Wall clock time and date at job start Wed Apr 1 2020 00:20:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86796 * 119.99679 * 2 1 4 4 H 1.48509 * 109.46772 * 239.99620 * 3 2 1 5 5 H 1.48498 * 109.47338 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47101 * 119.99864 * 3 2 1 7 7 C 1.38813 * 120.00106 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00186 * 180.02562 * 7 2 1 9 9 N 1.36942 * 120.00051 * 359.97438 * 7 2 1 10 10 C 1.47422 * 125.64769 * 345.90848 * 9 7 2 11 11 C 1.54908 * 104.83115 * 204.09130 * 10 9 7 12 12 C 1.55153 * 101.58440 * 322.99186 * 11 10 9 13 13 C 1.47016 * 125.64833 * 165.87039 * 9 7 2 14 14 H 1.09003 * 109.88667 * 59.39947 * 13 9 7 15 15 C 1.53006 * 109.88264 * 298.39415 * 13 9 7 16 16 N 1.46495 * 109.47364 * 174.60688 * 15 13 9 17 17 C 1.34774 * 120.00564 * 174.70369 * 16 15 13 18 18 O 1.21713 * 119.99554 * 359.97438 * 17 16 15 19 19 C 1.46565 * 120.00721 * 179.97438 * 17 16 15 20 20 C 1.36567 * 126.56919 * 179.97438 * 19 17 16 21 21 N 1.33319 * 107.65400 * 179.73533 * 20 19 17 22 22 C 1.31627 * 108.95772 * 0.24722 * 21 20 19 23 23 C 1.47712 * 125.54027 * 180.02562 * 22 21 20 24 24 C 1.39641 * 120.14763 * 179.69621 * 23 22 21 25 25 C 1.37940 * 119.83976 * 179.76790 * 24 23 22 26 26 C 1.38370 * 120.15334 * 0.51199 * 25 24 23 27 27 C 1.38370 * 120.30579 * 359.74408 * 26 25 24 28 28 C 1.37944 * 120.14976 * 359.97438 * 27 26 25 29 29 O 1.34204 * 108.92020 * 359.97438 * 22 21 20 30 30 H 0.96999 * 120.00725 * 0.02562 * 1 2 3 31 31 H 1.08997 * 110.37254 * 322.93375 * 10 9 7 32 32 H 1.09004 * 110.36236 * 85.14345 * 10 9 7 33 33 H 1.08997 * 111.00132 * 81.07371 * 11 10 9 34 34 H 1.09000 * 111.00332 * 204.91956 * 11 10 9 35 35 H 1.08994 * 110.72289 * 277.14203 * 12 11 10 36 36 H 1.08996 * 110.71897 * 153.86399 * 12 11 10 37 37 H 1.09003 * 109.46918 * 54.60493 * 15 13 9 38 38 H 1.08995 * 109.46877 * 294.60467 * 15 13 9 39 39 H 0.97003 * 119.99787 * 354.69864 * 16 15 13 40 40 H 1.07996 * 126.16878 * 0.02562 * 20 19 17 41 41 H 1.07992 * 120.07520 * 0.02613 * 24 23 22 42 42 H 1.08003 * 119.92158 * 180.23046 * 25 24 23 43 43 H 1.08000 * 119.84692 * 179.76326 * 26 25 24 44 44 H 1.07993 * 119.92145 * 179.97438 * 27 26 25 45 45 H 1.07993 * 120.07532 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6964 -1.2126 5 1 1.2851 2.7464 -0.0006 6 1 3.1038 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0016 10 6 -0.1101 -2.5511 0.2939 11 6 -0.2535 -4.0174 0.7723 12 6 0.7654 -4.7451 -0.1440 13 6 1.9004 -3.7096 -0.2894 14 1 2.6996 -3.9303 0.4183 15 6 2.4487 -3.7355 -1.7176 16 7 3.1325 -5.0091 -1.9551 17 6 3.6046 -5.3019 -3.1831 18 8 3.4623 -4.5082 -4.0948 19 6 4.2893 -6.5758 -3.4206 20 6 4.8167 -7.0078 -4.6040 21 7 5.3530 -8.2099 -4.3927 22 6 5.1751 -8.5418 -3.1315 23 6 5.6266 -9.8000 -2.5029 24 6 5.3824 -10.0340 -1.1480 25 6 5.8026 -11.2132 -0.5686 26 6 6.4739 -12.1583 -1.3241 27 6 6.7239 -11.9305 -2.6658 28 6 6.3042 -10.7582 -3.2595 29 8 4.5180 -7.5509 -2.5092 30 1 -0.4851 0.8400 -0.0004 31 1 -0.4174 -1.8633 1.0817 32 1 -0.7018 -2.3843 -0.6062 33 1 0.0253 -4.1151 1.8215 34 1 -1.2648 -4.3867 0.6025 35 1 0.3209 -4.9687 -1.1138 36 1 1.1317 -5.6544 0.3324 37 1 3.1530 -2.9144 -1.8514 38 1 1.6261 -3.6275 -2.4245 39 1 3.2457 -5.6417 -1.2285 40 1 4.8058 -6.4703 -5.5406 41 1 4.8622 -9.2954 -0.5564 42 1 5.6111 -11.3973 0.4783 43 1 6.8040 -13.0782 -0.8645 44 1 7.2487 -12.6722 -3.2495 45 1 6.5003 -10.5814 -4.3066 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027950156.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:20:34 Heat of formation + Delta-G solvation = 18.437240 kcal Electronic energy + Delta-G solvation = -28262.564712 eV Core-core repulsion = 24246.451866 eV Total energy + Delta-G solvation = -4016.112846 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -44.56738 -40.87111 -39.96189 -39.29541 -36.39719 -35.74915 -34.43951 -33.48937 -31.94588 -31.58620 -30.98916 -29.87742 -26.87041 -26.18936 -25.06949 -24.35497 -23.10805 -22.41021 -22.08662 -21.75103 -21.27520 -19.73910 -18.76813 -18.32770 -18.12203 -17.50398 -17.06069 -16.74932 -16.37139 -16.27185 -16.09033 -15.71599 -15.52092 -15.03298 -14.73223 -14.67897 -14.60465 -14.36882 -13.99498 -13.89693 -13.67482 -13.43992 -13.04028 -12.88684 -12.73818 -12.66939 -12.43603 -12.26766 -12.07381 -11.98139 -11.90051 -11.78848 -11.53156 -11.48680 -11.42976 -10.93138 -10.68865 -10.30084 -9.96227 -9.41327 -8.88661 -7.89410 -5.27447 -0.78890 0.26934 0.41474 1.05081 1.40787 1.44144 1.47372 1.52918 1.88207 1.94021 2.48095 2.68121 2.81927 3.29667 3.51796 3.68429 3.73684 3.90496 3.94221 3.97520 4.00771 4.13295 4.23138 4.25109 4.33380 4.40542 4.46634 4.50925 4.56276 4.68804 4.83182 4.88600 4.96228 4.96855 5.08398 5.08599 5.12423 5.23456 5.36727 5.45122 5.46059 5.50665 5.52763 5.65246 5.77332 5.92663 6.15030 6.21729 6.39275 6.86593 7.07517 7.74233 8.39924 9.21013 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.016975 B = 0.002223 C = 0.002095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.071432 B =12593.543294 C =13360.036655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.059 4.059 3 Si 0.972 3.028 4 H -0.282 1.282 5 H -0.294 1.294 6 H -0.274 1.274 7 C -0.242 4.242 8 H 0.078 0.922 9 N -0.609 5.609 10 C 0.173 3.827 11 C -0.133 4.133 12 C -0.114 4.114 13 C 0.148 3.852 14 H 0.053 0.947 15 C 0.126 3.874 16 N -0.693 5.693 17 C 0.605 3.395 18 O -0.554 6.554 19 C -0.119 4.119 20 C 0.061 3.939 21 N -0.495 5.495 22 C 0.268 3.732 23 C -0.058 4.058 24 C -0.091 4.091 25 C -0.124 4.124 26 C -0.088 4.088 27 C -0.124 4.124 28 C -0.075 4.075 29 O -0.180 6.180 30 H 0.248 0.752 31 H 0.038 0.962 32 H -0.007 1.007 33 H 0.071 0.929 34 H 0.082 0.918 35 H 0.064 0.936 36 H 0.102 0.898 37 H 0.044 0.956 38 H 0.048 0.952 39 H 0.416 0.584 40 H 0.213 0.787 41 H 0.137 0.863 42 H 0.157 0.843 43 H 0.160 0.840 44 H 0.158 0.842 45 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.902 -28.852 -0.715 31.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.253 4.253 3 Si 0.800 3.200 4 H -0.208 1.208 5 H -0.220 1.220 6 H -0.199 1.199 7 C -0.371 4.371 8 H 0.096 0.904 9 N -0.334 5.334 10 C 0.048 3.952 11 C -0.171 4.171 12 C -0.152 4.152 13 C 0.041 3.959 14 H 0.071 0.929 15 C 0.000 4.000 16 N -0.343 5.343 17 C 0.391 3.609 18 O -0.435 6.435 19 C -0.174 4.174 20 C -0.083 4.083 21 N -0.223 5.223 22 C 0.067 3.933 23 C -0.059 4.059 24 C -0.110 4.110 25 C -0.141 4.141 26 C -0.106 4.106 27 C -0.142 4.142 28 C -0.094 4.094 29 O -0.067 6.067 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.011 0.989 33 H 0.090 0.910 34 H 0.101 0.899 35 H 0.083 0.917 36 H 0.120 0.880 37 H 0.062 0.938 38 H 0.066 0.934 39 H 0.253 0.747 40 H 0.230 0.770 41 H 0.155 0.845 42 H 0.174 0.826 43 H 0.177 0.823 44 H 0.175 0.825 45 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 12.001 -28.391 -1.677 30.869 hybrid contribution -0.244 2.044 0.296 2.079 sum 11.757 -26.348 -1.381 28.885 Atomic orbital electron populations 1.70126 1.06262 1.25523 1.57304 1.25684 0.96524 1.01013 1.02061 0.85257 0.77327 0.79197 0.78194 1.20801 1.21973 1.19948 1.19265 0.90780 0.83525 1.43542 0.90449 1.44739 1.06569 1.01909 1.80153 1.21292 0.83992 0.93475 0.96469 1.22871 0.99547 0.95325 0.99380 1.22609 0.95218 0.97331 1.00044 1.21335 0.96056 0.86865 0.91673 0.92937 1.21911 0.95307 0.83456 0.99309 1.45775 1.56800 1.21099 1.10666 1.16481 0.78141 0.82850 0.83456 1.90904 1.59513 1.48672 1.44383 1.22938 1.11901 0.92278 0.90286 1.23888 0.94039 0.91181 0.99211 1.70644 1.22791 1.14012 1.14900 1.24681 0.91835 0.90108 0.86692 1.17548 1.05097 0.88576 0.94704 1.21511 0.98198 0.98818 0.92471 1.21467 0.98117 0.92717 1.01823 1.21871 0.95056 0.99860 0.93820 1.21475 1.00068 0.96700 0.95918 1.21359 0.94871 0.92665 1.00482 1.84510 1.58433 1.24496 1.39290 0.94257 0.94353 0.98906 0.91034 0.89901 0.91677 0.87960 0.93786 0.93368 0.74666 0.77046 0.84483 0.82583 0.82276 0.82469 0.84660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.69 10.55 21.65 0.23 -56.46 16 2 C -0.06 -3.35 5.47 84.86 0.46 -2.89 16 3 Si 0.97 46.19 29.55 68.60 2.03 48.22 16 4 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 5 H -0.29 -14.02 7.11 99.48 0.71 -13.32 16 6 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 7 C -0.24 -13.37 9.71 84.03 0.82 -12.56 16 8 H 0.08 4.13 7.83 -2.91 -0.02 4.11 16 9 N -0.61 -30.24 3.13 -668.26 -2.09 -32.33 16 10 C 0.17 8.31 5.42 86.86 0.47 8.78 16 11 C -0.13 -4.53 7.08 31.98 0.23 -4.30 16 12 C -0.11 -3.45 6.25 31.78 0.20 -3.25 16 13 C 0.15 5.60 3.18 45.34 0.14 5.74 16 14 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 15 C 0.13 4.82 5.11 86.38 0.44 5.26 16 16 N -0.69 -20.84 5.37 -467.19 -2.51 -23.35 16 17 C 0.61 19.67 7.78 86.42 0.67 20.34 16 18 O -0.55 -22.18 16.88 -4.39 -0.07 -22.25 16 19 C -0.12 -3.26 7.18 24.05 0.17 -3.09 16 20 C 0.06 1.58 11.64 84.08 0.98 2.56 16 21 N -0.50 -12.39 10.86 -304.10 -3.30 -15.69 16 22 C 0.27 6.17 7.88 87.23 0.69 6.85 16 23 C -0.06 -1.02 5.87 -20.10 -0.12 -1.14 16 24 C -0.09 -1.23 9.72 22.54 0.22 -1.01 16 25 C -0.12 -1.07 10.03 22.23 0.22 -0.84 16 26 C -0.09 -0.59 10.04 22.33 0.22 -0.37 16 27 C -0.12 -1.07 10.03 22.23 0.22 -0.85 16 28 C -0.07 -1.06 9.69 22.54 0.22 -0.85 16 29 O -0.18 -4.35 10.30 -12.93 -0.13 -4.48 16 30 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 31 H 0.04 2.09 6.89 -2.39 -0.02 2.07 16 32 H -0.01 -0.38 8.07 -2.39 -0.02 -0.40 16 33 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 34 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 35 H 0.06 1.98 7.76 -2.39 -0.02 1.96 16 36 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 37 H 0.04 1.94 7.84 -2.39 -0.02 1.92 16 38 H 0.05 2.07 8.00 -2.39 -0.02 2.05 16 39 H 0.42 9.87 8.21 -92.71 -0.76 9.10 16 40 H 0.21 4.69 8.06 -2.91 -0.02 4.66 16 41 H 0.14 1.68 7.89 -2.91 -0.02 1.65 16 42 H 0.16 0.58 8.06 -2.91 -0.02 0.55 16 43 H 0.16 0.12 8.06 -2.91 -0.02 0.09 16 44 H 0.16 0.54 8.06 -2.91 -0.02 0.51 16 45 H 0.14 1.96 7.82 -2.91 -0.02 1.94 16 Total: -1.00 -73.32 383.47 0.67 -72.65 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: 0.26 Total: 15.29 kcal Atomic # 6 Polarization: 12.14 SS G_CDS: 6.26 Total: 18.41 kcal Atomic # 7 Polarization: -120.17 SS G_CDS: -7.67 Total: -127.84 kcal Atomic # 8 Polarization: -26.52 SS G_CDS: -0.21 Total: -26.73 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 2.03 Total: 48.22 kcal Total: -73.32 0.67 -72.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027950156.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.087 kcal (2) G-P(sol) polarization free energy of solvation -73.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.650 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds