Wall clock time and date at job start Wed Apr 1 2020 00:20:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86796 * 119.99679 * 2 1 4 4 H 1.48509 * 109.46772 * 239.99620 * 3 2 1 5 5 H 1.48498 * 109.47338 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47101 * 119.99864 * 3 2 1 7 7 C 1.38813 * 120.00106 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00186 * 180.02562 * 7 2 1 9 9 N 1.36942 * 120.00051 * 359.97438 * 7 2 1 10 10 C 1.47422 * 125.64769 * 345.90848 * 9 7 2 11 11 C 1.54908 * 104.83115 * 204.09130 * 10 9 7 12 12 C 1.55153 * 101.58440 * 322.99186 * 11 10 9 13 13 C 1.47016 * 125.64833 * 165.87039 * 9 7 2 14 14 H 1.09003 * 109.88667 * 59.39947 * 13 9 7 15 15 C 1.53006 * 109.88264 * 298.39415 * 13 9 7 16 16 N 1.46495 * 109.47364 * 174.60688 * 15 13 9 17 17 C 1.34774 * 120.00564 * 174.70369 * 16 15 13 18 18 O 1.21713 * 119.99554 * 359.97438 * 17 16 15 19 19 C 1.46565 * 120.00721 * 179.97438 * 17 16 15 20 20 C 1.36567 * 126.56919 * 179.97438 * 19 17 16 21 21 N 1.33319 * 107.65400 * 179.73533 * 20 19 17 22 22 C 1.31627 * 108.95772 * 0.24722 * 21 20 19 23 23 C 1.47712 * 125.54027 * 180.02562 * 22 21 20 24 24 C 1.39641 * 120.14763 * 179.69621 * 23 22 21 25 25 C 1.37940 * 119.83976 * 179.76790 * 24 23 22 26 26 C 1.38370 * 120.15334 * 0.51199 * 25 24 23 27 27 C 1.38370 * 120.30579 * 359.74408 * 26 25 24 28 28 C 1.37944 * 120.14976 * 359.97438 * 27 26 25 29 29 O 1.34204 * 108.92020 * 359.97438 * 22 21 20 30 30 H 0.96999 * 120.00725 * 0.02562 * 1 2 3 31 31 H 1.08997 * 110.37254 * 322.93375 * 10 9 7 32 32 H 1.09004 * 110.36236 * 85.14345 * 10 9 7 33 33 H 1.08997 * 111.00132 * 81.07371 * 11 10 9 34 34 H 1.09000 * 111.00332 * 204.91956 * 11 10 9 35 35 H 1.08994 * 110.72289 * 277.14203 * 12 11 10 36 36 H 1.08996 * 110.71897 * 153.86399 * 12 11 10 37 37 H 1.09003 * 109.46918 * 54.60493 * 15 13 9 38 38 H 1.08995 * 109.46877 * 294.60467 * 15 13 9 39 39 H 0.97003 * 119.99787 * 354.69864 * 16 15 13 40 40 H 1.07996 * 126.16878 * 0.02562 * 20 19 17 41 41 H 1.07992 * 120.07520 * 0.02613 * 24 23 22 42 42 H 1.08003 * 119.92158 * 180.23046 * 25 24 23 43 43 H 1.08000 * 119.84692 * 179.76326 * 26 25 24 44 44 H 1.07993 * 119.92145 * 179.97438 * 27 26 25 45 45 H 1.07993 * 120.07532 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6964 -1.2126 5 1 1.2851 2.7464 -0.0006 6 1 3.1038 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0016 10 6 -0.1101 -2.5511 0.2939 11 6 -0.2535 -4.0174 0.7723 12 6 0.7654 -4.7451 -0.1440 13 6 1.9004 -3.7096 -0.2894 14 1 2.6996 -3.9303 0.4183 15 6 2.4487 -3.7355 -1.7176 16 7 3.1325 -5.0091 -1.9551 17 6 3.6046 -5.3019 -3.1831 18 8 3.4623 -4.5082 -4.0948 19 6 4.2893 -6.5758 -3.4206 20 6 4.8167 -7.0078 -4.6040 21 7 5.3530 -8.2099 -4.3927 22 6 5.1751 -8.5418 -3.1315 23 6 5.6266 -9.8000 -2.5029 24 6 5.3824 -10.0340 -1.1480 25 6 5.8026 -11.2132 -0.5686 26 6 6.4739 -12.1583 -1.3241 27 6 6.7239 -11.9305 -2.6658 28 6 6.3042 -10.7582 -3.2595 29 8 4.5180 -7.5509 -2.5092 30 1 -0.4851 0.8400 -0.0004 31 1 -0.4174 -1.8633 1.0817 32 1 -0.7018 -2.3843 -0.6062 33 1 0.0253 -4.1151 1.8215 34 1 -1.2648 -4.3867 0.6025 35 1 0.3209 -4.9687 -1.1138 36 1 1.1317 -5.6544 0.3324 37 1 3.1530 -2.9144 -1.8514 38 1 1.6261 -3.6275 -2.4245 39 1 3.2457 -5.6417 -1.2285 40 1 4.8058 -6.4703 -5.5406 41 1 4.8622 -9.2954 -0.5564 42 1 5.6111 -11.3973 0.4783 43 1 6.8040 -13.0782 -0.8645 44 1 7.2487 -12.6722 -3.2495 45 1 6.5003 -10.5814 -4.3066 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027950156.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:20:35 Heat of formation + Delta-G solvation = 39.957897 kcal Electronic energy + Delta-G solvation = -28261.631507 eV Core-core repulsion = 24246.451866 eV Total energy + Delta-G solvation = -4015.179640 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.59204 -39.60362 -39.32700 -37.67133 -35.33327 -34.33785 -32.78042 -32.52290 -31.44676 -30.16856 -29.47168 -28.52065 -25.37469 -24.62516 -23.99627 -23.40034 -22.31691 -21.61707 -20.75492 -20.22439 -19.72055 -18.55753 -17.70888 -17.11974 -16.70641 -16.39905 -16.06713 -15.59131 -15.08324 -14.95120 -14.83035 -14.45537 -14.07229 -13.96187 -13.89870 -13.71646 -13.44561 -13.38005 -13.09484 -12.14297 -11.96758 -11.93464 -11.80905 -11.78099 -11.62435 -11.40343 -11.08690 -10.99199 -10.80567 -10.36666 -10.28245 -10.14182 -10.13790 -9.94904 -9.86032 -9.73451 -9.46554 -8.93473 -8.63606 -8.56137 -6.89521 -5.80440 -3.17658 0.04654 0.90393 1.10382 2.05265 2.30113 3.09911 3.16523 3.35845 3.38708 3.43504 3.44152 3.57700 4.37982 4.45128 4.46536 4.61341 4.69232 4.71700 4.90800 5.01019 5.11711 5.27164 5.31279 5.34288 5.40149 5.46186 5.54511 5.57107 5.75786 5.80427 5.92304 5.97620 5.98511 6.02559 6.05594 6.19132 6.38813 6.39195 6.42647 6.49312 6.62329 6.71027 6.96626 7.21826 7.47586 7.54076 7.57869 7.75385 8.11794 8.21785 9.13077 9.73536 10.40335 11.31169 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.016975 B = 0.002223 C = 0.002095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.071432 B =12593.543294 C =13360.036655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.000 4.000 3 Si 0.912 3.088 4 H -0.283 1.283 5 H -0.289 1.289 6 H -0.284 1.284 7 C -0.237 4.237 8 H 0.076 0.924 9 N -0.588 5.588 10 C 0.171 3.829 11 C -0.148 4.148 12 C -0.127 4.127 13 C 0.152 3.848 14 H 0.039 0.961 15 C 0.106 3.894 16 N -0.706 5.706 17 C 0.599 3.401 18 O -0.514 6.514 19 C -0.096 4.096 20 C 0.051 3.949 21 N -0.476 5.476 22 C 0.252 3.748 23 C -0.025 4.025 24 C -0.084 4.084 25 C -0.121 4.121 26 C -0.098 4.098 27 C -0.124 4.124 28 C -0.067 4.067 29 O -0.182 6.182 30 H 0.255 0.745 31 H 0.074 0.926 32 H 0.027 0.973 33 H 0.059 0.941 34 H 0.058 0.942 35 H 0.063 0.937 36 H 0.057 0.943 37 H 0.074 0.926 38 H 0.071 0.929 39 H 0.401 0.599 40 H 0.201 0.799 41 H 0.134 0.866 42 H 0.132 0.868 43 H 0.129 0.871 44 H 0.133 0.867 45 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.245 -25.049 -1.943 27.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.198 4.198 3 Si 0.741 3.259 4 H -0.209 1.209 5 H -0.215 1.215 6 H -0.210 1.210 7 C -0.365 4.365 8 H 0.093 0.907 9 N -0.312 5.312 10 C 0.047 3.953 11 C -0.187 4.187 12 C -0.165 4.165 13 C 0.043 3.957 14 H 0.056 0.944 15 C -0.019 4.019 16 N -0.356 5.356 17 C 0.383 3.617 18 O -0.392 6.392 19 C -0.152 4.152 20 C -0.093 4.093 21 N -0.204 5.204 22 C 0.051 3.949 23 C -0.026 4.026 24 C -0.104 4.104 25 C -0.139 4.139 26 C -0.117 4.117 27 C -0.141 4.141 28 C -0.086 4.086 29 O -0.068 6.068 30 H 0.065 0.935 31 H 0.092 0.908 32 H 0.045 0.955 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.082 0.918 36 H 0.076 0.924 37 H 0.092 0.908 38 H 0.090 0.910 39 H 0.235 0.765 40 H 0.218 0.782 41 H 0.152 0.848 42 H 0.150 0.850 43 H 0.147 0.853 44 H 0.150 0.850 45 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 10.314 -24.530 -2.924 26.770 hybrid contribution 0.149 1.113 0.650 1.297 sum 10.463 -23.417 -2.274 25.749 Atomic orbital electron populations 1.69922 1.05030 1.25527 1.55567 1.24918 0.95694 0.97916 1.01235 0.86216 0.78601 0.82988 0.78060 1.20899 1.21521 1.21040 1.18937 0.90385 0.82149 1.45068 0.90653 1.44489 1.06127 1.00795 1.79763 1.21479 0.84643 0.90258 0.98951 1.23006 0.97524 0.99558 0.98609 1.22617 0.97074 0.96949 0.99842 1.21137 0.94576 0.88252 0.91722 0.94383 1.22446 0.96676 0.82723 1.00045 1.46100 1.57252 1.22098 1.10125 1.16364 0.78831 0.82489 0.84055 1.90929 1.57943 1.47074 1.43251 1.23564 1.09720 0.92288 0.89594 1.23597 0.95481 0.91249 0.99007 1.70580 1.21647 1.13978 1.14233 1.24013 0.93991 0.90061 0.86880 1.17334 1.02752 0.88942 0.93611 1.21340 0.98106 0.97830 0.93114 1.21123 0.98770 0.93489 1.00553 1.21432 0.96859 0.99182 0.94180 1.21142 1.00593 0.97160 0.95253 1.21235 0.94793 0.92060 1.00522 1.84533 1.58038 1.24581 1.39651 0.93475 0.90798 0.95542 0.92257 0.92282 0.91797 0.92379 0.90806 0.91049 0.76538 0.78224 0.84802 0.84969 0.85343 0.84957 0.84237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.31 10.55 55.49 0.59 -25.73 16 2 C 0.00 0.00 5.47 -17.43 -0.10 -0.10 16 3 Si 0.91 21.89 29.55 -169.99 -5.02 16.86 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.24 -6.40 9.71 -15.06 -0.15 -6.54 16 8 H 0.08 1.98 7.83 -52.49 -0.41 1.57 16 9 N -0.59 -14.32 3.13 -162.57 -0.51 -14.83 16 10 C 0.17 4.02 5.42 -2.53 -0.01 4.00 16 11 C -0.15 -2.67 7.08 -24.59 -0.17 -2.84 16 12 C -0.13 -2.08 6.25 -24.90 -0.16 -2.23 16 13 C 0.15 2.93 3.18 -66.95 -0.21 2.72 16 14 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 15 C 0.11 1.99 5.11 -4.04 -0.02 1.97 16 16 N -0.71 -10.80 5.37 -61.65 -0.33 -11.13 16 17 C 0.60 9.67 7.78 -12.90 -0.10 9.56 16 18 O -0.51 -9.98 16.88 5.18 0.09 -9.89 16 19 C -0.10 -1.33 7.18 -36.83 -0.26 -1.60 16 20 C 0.05 0.67 11.64 -17.51 -0.20 0.46 16 21 N -0.48 -6.08 10.86 -11.44 -0.12 -6.20 16 22 C 0.25 3.01 7.88 -13.77 -0.11 2.90 16 23 C -0.03 -0.24 5.87 -104.98 -0.62 -0.86 16 24 C -0.08 -0.67 9.72 -39.17 -0.38 -1.05 16 25 C -0.12 -0.74 10.03 -39.64 -0.40 -1.14 16 26 C -0.10 -0.53 10.04 -39.48 -0.40 -0.93 16 27 C -0.12 -0.73 10.03 -39.64 -0.40 -1.13 16 28 C -0.07 -0.54 9.69 -39.17 -0.38 -0.92 16 29 O -0.18 -2.28 10.30 2.79 0.03 -2.25 16 30 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 31 H 0.07 1.93 6.89 -51.93 -0.36 1.57 16 32 H 0.03 0.68 8.07 -51.93 -0.42 0.26 16 33 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 35 H 0.06 1.04 7.76 -51.93 -0.40 0.64 16 36 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.07 1.57 7.84 -51.93 -0.41 1.16 16 38 H 0.07 1.48 8.00 -51.93 -0.42 1.06 16 39 H 0.40 5.11 8.21 -40.82 -0.34 4.78 16 40 H 0.20 2.21 8.06 -52.49 -0.42 1.79 16 41 H 0.13 0.96 7.89 -52.49 -0.41 0.54 16 42 H 0.13 0.53 8.06 -52.48 -0.42 0.10 16 43 H 0.13 0.39 8.06 -52.49 -0.42 -0.04 16 44 H 0.13 0.48 8.06 -52.49 -0.42 0.06 16 45 H 0.14 1.08 7.82 -52.49 -0.41 0.67 16 LS Contribution 383.47 15.07 5.78 5.78 Total: -1.00 -31.94 383.47 -9.66 -41.60 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: -6.09 Total: 3.50 kcal Atomic # 6 Polarization: 6.35 SS G_CDS: -4.06 Total: 2.29 kcal Atomic # 7 Polarization: -57.51 SS G_CDS: -0.38 Total: -57.89 kcal Atomic # 8 Polarization: -12.26 SS G_CDS: 0.12 Total: -12.14 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -31.94 -9.66 -41.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027950156.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.556 kcal (2) G-P(sol) polarization free energy of solvation -31.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.598 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds