Wall clock time and date at job start Wed Apr 1 2020 00:17:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86802 * 119.99918 * 2 1 4 4 H 1.48491 * 109.47291 * 240.00192 * 3 2 1 5 5 H 1.48507 * 109.46984 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47026 * 120.00057 * 3 2 1 7 7 C 1.38801 * 119.99935 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00076 * 180.02562 * 7 2 1 9 9 N 1.36944 * 120.00317 * 359.97438 * 7 2 1 10 10 C 1.47428 * 125.64345 * 13.82909 * 9 7 2 11 11 C 1.54912 * 104.82865 * 155.89514 * 10 9 7 12 12 C 1.55158 * 101.58158 * 37.00887 * 11 10 9 13 13 C 1.47013 * 125.64977 * 193.85610 * 9 7 2 14 14 H 1.08997 * 110.01581 * 300.52420 * 13 9 7 15 15 C 1.53007 * 109.88538 * 61.62216 * 13 9 7 16 16 N 1.46499 * 109.47363 * 183.33048 * 15 13 9 17 17 C 1.34776 * 120.00078 * 185.09399 * 16 15 13 18 18 O 1.21649 * 120.00007 * 0.02562 * 17 16 15 19 19 C 1.47127 * 119.99981 * 179.97438 * 17 16 15 20 20 N 1.35889 * 126.62005 * 5.01722 * 19 17 16 21 21 C 1.29924 * 108.74238 * 180.26803 * 20 19 17 22 22 O 1.34050 * 109.78094 * 359.74796 * 21 20 19 23 23 C 1.34768 * 108.23748 * 0.02562 * 22 21 20 24 24 C 1.47580 * 126.76144 * 179.97438 * 23 22 21 25 25 C 1.39692 * 120.15043 * 230.29018 * 24 23 22 26 26 C 1.37930 * 119.83632 * 180.23146 * 25 24 23 27 27 C 1.38368 * 120.15908 * 359.49057 * 26 25 24 28 28 C 1.38382 * 120.31606 * 0.25705 * 27 26 25 29 29 C 1.37927 * 120.15224 * 0.02562 * 28 27 26 30 30 H 0.97006 * 119.99601 * 359.97438 * 1 2 3 31 31 H 1.08991 * 110.36852 * 37.05728 * 10 9 7 32 32 H 1.09001 * 110.46007 * 274.77973 * 10 9 7 33 33 H 1.08999 * 111.00387 * 278.93691 * 11 10 9 34 34 H 1.08994 * 111.00509 * 155.08647 * 11 10 9 35 35 H 1.08997 * 110.71760 * 206.13298 * 12 11 10 36 36 H 1.08993 * 110.71925 * 82.86472 * 12 11 10 37 37 H 1.09001 * 109.47120 * 63.32691 * 15 13 9 38 38 H 1.08999 * 109.46655 * 303.32927 * 15 13 9 39 39 H 0.97009 * 119.99736 * 5.10220 * 16 15 13 40 40 H 1.08007 * 125.11243 * 179.77014 * 21 20 19 41 41 H 1.07999 * 120.07798 * 359.97438 * 25 24 23 42 42 H 1.08004 * 119.91937 * 179.77091 * 26 25 24 43 43 H 1.07997 * 119.84478 * 180.27435 * 27 26 25 44 44 H 1.08000 * 119.92472 * 180.02562 * 28 27 26 45 45 H 1.08004 * 120.07696 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1039 1.6965 -1.2124 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1116 -2.5504 -0.2864 11 6 -0.2571 -4.0158 -0.7671 12 6 0.7662 -4.7453 0.1429 13 6 1.9018 -3.7101 0.2850 14 1 2.6970 -3.9321 -0.4267 15 6 2.4567 -3.7390 1.7106 16 7 3.0989 -5.0322 1.9586 17 6 3.5712 -5.3257 3.1863 18 8 3.4639 -4.5169 4.0886 19 6 4.2156 -6.6246 3.4355 20 7 4.4902 -7.5835 2.5126 21 6 5.0560 -8.5887 3.1106 22 8 5.1757 -8.3285 4.4202 23 6 4.6617 -7.1052 4.6559 24 6 4.5841 -6.4157 5.9584 25 6 3.3757 -5.8627 6.3887 26 6 3.3117 -5.2156 7.6051 27 6 4.4382 -5.1226 8.4032 28 6 5.6374 -5.6727 7.9857 29 6 5.7174 -6.3176 6.7691 30 1 -0.4850 0.8401 0.0004 31 1 -0.4225 -1.8610 -1.0713 32 1 -0.7004 -2.3870 0.6162 33 1 0.0168 -4.1113 -1.8178 34 1 -1.2676 -4.3855 -0.5934 35 1 1.1302 -5.6537 -0.3371 36 1 0.3262 -4.9710 1.1142 37 1 1.6421 -3.5957 2.4206 38 1 3.1889 -2.9406 1.8317 39 1 3.1842 -5.6773 1.2391 40 1 5.3813 -9.4972 2.6256 41 1 2.4947 -5.9381 5.7686 42 1 2.3789 -4.7843 7.9375 43 1 4.3812 -4.6186 9.3567 44 1 6.5126 -5.5968 8.6138 45 1 6.6541 -6.7461 6.4442 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027917853.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:17:54 Heat of formation + Delta-G solvation = 17.668664 kcal Electronic energy + Delta-G solvation = -29008.874293 eV Core-core repulsion = 24992.728120 eV Total energy + Delta-G solvation = -4016.146174 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -44.39146 -40.75342 -39.93107 -39.23677 -36.04897 -35.70294 -34.40816 -33.50875 -31.94506 -31.50831 -30.70715 -29.69367 -26.91035 -26.22575 -24.67922 -24.38097 -23.39243 -22.39209 -22.03418 -21.49875 -21.14668 -19.57753 -18.69262 -18.14562 -17.85757 -17.41708 -17.13613 -16.71685 -16.43913 -16.28539 -15.88087 -15.77361 -15.64631 -15.19310 -14.79491 -14.68438 -14.46770 -14.36409 -13.97813 -13.71568 -13.66515 -13.44571 -13.02156 -12.88133 -12.66900 -12.49605 -12.46901 -12.13874 -12.06566 -11.91333 -11.89029 -11.75068 -11.50504 -11.43597 -11.34522 -10.68829 -10.58962 -10.14733 -9.90352 -9.44026 -8.88411 -7.88905 -5.26927 -0.48562 0.41551 0.49160 1.02469 1.43066 1.44602 1.47253 1.52905 2.04915 2.17803 2.48802 2.75896 3.05651 3.30084 3.45641 3.62799 3.78659 3.92469 3.93666 3.95399 3.99804 4.17301 4.23052 4.29762 4.37200 4.42270 4.49044 4.51733 4.63438 4.69694 4.87922 4.91515 4.96493 5.03588 5.10964 5.12933 5.17825 5.29491 5.39235 5.44749 5.45036 5.51497 5.52621 5.65176 5.76861 5.94298 6.21435 6.25668 6.57117 7.07533 7.09773 7.74496 8.40520 9.21528 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.011892 B = 0.002935 C = 0.002569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2353.904609 B = 9537.322689 C =10898.064501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.057 4.057 3 Si 0.972 3.028 4 H -0.274 1.274 5 H -0.291 1.291 6 H -0.283 1.283 7 C -0.243 4.243 8 H 0.075 0.925 9 N -0.609 5.609 10 C 0.174 3.826 11 C -0.133 4.133 12 C -0.113 4.113 13 C 0.149 3.851 14 H 0.048 0.952 15 C 0.132 3.868 16 N -0.693 5.693 17 C 0.587 3.413 18 O -0.560 6.560 19 C -0.075 4.075 20 N -0.487 5.487 21 C 0.206 3.794 22 O -0.189 6.189 23 C 0.076 3.924 24 C -0.055 4.055 25 C -0.066 4.066 26 C -0.135 4.135 27 C -0.099 4.099 28 C -0.127 4.127 29 C -0.096 4.096 30 H 0.248 0.752 31 H 0.039 0.961 32 H -0.008 1.008 33 H 0.071 0.929 34 H 0.083 0.917 35 H 0.099 0.901 36 H 0.063 0.937 37 H 0.043 0.957 38 H 0.037 0.963 39 H 0.415 0.585 40 H 0.313 0.687 41 H 0.106 0.894 42 H 0.139 0.861 43 H 0.155 0.845 44 H 0.160 0.840 45 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.665 -21.805 11.859 27.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.251 4.251 3 Si 0.800 3.200 4 H -0.199 1.199 5 H -0.217 1.217 6 H -0.209 1.209 7 C -0.372 4.372 8 H 0.093 0.907 9 N -0.334 5.334 10 C 0.049 3.951 11 C -0.171 4.171 12 C -0.150 4.150 13 C 0.042 3.958 14 H 0.066 0.934 15 C 0.006 3.994 16 N -0.344 5.344 17 C 0.373 3.627 18 O -0.439 6.439 19 C -0.194 4.194 20 N -0.215 5.215 21 C -0.021 4.021 22 O -0.075 6.075 23 C 0.019 3.981 24 C -0.055 4.055 25 C -0.084 4.084 26 C -0.153 4.153 27 C -0.116 4.116 28 C -0.144 4.144 29 C -0.114 4.114 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.011 0.989 33 H 0.089 0.911 34 H 0.102 0.898 35 H 0.118 0.882 36 H 0.082 0.918 37 H 0.062 0.938 38 H 0.055 0.945 39 H 0.252 0.748 40 H 0.328 0.672 41 H 0.124 0.876 42 H 0.157 0.843 43 H 0.173 0.827 44 H 0.177 0.823 45 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 10.384 -20.953 11.789 26.189 hybrid contribution 0.230 1.104 0.105 1.133 sum 10.614 -19.849 11.894 25.458 Atomic orbital electron populations 1.70138 1.06247 1.25507 1.57354 1.25664 0.96523 1.00933 1.01981 0.85253 0.77352 0.79186 0.78165 1.19948 1.21725 1.20889 1.19264 0.90722 0.83628 1.43629 0.90698 1.44732 1.06392 1.01809 1.80445 1.21281 0.83909 0.93437 0.96461 1.22878 0.99477 0.95391 0.99354 1.22575 0.95202 0.97276 0.99984 1.21293 0.95903 0.86849 0.91780 0.93400 1.21763 0.95513 0.83244 0.98910 1.45688 1.58370 1.18936 1.11387 1.17048 0.78100 0.84534 0.83030 1.90843 1.58885 1.49653 1.44519 1.21744 1.10037 0.97304 0.90360 1.70636 1.16394 1.01474 1.32990 1.29338 0.96072 1.00699 0.76027 1.84515 1.62310 1.29659 1.31062 1.21864 0.97007 0.84119 0.95109 1.17667 0.95985 1.01813 0.90064 1.21088 0.96090 0.95510 0.95758 1.21325 1.00560 0.99316 0.94056 1.21720 0.92165 0.97347 1.00408 1.21437 0.99217 0.97812 0.95945 1.21478 0.97104 0.98560 0.94215 0.94235 0.94224 0.98949 0.91075 0.89809 0.88214 0.91804 0.93847 0.94490 0.74765 0.67247 0.87576 0.84269 0.82707 0.82276 0.84093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.49 10.54 21.65 0.23 -57.26 16 2 C -0.06 -3.31 5.47 84.86 0.46 -2.85 16 3 Si 0.97 46.93 29.55 68.60 2.03 48.96 16 4 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 5 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 6 H -0.28 -13.48 7.11 99.48 0.71 -12.77 16 7 C -0.24 -13.86 9.75 84.03 0.82 -13.04 16 8 H 0.08 4.15 7.83 -2.91 -0.02 4.13 16 9 N -0.61 -31.39 3.13 -668.27 -2.09 -33.48 16 10 C 0.17 8.63 5.42 86.86 0.47 9.10 16 11 C -0.13 -4.75 7.09 31.99 0.23 -4.52 16 12 C -0.11 -3.67 6.15 31.78 0.20 -3.48 16 13 C 0.15 6.04 3.21 45.35 0.15 6.18 16 14 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 15 C 0.13 5.42 5.08 86.38 0.44 5.86 16 16 N -0.69 -23.35 5.34 -466.64 -2.49 -25.84 16 17 C 0.59 20.82 7.73 86.58 0.67 21.49 16 18 O -0.56 -23.29 13.71 -4.19 -0.06 -23.35 16 19 C -0.07 -2.16 7.04 40.92 0.29 -1.88 16 20 N -0.49 -11.12 11.04 -303.75 -3.35 -14.47 16 21 C 0.21 2.87 13.16 130.52 1.72 4.59 16 22 O -0.19 -3.57 10.75 -4.67 -0.05 -3.62 16 23 C 0.08 1.97 6.85 24.81 0.17 2.14 16 24 C -0.05 -1.43 5.29 -20.11 -0.11 -1.53 16 25 C -0.07 -1.82 7.70 22.55 0.17 -1.65 16 26 C -0.13 -3.05 10.03 22.23 0.22 -2.83 16 27 C -0.10 -1.75 10.04 22.34 0.22 -1.53 16 28 C -0.13 -2.13 10.03 22.23 0.22 -1.91 16 29 C -0.10 -1.97 9.79 22.54 0.22 -1.75 16 30 H 0.25 14.73 8.31 -92.70 -0.77 13.96 16 31 H 0.04 2.20 6.87 -2.39 -0.02 2.19 16 32 H -0.01 -0.42 8.08 -2.39 -0.02 -0.43 16 33 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 34 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 35 H 0.10 2.51 8.14 -2.39 -0.02 2.49 16 36 H 0.06 2.09 7.79 -2.39 -0.02 2.08 16 37 H 0.04 1.99 8.06 -2.39 -0.02 1.97 16 38 H 0.04 1.74 7.89 -2.39 -0.02 1.72 16 39 H 0.42 11.91 8.10 -92.70 -0.75 11.16 16 40 H 0.31 0.06 8.06 -2.91 -0.02 0.03 16 41 H 0.11 3.23 7.49 -2.91 -0.02 3.21 16 42 H 0.14 2.70 8.06 -2.91 -0.02 2.68 16 43 H 0.16 1.76 8.06 -2.91 -0.02 1.74 16 44 H 0.16 1.60 8.06 -2.91 -0.02 1.57 16 45 H 0.14 2.30 8.06 -2.91 -0.02 2.28 16 Total: -1.00 -78.13 378.48 1.04 -77.09 By element: Atomic # 1 Polarization: 19.31 SS G_CDS: 0.27 Total: 19.58 kcal Atomic # 6 Polarization: 5.84 SS G_CDS: 6.56 Total: 12.41 kcal Atomic # 7 Polarization: -123.35 SS G_CDS: -7.71 Total: -131.06 kcal Atomic # 8 Polarization: -26.86 SS G_CDS: -0.11 Total: -26.97 kcal Atomic # 14 Polarization: 46.93 SS G_CDS: 2.03 Total: 48.96 kcal Total: -78.13 1.04 -77.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027917853.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.755 kcal (2) G-P(sol) polarization free energy of solvation -78.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.086 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds