9666 -2.0199 13 6 4.8746 -2.9913 -1.0900 14 1 4.1079 -3.5412 -1.6355 15 7 5.8911 -3.9255 -0.5998 16 6 5.5334 -5.1619 -0.2004 17 8 4.3673 -5.5019 -0.2464 18 6 6.5599 -6.1054 0.2940 19 6 6.1756 -7.3701 0.6992 20 6 7.1622 -8.2576 1.1667 21 6 6.8524 -9.5566 1.5948 22 6 7.8502 -10.3729 2.0375 23 6 9.1716 -9.9351 2.0710 24 6 9.5068 -8.6779 1.6630 25 6 8.5089 -7.8132 1.1966 26 6 8.8018 -6.4989 0.7666 27 8 10.0796 -6.0489 0.7888 28 7 7.8376 -5.7149 0.3401 29 6 4.2350 -2.2631 0.0964 30 1 -0.4850 0.8400 -0.0004 31 1 2.9910 0.3489 -1.7558 32 1 4.5584 0.3810 -0.9103 33 1 3.6989 -1.5785 -3.0903 34 1 4.9244 -0.2953 -3.2387 35 1 6.2779 -1.4005 -1.4668 36 1 6.0056 -2.4840 -2.8521 37 1 6.8217 -3.6540 -0.5628 38 1 5.1391 -7.6708 0.6578 39 1 5.8311 -9.9073 1.5741 40 1 7.6124 -11.3736 2.3669 41 1 9.9435 -10.6020 2.4259 42 1 10.5362 -8.3528 1.6945 43 1 10.3307 -5.6185 1.6175 44 1 3.6839 -2.9766 0.7090 45 1 5.0117 -1.7875 0.6952 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001007496776.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:55:59 Heat of formation + Delta-G solvation = -21.109523 kcal Electronic energy + Delta-G solvation = -28859.608298 eV Core-core repulsion = 24841.780576 eV Total energy + Delta-G solvation = -4017.827722 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.22288 -40.93010 -39.27652 -38.91899 -37.60120 -36.08196 -34.33507 -33.33395 -32.72873 -32.34641 -31.13264 -30.19180 -27.25203 -26.03917 -25.06773 -24.01427 -23.76235 -23.18492 -21.95859 -21.34901 -19.91568 -19.17479 -18.79360 -18.64732 -17.78550 -17.32978 -16.99425 -16.83481 -16.56177 -16.19061 -15.71920 -15.54330 -15.46794 -15.08642 -15.00179 -14.90798 -14.56698 -14.46858 -14.18176 -14.08163 -13.74887 -13.33655 -13.04864 -12.91958 -12.83275 -12.80969 -12.61679 -12.46339 -12.18261 -11.89423 -11.74304 -11.56964 -11.46043 -11.36755 -11.16152 -10.83229 -10.58495 -10.28585 -10.16454 -9.12288 -8.94954 -8.18852 -5.53124 -0.92556 -0.41737 0.74874 1.28923 1.29451 1.41035 1.51599 1.92714 2.21353 2.37558 2.40183 2.91886 3.03015 3.22636 3.38406 3.51222 3.64274 3.78347 3.79314 3.96768 3.99696 4.07234 4.23470 4.24819 4.29375 4.37369 4.39994 4.61056 4.61929 4.64238 4.67242 4.89593 4.90427 4.96492 4.99311 5.00939 5.05604 5.16183 5.30766 5.33137 5.36894 5.43994 5.48938 5.82064 5.82412 6.08898 6.30766 6.54361 6.71736 6.86892 7.11114 7.57346 7.95755 9.01409 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.021698 B = 0.002399 C = 0.002273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.131160 B =11668.789846 C =12315.110208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.958 5.958 2 C -0.037 4.037 3 Si 0.958 3.042 4 H -0.265 1.265 5 H -0.309 1.309 6 H -0.259 1.259 7 C -0.256 4.256 8 H 0.037 0.963 9 N -0.617 5.617 10 C 0.113 3.887 11 C -0.125 4.125 12 C -0.106 4.106 13 C 0.135 3.865 14 H 0.059 0.941 15 N -0.689 5.689 16 C 0.564 3.436 17 O -0.572 6.572 18 C 0.059 3.941 19 C -0.094 4.094 20 C -0.040 4.040 21 C -0.116 4.116 22 C -0.088 4.088 23 C -0.103 4.103 24 C -0.088 4.088 25 C -0.118 4.118 26 C 0.358 3.642 27 O -0.473 6.473 28 N -0.505 5.505 29 C 0.147 3.853 30 H 0.264 0.736 31 H 0.052 0.948 32 H 0.044 0.956 33 H 0.051 0.949 34 H 0.100 0.900 35 H 0.085 0.915 36 H 0.088 0.912 37 H 0.419 0.581 38 H 0.150 0.850 39 H 0.150 0.850 40 H 0.162 0.838 41 H 0.165 0.835 42 H 0.161 0.839 43 H 0.426 0.574 44 H 0.032 0.968 45 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.151 -19.797 3.094 34.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.231 4.231 3 Si 0.786 3.214 4 H -0.192 1.192 5 H -0.238 1.238 6 H -0.183 1.183 7 C -0.386 4.386 8 H 0.055 0.945 9 N -0.342 5.342 10 C -0.011 4.011 11 C -0.164 4.164 12 C -0.144 4.144 13 C 0.029 3.971 14 H 0.077 0.923 15 N -0.340 5.340 16 C 0.350 3.650 17 O -0.451 6.451 18 C -0.065 4.065 19 C -0.116 4.116 20 C -0.045 4.045 21 C -0.134 4.134 22 C -0.107 4.107 23 C -0.121 4.121 24 C -0.107 4.107 25 C -0.121 4.121 26 C 0.162 3.838 27 O -0.283 6.283 28 N -0.227 5.227 29 C 0.021 3.979 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.062 0.938 33 H 0.070 0.930 34 H 0.118 0.882 35 H 0.104 0.896 36 H 0.106 0.894 37 H 0.257 0.743 38 H 0.168 0.832 39 H 0.167 0.833 40 H 0.180 0.820 41 H 0.182 0.818 42 H 0.178 0.822 43 H 0.289 0.711 44 H 0.050 0.950 45 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 27.325 -19.263 2.210 33.506 hybrid contribution -0.593 0.495 0.843 1.143 sum 26.732 -18.768 3.053 32.805 Atomic orbital electron populations 1.69995 1.07641 1.27470 1.55282 1.25991 0.95963 1.01406 0.99773 0.85742 0.78591 0.79070 0.78023 1.19156 1.23823 1.18296 1.18775 0.86822 0.93417 1.39569 0.94525 1.44366 1.07595 1.34223 1.47977 1.21567 0.97205 0.91976 0.90381 1.21918 0.97968 0.98943 0.97577 1.21647 0.97945 0.96017 0.98806 1.21396 0.90173 0.89873 0.95648 0.92270 1.45746 1.12253 1.12252 1.63724 1.18263 0.87083 0.82383 0.77288 1.90819 1.19941 1.77921 1.56441 1.20187 0.89298 0.93775 1.03260 1.22301 1.01428 0.92292 0.95567 1.18254 0.91788 0.95745 0.98683 1.21324 1.01924 0.91417 0.98718 1.21507 0.92474 1.00995 0.95700 1.21510 0.97432 0.95939 0.97236 1.21262 0.99406 0.93564 0.96490 1.19249 0.94607 0.95809 1.02460 1.19262 0.84613 0.87899 0.92018 1.84686 1.20325 1.78783 1.44549 1.66711 0.99836 1.39112 1.17073 1.21238 0.92125 0.90275 0.94303 0.92764 0.92950 0.93809 0.93034 0.88185 0.89614 0.89366 0.74291 0.83199 0.83266 0.82016 0.81769 0.82163 0.71136 0.94959 0.94158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -62.91 13.97 21.65 0.30 -62.61 16 2 C -0.04 -2.25 5.23 84.86 0.44 -1.81 16 3 Si 0.96 47.70 24.34 68.60 1.67 49.37 16 4 H -0.27 -12.17 6.62 99.48 0.66 -11.51 16 5 H -0.31 -15.58 7.11 99.48 0.71 -14.87 16 6 H -0.26 -12.22 6.64 99.48 0.66 -11.56 16 7 C -0.26 -15.75 10.03 84.03 0.84 -14.91 16 8 H 0.04 2.54 8.06 -2.91 -0.02 2.52 16 9 N -0.62 -31.20 2.77 -699.11 -1.94 -33.14 16 10 C 0.11 4.81 4.21 86.36 0.36 5.17 16 11 C -0.12 -4.11 6.08 30.67 0.19 -3.92 16 12 C -0.11 -3.04 5.35 30.62 0.16 -2.87 16 13 C 0.14 4.91 2.60 45.07 0.12 5.03 16 14 H 0.06 2.55 7.58 -2.39 -0.02 2.54 16 15 N -0.69 -21.67 5.07 -444.96 -2.26 -23.93 16 16 C 0.56 19.72 7.76 86.81 0.67 20.39 16 17 O -0.57 -24.67 15.93 -3.87 -0.06 -24.73 16 18 C 0.06 1.70 6.73 41.44 0.28 1.98 16 19 C -0.09 -2.38 9.41 22.88 0.22 -2.16 16 20 C -0.04 -0.78 5.74 -21.30 -0.12 -0.91 16 21 C -0.12 -1.55 9.81 22.31 0.22 -1.33 16 22 C -0.09 -0.71 9.95 22.06 0.22 -0.49 16 23 C -0.10 -0.70 9.95 22.07 0.22 -0.48 16 24 C -0.09 -0.89 9.58 22.27 0.21 -0.68 16 25 C -0.12 -2.03 5.76 -21.19 -0.12 -2.15 16 26 C 0.36 6.95 7.80 85.52 0.67 7.62 16 27 O -0.47 -6.22 12.83 -87.95 -1.13 -7.35 16 28 N -0.51 -12.63 9.47 -297.68 -2.82 -15.45 16 29 C 0.15 6.48 6.09 86.36 0.53 7.00 16 30 H 0.26 16.25 8.31 -92.71 -0.77 15.48 16 31 H 0.05 2.46 4.50 -2.39 -0.01 2.45 16 32 H 0.04 1.73 7.07 -2.39 -0.02 1.72 16 33 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 34 H 0.10 2.56 8.14 -2.39 -0.02 2.54 16 35 H 0.09 2.12 8.14 -2.38 -0.02 2.10 16 36 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 37 H 0.42 10.93 7.90 -92.70 -0.73 10.20 16 38 H 0.15 3.82 7.59 -2.91 -0.02 3.79 16 39 H 0.15 1.56 8.06 -2.91 -0.02 1.54 16 40 H 0.16 0.31 8.06 -2.91 -0.02 0.29 16 41 H 0.16 0.04 8.06 -2.91 -0.02 0.01 16 42 H 0.16 0.85 7.65 -2.91 -0.02 0.82 16 43 H 0.43 1.28 9.06 -74.05 -0.67 0.61 16 44 H 0.03 1.61 7.93 -2.39 -0.02 1.59 16 45 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 Total: -1.00 -85.01 367.36 -1.57 -86.58 By element: Atomic # 1 Polarization: 16.24 SS G_CDS: -0.45 Total: 15.79 kcal Atomic # 6 Polarization: 10.37 SS G_CDS: 5.11 Total: 15.48 kcal Atomic # 7 Polarization: -128.42 SS G_CDS: -6.71 Total: -135.12 kcal Atomic # 8 Polarization: -30.90 SS G_CDS: -1.19 Total: -32.09 kcal Atomic # 14 Polarization: 47.70 SS G_CDS: 1.67 Total: 49.37 kcal Total: -85.01 -1.57 -86.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007496776.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.466 kcal (2) G-P(sol) polarization free energy of solvation -85.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds