Wall clock time and date at job start Wed Apr 1 2020 00:14:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86798 * 119.99977 * 2 1 4 4 H 1.48497 * 109.46812 * 270.00210 * 3 2 1 5 5 H 1.48507 * 109.46940 * 29.99858 * 3 2 1 6 6 H 1.48497 * 109.47456 * 149.99774 * 3 2 1 7 7 C 1.38813 * 119.99784 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99438 * 197.35250 * 7 2 1 9 9 N 1.36936 * 120.00195 * 17.36157 * 7 2 1 10 10 C 1.46931 * 120.63067 * 27.67060 * 9 7 2 11 11 C 1.53187 * 108.77328 * 126.41445 * 10 9 7 12 12 C 1.53036 * 109.34322 * 54.61625 * 11 10 9 13 13 C 1.53035 * 109.54208 * 298.68633 * 12 11 10 14 14 H 1.09008 * 109.46838 * 301.36435 * 13 12 11 15 15 N 1.46494 * 109.52558 * 181.29577 * 13 12 11 16 16 C 1.34783 * 119.99847 * 155.11155 * 15 13 12 17 17 O 1.21486 * 120.00023 * 359.97438 * 16 15 13 18 18 C 1.48346 * 119.99677 * 180.02562 * 16 15 13 19 19 C 1.41921 * 126.83913 * 180.02562 * 18 16 15 20 20 C 1.36717 * 103.81269 * 179.97438 * 19 18 16 21 21 C 1.47861 * 126.81664 * 179.97438 * 20 19 18 22 22 C 1.39556 * 120.13910 * 359.72546 * 21 20 19 23 23 C 1.37966 * 119.84827 * 179.76964 * 22 21 20 24 24 C 1.38356 * 120.14518 * 0.50671 * 23 22 21 25 25 C 1.38350 * 120.28832 * 359.74466 * 24 23 22 26 26 C 1.37964 * 120.14504 * 0.02562 * 25 24 23 27 27 O 1.34463 * 106.36589 * 0.02562 * 20 19 18 28 28 N 1.20880 * 111.73760 * 359.70447 * 27 20 19 29 29 C 1.46924 * 120.62987 * 207.68989 * 9 7 2 30 30 H 0.97006 * 120.00403 * 0.02562 * 1 2 3 31 31 H 1.09001 * 109.58722 * 6.62827 * 10 9 7 32 32 H 1.09000 * 109.69982 * 246.27127 * 10 9 7 33 33 H 1.09003 * 109.49294 * 174.58737 * 11 10 9 34 34 H 1.09000 * 109.49839 * 294.64876 * 11 10 9 35 35 H 1.09004 * 109.45659 * 58.67099 * 12 11 10 36 36 H 1.09004 * 109.46253 * 178.62448 * 12 11 10 37 37 H 0.97001 * 120.00015 * 335.11127 * 15 13 12 38 38 H 1.07993 * 128.09619 * 359.97438 * 19 18 16 39 39 H 1.07997 * 120.07850 * 359.97438 * 22 21 20 40 40 H 1.08005 * 119.92518 * 180.25810 * 23 22 21 41 41 H 1.07996 * 119.85637 * 179.77018 * 24 23 22 42 42 H 1.08004 * 119.92946 * 180.02562 * 25 24 23 43 43 H 1.07998 * 120.07482 * 179.97438 * 26 25 24 44 44 H 1.08995 * 109.58607 * 353.37922 * 29 9 7 45 45 H 1.09010 * 109.58203 * 113.79897 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4403 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0533 -1.2233 0.2795 9 7 1.3723 -2.3612 -0.3528 10 6 0.2277 -2.3350 -1.2737 11 6 0.5005 -3.3056 -2.4270 12 6 0.8189 -4.6906 -1.8594 13 6 2.0741 -4.6104 -0.9876 14 1 2.9079 -4.2407 -1.5844 15 7 2.3962 -5.9423 -0.4694 16 6 3.6629 -6.2406 -0.1185 17 8 4.5376 -5.4051 -0.2324 18 6 3.9892 -7.5894 0.4057 19 6 5.2646 -8.0571 0.8166 20 6 5.0289 -9.3451 1.2098 21 6 6.0219 -10.3075 1.7334 22 6 7.3601 -9.9331 1.8624 23 6 8.2807 -10.8344 2.3561 24 6 7.8816 -12.1101 2.7131 25 6 6.5574 -12.4891 2.5827 26 6 5.6260 -11.5960 2.0948 27 8 3.7151 -9.5633 1.0248 28 7 3.1561 -8.5851 0.5867 29 6 1.8192 -3.6546 0.1821 30 1 -0.4851 0.8401 -0.0004 31 1 0.0985 -1.3268 -1.6674 32 1 -0.6758 -2.6397 -0.7456 33 1 -0.3803 -3.3679 -3.0661 34 1 1.3488 -2.9479 -3.0106 35 1 -0.0201 -5.0374 -1.2561 36 1 0.9894 -5.3887 -2.6791 37 1 1.6979 -6.6094 -0.3789 38 1 6.2021 -7.5209 0.8182 39 1 7.6738 -8.9392 1.5796 40 1 9.3159 -10.5446 2.4604 41 1 8.6068 -12.8130 3.0955 42 1 6.2522 -13.4863 2.8635 43 1 4.5927 -11.8931 1.9930 44 1 2.7399 -3.5171 0.7490 45 1 1.0467 -4.0684 0.8304 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001007868320.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:14:46 Heat of formation + Delta-G solvation = 53.470362 kcal Electronic energy + Delta-G solvation = -28209.580713 eV Core-core repulsion = 24194.987017 eV Total energy + Delta-G solvation = -4014.593696 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -46.22712 -41.10101 -40.00591 -39.06165 -36.10698 -35.31498 -34.49165 -33.97429 -32.39308 -31.90371 -30.71188 -30.36460 -27.30808 -26.26106 -24.84903 -24.04927 -23.90966 -23.02990 -22.87603 -21.44722 -20.83841 -19.42701 -18.99695 -18.76265 -18.04785 -17.45196 -17.13781 -16.73269 -16.39099 -16.25667 -15.87498 -15.75439 -15.31128 -15.23942 -14.90374 -14.85113 -14.35885 -14.28668 -14.22310 -14.10900 -13.93250 -13.48162 -13.07680 -12.92802 -12.77641 -12.65002 -12.27743 -12.17729 -12.00600 -11.96539 -11.88440 -11.72323 -11.67247 -11.40342 -11.38651 -11.36236 -10.66640 -10.30797 -9.91160 -9.41721 -8.74742 -7.93149 -5.39188 -0.50085 0.07366 0.45825 1.05899 1.43653 1.44956 1.54269 1.62009 1.78232 1.94109 2.47402 2.71982 2.87248 3.20883 3.26297 3.66847 3.71481 3.77327 3.95252 4.01301 4.02373 4.07153 4.11592 4.17873 4.32436 4.41072 4.48342 4.51893 4.63525 4.69355 4.73609 4.84923 4.94281 4.95028 5.01722 5.08175 5.11659 5.19780 5.31018 5.43921 5.49499 5.49888 5.57863 5.59991 5.72693 5.98479 6.22448 6.33651 6.79513 6.91724 7.09670 7.77792 8.28560 9.12787 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.021184 B = 0.002038 C = 0.001910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.443171 B =13737.105397 C =14655.236767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.045 4.045 3 Si 0.968 3.032 4 H -0.281 1.281 5 H -0.289 1.289 6 H -0.274 1.274 7 C -0.268 4.268 8 H 0.055 0.945 9 N -0.605 5.605 10 C 0.170 3.830 11 C -0.128 4.128 12 C -0.106 4.106 13 C 0.141 3.859 14 H 0.068 0.932 15 N -0.693 5.693 16 C 0.594 3.406 17 O -0.554 6.554 18 C -0.034 4.034 19 C -0.178 4.178 20 C 0.027 3.973 21 C -0.048 4.048 22 C -0.097 4.097 23 C -0.123 4.123 24 C -0.102 4.102 25 C -0.122 4.122 26 C -0.100 4.100 27 O 0.137 5.863 28 N -0.336 5.336 29 C 0.144 3.856 30 H 0.253 0.747 31 H 0.058 0.942 32 H 0.005 0.995 33 H 0.087 0.913 34 H 0.051 0.949 35 H 0.074 0.926 36 H 0.087 0.913 37 H 0.415 0.585 38 H 0.195 0.805 39 H 0.137 0.863 40 H 0.152 0.848 41 H 0.153 0.847 42 H 0.153 0.847 43 H 0.140 0.860 44 H 0.033 0.967 45 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.664 -29.178 2.283 31.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.241 4.241 3 Si 0.796 3.204 4 H -0.207 1.207 5 H -0.215 1.215 6 H -0.199 1.199 7 C -0.399 4.399 8 H 0.073 0.927 9 N -0.329 5.329 10 C 0.045 3.955 11 C -0.167 4.167 12 C -0.144 4.144 13 C 0.035 3.965 14 H 0.087 0.913 15 N -0.345 5.345 16 C 0.378 3.622 17 O -0.431 6.431 18 C -0.191 4.191 19 C -0.201 4.201 20 C -0.036 4.036 21 C -0.049 4.049 22 C -0.115 4.115 23 C -0.141 4.141 24 C -0.120 4.120 25 C -0.140 4.140 26 C -0.118 4.118 27 O 0.058 5.942 28 N -0.035 5.035 29 C 0.017 3.983 30 H 0.062 0.938 31 H 0.076 0.924 32 H 0.023 0.977 33 H 0.105 0.895 34 H 0.070 0.930 35 H 0.092 0.908 36 H 0.106 0.894 37 H 0.252 0.748 38 H 0.212 0.788 39 H 0.155 0.845 40 H 0.169 0.831 41 H 0.171 0.829 42 H 0.171 0.829 43 H 0.158 0.842 44 H 0.052 0.948 45 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 11.809 -28.464 1.963 30.879 hybrid contribution 0.497 1.417 0.281 1.528 sum 12.306 -27.047 2.244 29.799 Atomic orbital electron populations 1.70175 1.06413 1.26077 1.54791 1.25763 0.96170 1.01336 1.00839 0.85261 0.77955 0.79382 0.77816 1.20733 1.21545 1.19931 1.19415 0.92671 0.86190 1.41583 0.92675 1.44225 1.36012 1.01379 1.51307 1.20745 0.87484 0.98323 0.88947 1.22012 1.01640 0.94793 0.98302 1.21630 0.95623 0.98096 0.99024 1.21442 0.98612 0.80809 0.95653 0.91343 1.45837 1.08947 1.15582 1.64091 1.17161 0.83147 0.84483 0.77374 1.90811 1.48227 1.48973 1.55088 1.23229 0.93034 0.95598 1.07242 1.22773 0.99266 0.94190 1.03832 1.22756 0.84201 0.94965 1.01655 1.17701 0.90692 0.92476 1.04045 1.21385 0.90905 1.01087 0.98156 1.21425 1.00574 0.93616 0.98447 1.21770 0.96676 0.96547 0.96976 1.21456 0.93101 1.00601 0.98858 1.21523 1.01379 0.91792 0.97131 1.84816 1.19489 1.30941 1.58949 1.74115 1.21129 0.94975 1.13265 1.21200 0.96643 0.86622 0.93858 0.93809 0.92401 0.97724 0.89487 0.93002 0.90765 0.89438 0.74830 0.78828 0.84517 0.83065 0.82949 0.82947 0.84215 0.94785 0.96332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.77 11.19 21.65 0.24 -55.53 16 2 C -0.05 -2.62 4.91 84.86 0.42 -2.20 16 3 Si 0.97 46.60 29.59 68.60 2.03 48.63 16 4 H -0.28 -13.17 7.11 99.48 0.71 -12.47 16 5 H -0.29 -13.73 7.11 99.48 0.71 -13.03 16 6 H -0.27 -12.90 7.11 99.48 0.71 -12.19 16 7 C -0.27 -15.75 9.59 84.03 0.81 -14.95 16 8 H 0.06 3.29 7.89 -2.91 -0.02 3.26 16 9 N -0.61 -32.17 3.00 -699.10 -2.09 -34.26 16 10 C 0.17 8.27 5.31 86.36 0.46 8.73 16 11 C -0.13 -4.67 6.08 30.67 0.19 -4.49 16 12 C -0.11 -3.31 5.36 30.62 0.16 -3.14 16 13 C 0.14 5.21 2.60 45.07 0.12 5.33 16 14 H 0.07 2.88 7.58 -2.38 -0.02 2.86 16 15 N -0.69 -21.90 5.08 -444.57 -2.26 -24.16 16 16 C 0.59 20.29 7.81 86.93 0.68 20.97 16 17 O -0.55 -23.00 16.61 -3.67 -0.06 -23.06 16 18 C -0.03 -0.96 7.18 42.86 0.31 -0.65 16 19 C -0.18 -4.13 10.34 22.83 0.24 -3.89 16 20 C 0.03 0.53 7.15 24.46 0.18 0.71 16 21 C -0.05 -0.73 5.87 -20.09 -0.12 -0.85 16 22 C -0.10 -1.21 9.58 22.52 0.22 -1.00 16 23 C -0.12 -1.07 10.03 22.23 0.22 -0.85 16 24 C -0.10 -0.72 10.04 22.32 0.22 -0.49 16 25 C -0.12 -0.99 10.03 22.23 0.22 -0.77 16 26 C -0.10 -1.19 9.73 22.52 0.22 -0.97 16 27 O 0.14 2.98 11.01 67.61 0.74 3.72 16 28 N -0.34 -8.62 11.81 -49.00 -0.58 -9.20 16 29 C 0.14 6.63 6.09 86.36 0.53 7.15 16 30 H 0.25 14.57 8.31 -92.70 -0.77 13.80 16 31 H 0.06 3.17 6.04 -2.39 -0.01 3.16 16 32 H 0.00 0.24 8.14 -2.39 -0.02 0.22 16 33 H 0.09 2.66 8.14 -2.39 -0.02 2.64 16 34 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 35 H 0.07 2.17 8.14 -2.38 -0.02 2.15 16 36 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 37 H 0.41 10.90 8.36 -92.71 -0.77 10.13 16 38 H 0.19 3.87 7.46 -2.91 -0.02 3.85 16 39 H 0.14 1.47 7.15 -2.91 -0.02 1.45 16 40 H 0.15 0.64 8.06 -2.91 -0.02 0.62 16 41 H 0.15 0.27 8.06 -2.91 -0.02 0.25 16 42 H 0.15 0.48 8.06 -2.91 -0.02 0.46 16 43 H 0.14 1.37 7.96 -2.91 -0.02 1.34 16 44 H 0.03 1.69 7.93 -2.39 -0.02 1.67 16 45 H 0.02 0.86 8.14 -2.38 -0.02 0.84 16 Total: -1.00 -73.37 379.02 3.33 -70.04 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: 0.25 Total: 15.17 kcal Atomic # 6 Polarization: 3.59 SS G_CDS: 5.06 Total: 8.65 kcal Atomic # 7 Polarization: -118.46 SS G_CDS: -4.69 Total: -123.15 kcal Atomic # 8 Polarization: -20.03 SS G_CDS: 0.68 Total: -19.34 kcal Atomic # 14 Polarization: 46.60 SS G_CDS: 2.03 Total: 48.63 kcal Total: -73.37 3.33 -70.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007868320.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.506 kcal (2) G-P(sol) polarization free energy of solvation -73.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.036 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds