Wall clock time and date at job start Tue Mar 31 2020 23:55:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86792 * 120.00083 * 2 1 4 4 H 1.48501 * 109.47101 * 239.99684 * 3 2 1 5 5 H 1.48499 * 109.47458 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47252 * 120.00010 * 3 2 1 7 7 C 1.38813 * 119.99796 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00220 * 180.02562 * 7 2 1 9 9 N 1.36945 * 119.99936 * 359.97438 * 7 2 1 10 10 C 1.47420 * 125.64771 * 346.27197 * 9 7 2 11 11 C 1.54911 * 104.92483 * 204.09143 * 10 9 7 12 12 C 1.55271 * 101.52965 * 323.12655 * 11 10 9 13 13 C 1.47023 * 125.64364 * 166.29408 * 9 7 2 14 14 H 1.08997 * 109.88483 * 59.50817 * 13 9 7 15 15 C 1.52998 * 109.88399 * 298.33764 * 13 9 7 16 16 N 1.46504 * 109.46991 * 175.50576 * 15 13 9 17 17 C 1.34772 * 119.99676 * 184.66328 * 16 15 13 18 18 O 1.21546 * 120.00336 * 359.97438 * 17 16 15 19 19 C 1.47933 * 119.99916 * 179.97438 * 17 16 15 20 20 C 1.38256 * 119.24183 * 179.97438 * 19 17 16 21 21 C 1.40693 * 118.64694 * 179.97438 * 20 19 17 22 22 C 1.40242 * 122.05380 * 180.02562 * 21 20 19 23 23 C 1.36309 * 119.48098 * 180.02562 * 22 21 20 24 24 C 1.39253 * 120.94585 * 359.95464 * 23 22 21 25 25 C 1.36358 * 121.05828 * 0.05019 * 24 23 22 26 26 C 1.40041 * 119.58896 * 359.97230 * 25 24 23 27 27 C 1.41358 * 121.85595 * 180.02562 * 26 25 24 28 28 O 1.35493 * 119.94754 * 359.97438 * 27 26 25 29 29 N 1.31380 * 120.09754 * 179.72362 * 27 26 25 30 30 H 0.97000 * 119.99954 * 359.97438 * 1 2 3 31 31 H 1.08998 * 110.36856 * 322.98395 * 10 9 7 32 32 H 1.09001 * 110.36607 * 85.20222 * 10 9 7 33 33 H 1.09002 * 111.00372 * 81.12557 * 11 10 9 34 34 H 1.09005 * 111.00326 * 204.97200 * 11 10 9 35 35 H 1.08999 * 110.62880 * 277.00832 * 12 11 10 36 36 H 1.09000 * 110.75587 * 153.77639 * 12 11 10 37 37 H 1.09000 * 109.47113 * 295.50467 * 15 13 9 38 38 H 1.08998 * 109.47033 * 55.50592 * 15 13 9 39 39 H 0.96996 * 120.00160 * 4.66169 * 16 15 13 40 40 H 1.08001 * 120.67646 * 359.97438 * 20 19 17 41 41 H 1.08002 * 120.25375 * 359.97438 * 22 21 20 42 42 H 1.08006 * 119.52681 * 179.97438 * 23 22 21 43 43 H 1.07995 * 119.46941 * 180.02562 * 24 23 22 44 44 H 1.07996 * 120.20523 * 179.97438 * 25 24 23 45 45 H 0.96700 * 114.00265 * 90.00158 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0001 9 7 1.3254 -2.3881 -0.0005 10 6 -0.1119 -2.5503 0.2843 11 6 -0.2604 -4.0153 0.7655 12 6 0.7664 -4.7456 -0.1418 13 6 1.9022 -3.7105 -0.2841 14 1 2.6954 -3.9299 0.4304 15 6 2.4583 -3.7409 -1.7092 16 7 3.1251 -5.0237 -1.9458 17 6 3.7748 -5.2413 -3.1064 18 8 3.8072 -4.3735 -3.9568 19 6 4.4487 -6.5364 -3.3452 20 6 5.1102 -6.7431 -4.5415 21 6 5.7472 -7.9792 -4.7552 22 6 6.4386 -8.2650 -5.9414 23 6 7.0365 -9.4805 -6.0933 24 6 6.9710 -10.4413 -5.0874 25 6 6.3068 -10.1958 -3.9222 26 6 5.6800 -8.9581 -3.7310 27 6 4.9792 -8.6525 -2.5421 28 8 4.9002 -9.5703 -1.5485 29 7 4.4084 -7.4780 -2.3972 30 1 -0.4850 0.8401 0.0004 31 1 -0.4235 -1.8601 1.0682 32 1 -0.6985 -2.3866 -0.6197 33 1 0.0111 -4.1106 1.8169 34 1 -1.2711 -4.3837 0.5897 35 1 0.3274 -4.9724 -1.1133 36 1 1.1302 -5.6534 0.3396 37 1 1.6415 -3.6192 -2.4206 38 1 3.1751 -2.9297 -1.8368 39 1 3.0990 -5.7163 -1.2673 40 1 5.1374 -5.9714 -5.2966 41 1 6.4963 -7.5279 -6.7287 42 1 7.5688 -9.7015 -7.0066 43 1 7.4537 -11.3964 -5.2328 44 1 6.2643 -10.9511 -3.1514 45 1 5.6198 -9.5159 -0.9048 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027932461.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:55:31 Heat of formation + Delta-G solvation = 5.564202 kcal Electronic energy + Delta-G solvation = -28589.166406 eV Core-core repulsion = 24572.495343 eV Total energy + Delta-G solvation = -4016.671063 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.41477 -39.43031 -38.28489 -37.65487 -36.74899 -34.29004 -32.66608 -32.43607 -31.64993 -30.04657 -29.51087 -28.55610 -25.44879 -24.55630 -24.38097 -23.41685 -22.52216 -20.97135 -20.16527 -19.62656 -18.96630 -18.32452 -17.93095 -16.95579 -16.61476 -16.15941 -15.74363 -15.65056 -14.98591 -14.75358 -14.70122 -14.42723 -14.23963 -13.92071 -13.75195 -13.61862 -13.18226 -13.00459 -12.38002 -12.27346 -12.10131 -12.04077 -11.83294 -11.70979 -11.64126 -11.30980 -10.92794 -10.75485 -10.48454 -10.35993 -10.17373 -10.09339 -9.88369 -9.79029 -9.67939 -9.56899 -9.52981 -8.70002 -8.54987 -8.35004 -6.81694 -5.73653 -3.10185 -0.16940 0.30304 1.40922 2.20992 3.04393 3.16836 3.36396 3.43649 3.47294 3.48665 3.75243 4.15006 4.17921 4.35217 4.46133 4.53935 4.63000 4.75451 4.92824 5.04363 5.29358 5.35964 5.37590 5.44842 5.49985 5.51786 5.59697 5.66806 5.86226 5.91227 5.94993 6.04716 6.09219 6.17903 6.30658 6.32915 6.50659 6.57720 6.66058 6.73930 6.83948 7.06092 7.09370 7.40425 7.55491 7.63505 7.82142 7.85589 8.28373 8.43255 9.20332 9.80809 10.48217 11.38010 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.018700 B = 0.002365 C = 0.002182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.990401 B =11835.326763 C =12828.160221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.002 4.002 3 Si 0.911 3.089 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.233 4.233 8 H 0.075 0.925 9 N -0.589 5.589 10 C 0.172 3.828 11 C -0.148 4.148 12 C -0.127 4.127 13 C 0.152 3.848 14 H 0.039 0.961 15 C 0.106 3.894 16 N -0.699 5.699 17 C 0.562 3.438 18 O -0.535 6.535 19 C 0.087 3.913 20 C -0.096 4.096 21 C -0.022 4.022 22 C -0.103 4.103 23 C -0.098 4.098 24 C -0.116 4.116 25 C -0.083 4.083 26 C -0.109 4.109 27 C 0.352 3.648 28 O -0.473 6.473 29 N -0.483 5.483 30 H 0.254 0.746 31 H 0.074 0.926 32 H 0.025 0.975 33 H 0.058 0.942 34 H 0.058 0.942 35 H 0.063 0.937 36 H 0.059 0.941 37 H 0.064 0.936 38 H 0.073 0.927 39 H 0.407 0.593 40 H 0.157 0.843 41 H 0.138 0.862 42 H 0.130 0.870 43 H 0.130 0.870 44 H 0.138 0.862 45 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.386 -23.814 -7.877 28.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.199 4.199 3 Si 0.741 3.259 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.362 4.362 8 H 0.093 0.907 9 N -0.313 5.313 10 C 0.047 3.953 11 C -0.187 4.187 12 C -0.165 4.165 13 C 0.044 3.956 14 H 0.057 0.943 15 C -0.018 4.018 16 N -0.349 5.349 17 C 0.345 3.655 18 O -0.413 6.413 19 C -0.039 4.039 20 C -0.117 4.117 21 C -0.027 4.027 22 C -0.121 4.121 23 C -0.117 4.117 24 C -0.134 4.134 25 C -0.102 4.102 26 C -0.113 4.113 27 C 0.157 3.843 28 O -0.280 6.280 29 N -0.204 5.204 30 H 0.064 0.936 31 H 0.092 0.908 32 H 0.043 0.957 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.082 0.918 36 H 0.078 0.922 37 H 0.083 0.917 38 H 0.092 0.908 39 H 0.242 0.758 40 H 0.175 0.825 41 H 0.156 0.844 42 H 0.148 0.852 43 H 0.147 0.853 44 H 0.156 0.844 45 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges 12.321 -22.771 -7.969 27.089 hybrid contribution 1.241 0.402 -0.224 1.324 sum 13.562 -22.369 -8.193 27.412 Atomic orbital electron populations 1.69931 1.04997 1.25378 1.55939 1.24900 0.95688 0.97841 1.01481 0.86217 0.78576 0.83068 0.78027 1.20948 1.21575 1.21094 1.18951 0.90391 0.82204 1.44620 0.90678 1.44487 1.05876 1.00771 1.80164 1.21470 0.84641 0.90311 0.98889 1.23026 0.97456 0.99551 0.98663 1.22642 0.97007 0.97054 0.99836 1.21127 0.94518 0.88018 0.91979 0.94346 1.22340 0.96780 0.83163 0.99563 1.46014 1.52507 1.18746 1.17639 1.17796 0.79311 0.85325 0.83022 1.90810 1.61385 1.44346 1.44738 1.20755 0.99012 0.93416 0.90748 1.22239 0.95100 0.96629 0.97692 1.18079 0.97236 0.93065 0.94307 1.21071 0.96936 0.97822 0.96264 1.21055 0.98190 0.93270 0.99199 1.21019 0.99054 0.99760 0.93532 1.20954 0.95824 0.95245 0.98221 1.19047 1.00449 0.96219 0.95580 1.19108 0.91573 0.85974 0.87627 1.84734 1.53542 1.50689 1.39021 1.66859 1.19177 1.01216 1.33109 0.93573 0.90786 0.95683 0.92301 0.92320 0.91848 0.92226 0.91720 0.90836 0.75801 0.82501 0.84406 0.85164 0.85254 0.84435 0.73707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.92 10.54 55.49 0.58 -26.33 16 2 C 0.00 -0.06 5.47 -17.43 -0.10 -0.15 16 3 Si 0.91 22.35 29.55 -169.99 -5.02 17.33 16 4 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 6 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 7 C -0.23 -6.48 9.73 -15.06 -0.15 -6.63 16 8 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 9 N -0.59 -14.89 3.13 -162.57 -0.51 -15.40 16 10 C 0.17 4.16 5.42 -2.53 -0.01 4.15 16 11 C -0.15 -2.80 7.10 -24.52 -0.17 -2.98 16 12 C -0.13 -2.24 6.07 -24.83 -0.15 -2.39 16 13 C 0.15 3.12 3.22 -66.95 -0.22 2.91 16 14 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 15 C 0.11 2.15 5.09 -4.04 -0.02 2.13 16 16 N -0.70 -11.87 5.39 -61.22 -0.33 -12.20 16 17 C 0.56 9.75 7.80 -12.29 -0.10 9.65 16 18 O -0.54 -10.90 16.26 5.33 0.09 -10.81 16 19 C 0.09 1.24 6.73 -83.09 -0.56 0.68 16 20 C -0.10 -1.16 9.41 -38.65 -0.36 -1.53 16 21 C -0.02 -0.23 5.74 -106.84 -0.61 -0.84 16 22 C -0.10 -0.78 9.81 -39.52 -0.39 -1.17 16 23 C -0.10 -0.58 9.95 -39.90 -0.40 -0.98 16 24 C -0.12 -0.67 9.95 -39.88 -0.40 -1.07 16 25 C -0.08 -0.58 9.58 -39.58 -0.38 -0.96 16 26 C -0.11 -1.07 5.76 -106.66 -0.61 -1.68 16 27 C 0.35 3.82 7.80 -16.56 -0.13 3.69 16 28 O -0.47 -3.92 12.83 -18.17 -0.23 -4.15 16 29 N -0.48 -6.39 9.47 -9.60 -0.09 -6.48 16 30 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 31 H 0.07 1.99 6.86 -51.93 -0.36 1.63 16 32 H 0.03 0.66 8.08 -51.93 -0.42 0.24 16 33 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.06 1.11 7.78 -51.93 -0.40 0.70 16 36 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.06 1.41 8.03 -51.93 -0.42 1.00 16 38 H 0.07 1.67 7.86 -51.93 -0.41 1.26 16 39 H 0.41 6.17 7.54 -40.82 -0.31 5.86 16 40 H 0.16 1.80 7.59 -52.49 -0.40 1.41 16 41 H 0.14 0.79 8.06 -52.49 -0.42 0.36 16 42 H 0.13 0.44 8.06 -52.48 -0.42 0.02 16 43 H 0.13 0.42 8.06 -52.49 -0.42 0.00 16 44 H 0.14 0.69 7.65 -52.49 -0.40 0.29 16 45 H 0.40 1.33 9.06 45.56 0.41 1.74 16 LS Contribution 376.46 15.07 5.67 5.67 Total: -1.00 -34.35 376.46 -9.80 -44.15 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: -5.21 Total: 5.40 kcal Atomic # 6 Polarization: 7.58 SS G_CDS: -4.75 Total: 2.83 kcal Atomic # 7 Polarization: -60.07 SS G_CDS: -0.34 Total: -60.42 kcal Atomic # 8 Polarization: -14.82 SS G_CDS: -0.15 Total: -14.96 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -34.35 -9.80 -44.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027932461.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.717 kcal (2) G-P(sol) polarization free energy of solvation -34.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.153 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds