Wall clock time and date at job start Tue Mar 31 2020 23:55:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86792 * 120.00083 * 2 1 4 4 H 1.48501 * 109.47101 * 239.99684 * 3 2 1 5 5 H 1.48499 * 109.47458 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47252 * 120.00010 * 3 2 1 7 7 C 1.38813 * 119.99796 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00220 * 180.02562 * 7 2 1 9 9 N 1.36945 * 119.99936 * 359.97438 * 7 2 1 10 10 C 1.47420 * 125.64771 * 346.27197 * 9 7 2 11 11 C 1.54911 * 104.92483 * 204.09143 * 10 9 7 12 12 C 1.55271 * 101.52965 * 323.12655 * 11 10 9 13 13 C 1.47023 * 125.64364 * 166.29408 * 9 7 2 14 14 H 1.08997 * 109.88483 * 59.50817 * 13 9 7 15 15 C 1.52998 * 109.88399 * 298.33764 * 13 9 7 16 16 N 1.46504 * 109.46991 * 175.50576 * 15 13 9 17 17 C 1.34772 * 119.99676 * 184.66328 * 16 15 13 18 18 O 1.21546 * 120.00336 * 359.97438 * 17 16 15 19 19 C 1.47933 * 119.99916 * 179.97438 * 17 16 15 20 20 C 1.38256 * 119.24183 * 179.97438 * 19 17 16 21 21 C 1.40693 * 118.64694 * 179.97438 * 20 19 17 22 22 C 1.40242 * 122.05380 * 180.02562 * 21 20 19 23 23 C 1.36309 * 119.48098 * 180.02562 * 22 21 20 24 24 C 1.39253 * 120.94585 * 359.95464 * 23 22 21 25 25 C 1.36358 * 121.05828 * 0.05019 * 24 23 22 26 26 C 1.40041 * 119.58896 * 359.97230 * 25 24 23 27 27 C 1.41358 * 121.85595 * 180.02562 * 26 25 24 28 28 O 1.35493 * 119.94754 * 359.97438 * 27 26 25 29 29 N 1.31380 * 120.09754 * 179.72362 * 27 26 25 30 30 H 0.97000 * 119.99954 * 359.97438 * 1 2 3 31 31 H 1.08998 * 110.36856 * 322.98395 * 10 9 7 32 32 H 1.09001 * 110.36607 * 85.20222 * 10 9 7 33 33 H 1.09002 * 111.00372 * 81.12557 * 11 10 9 34 34 H 1.09005 * 111.00326 * 204.97200 * 11 10 9 35 35 H 1.08999 * 110.62880 * 277.00832 * 12 11 10 36 36 H 1.09000 * 110.75587 * 153.77639 * 12 11 10 37 37 H 1.09000 * 109.47113 * 295.50467 * 15 13 9 38 38 H 1.08998 * 109.47033 * 55.50592 * 15 13 9 39 39 H 0.96996 * 120.00160 * 4.66169 * 16 15 13 40 40 H 1.08001 * 120.67646 * 359.97438 * 20 19 17 41 41 H 1.08002 * 120.25375 * 359.97438 * 22 21 20 42 42 H 1.08006 * 119.52681 * 179.97438 * 23 22 21 43 43 H 1.07995 * 119.46941 * 180.02562 * 24 23 22 44 44 H 1.07996 * 120.20523 * 179.97438 * 25 24 23 45 45 H 0.96700 * 114.00265 * 90.00158 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0001 9 7 1.3254 -2.3881 -0.0005 10 6 -0.1119 -2.5503 0.2843 11 6 -0.2604 -4.0153 0.7655 12 6 0.7664 -4.7456 -0.1418 13 6 1.9022 -3.7105 -0.2841 14 1 2.6954 -3.9299 0.4304 15 6 2.4583 -3.7409 -1.7092 16 7 3.1251 -5.0237 -1.9458 17 6 3.7748 -5.2413 -3.1064 18 8 3.8072 -4.3735 -3.9568 19 6 4.4487 -6.5364 -3.3452 20 6 5.1102 -6.7431 -4.5415 21 6 5.7472 -7.9792 -4.7552 22 6 6.4386 -8.2650 -5.9414 23 6 7.0365 -9.4805 -6.0933 24 6 6.9710 -10.4413 -5.0874 25 6 6.3068 -10.1958 -3.9222 26 6 5.6800 -8.9581 -3.7310 27 6 4.9792 -8.6525 -2.5421 28 8 4.9002 -9.5703 -1.5485 29 7 4.4084 -7.4780 -2.3972 30 1 -0.4850 0.8401 0.0004 31 1 -0.4235 -1.8601 1.0682 32 1 -0.6985 -2.3866 -0.6197 33 1 0.0111 -4.1106 1.8169 34 1 -1.2711 -4.3837 0.5897 35 1 0.3274 -4.9724 -1.1133 36 1 1.1302 -5.6534 0.3396 37 1 1.6415 -3.6192 -2.4206 38 1 3.1751 -2.9297 -1.8368 39 1 3.0990 -5.7163 -1.2673 40 1 5.1374 -5.9714 -5.2966 41 1 6.4963 -7.5279 -6.7287 42 1 7.5688 -9.7015 -7.0066 43 1 7.4537 -11.3964 -5.2328 44 1 6.2643 -10.9511 -3.1514 45 1 5.6198 -9.5159 -0.9048 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027932461.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:55:30 Heat of formation + Delta-G solvation = -20.602568 kcal Electronic energy + Delta-G solvation = -28590.301082 eV Core-core repulsion = 24572.495343 eV Total energy + Delta-G solvation = -4017.805739 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.20423 -40.74642 -39.32382 -38.91134 -37.60664 -35.86946 -34.43031 -33.33198 -32.35878 -31.48000 -30.89086 -30.06540 -26.91167 -26.25944 -25.05999 -24.78328 -23.17720 -22.25505 -21.83807 -21.24146 -20.01561 -19.22828 -18.78817 -18.49917 -17.78268 -17.24318 -16.99428 -16.62416 -16.51606 -16.17361 -15.98450 -15.70291 -15.26062 -15.08968 -14.79079 -14.71604 -14.41621 -14.10703 -13.99114 -13.66312 -13.47499 -13.09156 -12.97590 -12.89682 -12.87218 -12.79624 -12.67520 -12.17276 -12.06930 -11.91475 -11.73212 -11.57562 -11.48836 -11.43334 -11.15662 -10.69623 -10.59359 -10.26123 -10.12487 -9.10307 -8.88533 -7.89113 -5.27182 -0.91796 -0.40695 0.75795 1.29467 1.43091 1.46957 1.52611 1.96611 2.21326 2.38720 2.49229 2.92960 3.27169 3.30306 3.51154 3.63108 3.73248 3.80484 3.90739 3.95856 3.99332 4.22531 4.24823 4.25963 4.38566 4.40743 4.51121 4.62190 4.65227 4.69247 4.89199 4.94675 4.97022 5.00475 5.11291 5.17625 5.28394 5.33562 5.37595 5.44634 5.44906 5.51824 5.65098 5.76705 5.83066 6.21427 6.31343 6.55485 6.72869 7.07175 7.09086 7.74079 8.40259 9.21291 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.018700 B = 0.002365 C = 0.002182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.990401 B =11835.326763 C =12828.160221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.059 4.059 3 Si 0.974 3.026 4 H -0.282 1.282 5 H -0.291 1.291 6 H -0.273 1.273 7 C -0.243 4.243 8 H 0.075 0.925 9 N -0.610 5.610 10 C 0.173 3.827 11 C -0.132 4.132 12 C -0.115 4.115 13 C 0.149 3.851 14 H 0.048 0.952 15 C 0.127 3.873 16 N -0.690 5.690 17 C 0.561 3.439 18 O -0.577 6.577 19 C 0.059 3.941 20 C -0.092 4.092 21 C -0.040 4.040 22 C -0.115 4.115 23 C -0.088 4.088 24 C -0.103 4.103 25 C -0.088 4.088 26 C -0.117 4.117 27 C 0.358 3.642 28 O -0.473 6.473 29 N -0.508 5.508 30 H 0.249 0.751 31 H 0.040 0.960 32 H -0.007 1.007 33 H 0.071 0.929 34 H 0.084 0.916 35 H 0.064 0.936 36 H 0.099 0.901 37 H 0.041 0.959 38 H 0.040 0.960 39 H 0.418 0.582 40 H 0.153 0.847 41 H 0.151 0.849 42 H 0.163 0.837 43 H 0.165 0.835 44 H 0.160 0.840 45 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.680 -27.911 -8.274 33.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.253 4.253 3 Si 0.802 3.198 4 H -0.209 1.209 5 H -0.217 1.217 6 H -0.199 1.199 7 C -0.372 4.372 8 H 0.093 0.907 9 N -0.334 5.334 10 C 0.048 3.952 11 C -0.171 4.171 12 C -0.152 4.152 13 C 0.042 3.958 14 H 0.066 0.934 15 C 0.001 3.999 16 N -0.340 5.340 17 C 0.347 3.653 18 O -0.457 6.457 19 C -0.065 4.065 20 C -0.114 4.114 21 C -0.045 4.045 22 C -0.132 4.132 23 C -0.107 4.107 24 C -0.121 4.121 25 C -0.108 4.108 26 C -0.121 4.121 27 C 0.162 3.838 28 O -0.284 6.284 29 N -0.230 5.230 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.011 0.989 33 H 0.089 0.911 34 H 0.103 0.897 35 H 0.083 0.917 36 H 0.118 0.882 37 H 0.060 0.940 38 H 0.059 0.941 39 H 0.256 0.744 40 H 0.171 0.829 41 H 0.169 0.831 42 H 0.180 0.820 43 H 0.182 0.818 44 H 0.178 0.822 45 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges 14.650 -26.924 -8.335 31.765 hybrid contribution 0.695 1.426 -0.196 1.599 sum 15.345 -25.498 -8.531 30.958 Atomic orbital electron populations 1.70135 1.06239 1.25528 1.57352 1.25689 0.96573 1.01001 1.02033 0.85232 0.77331 0.79091 0.78178 1.20869 1.21724 1.19921 1.19263 0.90712 0.83618 1.43597 0.90718 1.44742 1.06389 1.01782 1.80501 1.21293 0.83887 0.93463 0.96512 1.22897 0.99443 0.95362 0.99351 1.22617 0.95217 0.97273 1.00123 1.21296 0.95891 0.86881 0.91756 0.93424 1.21811 0.95263 0.83897 0.98934 1.45754 1.52372 1.17675 1.18223 1.18317 0.78556 0.86288 0.82141 1.90770 1.62868 1.46149 1.45896 1.20163 1.01398 0.92607 0.92374 1.22294 0.94679 0.97613 0.96775 1.18255 0.98008 0.92419 0.95779 1.21324 0.96977 0.99242 0.95701 1.21513 0.96666 0.92170 1.00322 1.21511 0.97290 1.00880 0.92416 1.21257 0.95488 0.94455 0.99552 1.19254 1.00622 0.97283 0.94943 1.19283 0.90658 0.85338 0.88525 1.84691 1.54892 1.49595 1.39201 1.66710 1.20988 1.02161 1.33122 0.94216 0.94139 0.98920 0.91060 0.89730 0.91698 0.88225 0.94041 0.94122 0.74439 0.82948 0.83095 0.81951 0.81792 0.82248 0.71161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.99 10.54 21.65 0.23 -57.76 16 2 C -0.06 -3.46 5.47 84.86 0.46 -3.00 16 3 Si 0.97 47.40 29.55 68.60 2.03 49.42 16 4 H -0.28 -13.58 7.11 99.48 0.71 -12.88 16 5 H -0.29 -14.12 7.11 99.48 0.71 -13.41 16 6 H -0.27 -12.71 7.11 99.48 0.71 -12.00 16 7 C -0.24 -13.99 9.73 84.03 0.82 -13.17 16 8 H 0.08 4.19 7.83 -2.91 -0.02 4.17 16 9 N -0.61 -31.87 3.13 -668.26 -2.09 -33.96 16 10 C 0.17 8.70 5.42 86.86 0.47 9.17 16 11 C -0.13 -4.82 7.10 32.03 0.23 -4.59 16 12 C -0.11 -3.84 6.07 31.82 0.19 -3.65 16 13 C 0.15 6.18 3.22 45.34 0.15 6.33 16 14 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 15 C 0.13 5.38 5.09 86.38 0.44 5.82 16 16 N -0.69 -24.15 5.39 -465.89 -2.51 -26.67 16 17 C 0.56 20.47 7.80 86.81 0.68 21.15 16 18 O -0.58 -25.05 16.26 -3.86 -0.06 -25.12 16 19 C 0.06 1.74 6.73 41.44 0.28 2.02 16 20 C -0.09 -2.31 9.41 22.87 0.22 -2.09 16 21 C -0.04 -0.77 5.74 -21.30 -0.12 -0.90 16 22 C -0.11 -1.47 9.81 22.31 0.22 -1.25 16 23 C -0.09 -0.67 9.95 22.06 0.22 -0.45 16 24 C -0.10 -0.69 9.95 22.08 0.22 -0.47 16 25 C -0.09 -0.91 9.58 22.27 0.21 -0.69 16 26 C -0.12 -2.05 5.76 -21.18 -0.12 -2.18 16 27 C 0.36 7.24 7.80 85.53 0.67 7.90 16 28 O -0.47 -6.70 12.83 -87.94 -1.13 -7.83 16 29 N -0.51 -13.32 9.47 -297.68 -2.82 -16.14 16 30 H 0.25 14.85 8.31 -92.71 -0.77 14.08 16 31 H 0.04 2.27 6.86 -2.39 -0.02 2.26 16 32 H -0.01 -0.40 8.08 -2.39 -0.02 -0.42 16 33 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 34 H 0.08 2.67 8.14 -2.38 -0.02 2.65 16 35 H 0.06 2.18 7.78 -2.39 -0.02 2.16 16 36 H 0.10 2.62 8.14 -2.39 -0.02 2.60 16 37 H 0.04 1.93 8.03 -2.39 -0.02 1.91 16 38 H 0.04 1.97 7.86 -2.39 -0.02 1.95 16 39 H 0.42 12.62 7.54 -92.71 -0.70 11.92 16 40 H 0.15 3.75 7.59 -2.91 -0.02 3.73 16 41 H 0.15 1.43 8.06 -2.91 -0.02 1.41 16 42 H 0.16 0.22 8.06 -2.91 -0.02 0.20 16 43 H 0.16 0.02 8.06 -2.91 -0.02 0.00 16 44 H 0.16 0.90 7.65 -2.91 -0.02 0.88 16 45 H 0.43 1.65 9.06 -74.06 -0.67 0.98 16 Total: -1.00 -80.13 376.46 -1.46 -81.59 By element: Atomic # 1 Polarization: 16.82 SS G_CDS: -0.33 Total: 16.49 kcal Atomic # 6 Polarization: 14.75 SS G_CDS: 5.22 Total: 19.97 kcal Atomic # 7 Polarization: -127.34 SS G_CDS: -7.19 Total: -134.53 kcal Atomic # 8 Polarization: -31.76 SS G_CDS: -1.19 Total: -32.95 kcal Atomic # 14 Polarization: 47.40 SS G_CDS: 2.03 Total: 49.42 kcal Total: -80.13 -1.46 -81.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027932461.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.991 kcal (2) G-P(sol) polarization free energy of solvation -80.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds