Wall clock time and date at job start Wed Apr 1 2020 00:03:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86792 * 119.99715 * 2 1 4 4 H 1.48495 * 109.47251 * 270.00033 * 3 2 1 5 5 H 1.48498 * 109.47304 * 30.00658 * 3 2 1 6 6 H 1.48503 * 109.47045 * 150.00443 * 3 2 1 7 7 C 1.38808 * 119.99863 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99816 * 179.97438 * 7 2 1 9 9 N 1.36942 * 120.00370 * 0.02562 * 7 2 1 10 10 C 1.47020 * 125.64572 * 0.02562 * 9 7 2 11 11 C 1.54328 * 107.27072 * 178.92396 * 10 9 7 12 12 C 1.55158 * 102.93984 * 337.80906 * 11 10 9 13 13 H 1.08998 * 111.00475 * 277.38706 * 12 11 10 14 14 C 1.53003 * 111.00093 * 153.57748 * 12 11 10 15 15 N 1.46500 * 109.47158 * 175.00007 * 14 12 11 16 16 C 1.34770 * 120.00261 * 180.02562 * 15 14 12 17 17 O 1.21645 * 119.99990 * 359.97438 * 16 15 14 18 18 C 1.47135 * 120.00157 * 180.02562 * 16 15 14 19 19 C 1.37936 * 120.55513 * 359.97438 * 18 16 15 20 20 N 1.33953 * 122.21004 * 180.02562 * 19 18 16 21 21 H 0.97003 * 118.60240 * 180.02562 * 20 19 18 22 22 C 1.37805 * 122.80421 * 0.02562 * 20 19 18 23 23 C 1.39275 * 120.53226 * 180.28211 * 22 20 19 24 24 C 1.37731 * 119.97617 * 180.23553 * 23 22 20 25 25 C 1.38794 * 120.72446 * 359.47985 * 24 23 22 26 26 C 1.37718 * 120.28991 * 0.26580 * 25 24 23 27 27 C 1.39497 * 119.60495 * 359.97438 * 26 25 24 28 28 C 1.47151 * 120.55323 * 180.02562 * 18 16 15 29 29 O 1.21851 * 121.41079 * 359.97438 * 28 18 16 30 30 C 1.47420 * 125.65073 * 180.02562 * 9 7 2 31 31 H 0.96996 * 120.00046 * 359.97438 * 1 2 3 32 32 H 1.09002 * 109.88209 * 59.50997 * 10 9 7 33 33 H 1.09000 * 109.88536 * 298.34371 * 10 9 7 34 34 H 1.08998 * 110.71847 * 219.44749 * 11 10 9 35 35 H 1.08994 * 110.87120 * 96.24669 * 11 10 9 36 36 H 1.09000 * 109.47469 * 54.99791 * 14 12 11 37 37 H 1.09006 * 109.46746 * 294.99865 * 14 12 11 38 38 H 0.96999 * 119.99830 * 0.02562 * 15 14 12 39 39 H 1.08003 * 118.89495 * 0.02562 * 19 18 16 40 40 H 1.08010 * 120.01291 * 359.97438 * 23 22 20 41 41 H 1.07999 * 119.63977 * 179.72508 * 24 23 22 42 42 H 1.08002 * 119.85404 * 180.28255 * 25 24 23 43 43 H 1.07998 * 120.19840 * 179.97438 * 26 25 24 44 44 H 1.09000 * 110.37319 * 85.30343 * 30 9 7 45 45 H 1.08997 * 110.36377 * 322.97908 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0464 -1.4000 5 1 1.4476 2.6526 0.7002 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0016 10 6 -0.1375 -2.5328 -0.0028 11 6 -0.4484 -4.0442 -0.0314 12 6 0.8525 -4.6555 -0.6157 13 1 0.8579 -4.5952 -1.7040 14 6 1.0371 -6.1007 -0.1486 15 7 2.2066 -6.6827 -0.8118 16 6 2.5643 -7.9559 -0.5526 17 8 1.9163 -8.6218 0.2325 18 6 3.7392 -8.5401 -1.2183 19 6 4.4824 -7.7953 -2.1101 20 7 5.5573 -8.2938 -2.7350 21 1 6.0420 -7.7232 -3.3518 22 6 6.0039 -9.5826 -2.5389 23 6 7.1313 -10.0505 -3.2096 24 6 7.5648 -11.3423 -3.0088 25 6 6.8960 -12.1867 -2.1337 26 6 5.7821 -11.7437 -1.4558 27 6 5.3288 -10.4392 -1.6533 28 6 4.1402 -9.9292 -0.9446 29 8 3.5166 -10.6286 -0.1656 30 6 1.9335 -3.7312 -0.0017 31 1 -0.4850 0.8400 0.0004 32 1 -0.5569 -2.0513 -0.8862 33 1 -0.5550 -2.0854 0.8992 34 1 -1.2979 -4.2508 -0.6823 35 1 -0.6341 -4.4215 0.9742 36 1 0.1497 -6.6807 -0.4020 37 1 1.1860 -6.1173 0.9311 38 1 2.7235 -6.1515 -1.4376 39 1 4.1879 -6.7758 -2.3113 40 1 7.6630 -9.4018 -3.8902 41 1 8.4371 -11.7008 -3.5351 42 1 7.2509 -13.1956 -1.9834 43 1 5.2625 -12.4021 -0.7755 44 1 2.1654 -4.0428 1.0167 45 1 2.8336 -3.7400 -0.6163 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028652421.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:03:29 Heat of formation + Delta-G solvation = 0.042203 kcal Electronic energy + Delta-G solvation = -28310.792836 eV Core-core repulsion = 24293.882322 eV Total energy + Delta-G solvation = -4016.910514 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.43991 -39.46440 -38.12663 -37.74891 -37.33941 -34.53616 -32.80266 -32.17668 -31.29832 -30.41390 -29.62763 -28.18832 -25.69358 -24.60771 -24.45841 -23.29224 -22.71054 -21.06460 -20.02108 -19.96781 -18.91057 -18.61822 -18.16911 -16.88628 -16.48441 -16.11588 -15.77992 -15.58065 -15.12347 -14.98648 -14.76505 -14.66344 -14.39042 -14.27859 -13.83440 -13.63724 -13.54730 -13.07437 -12.96618 -12.52225 -12.42446 -12.33032 -11.98425 -11.79734 -11.73086 -11.36626 -10.91861 -10.81449 -10.38226 -10.16808 -10.07344 -9.95599 -9.85778 -9.75921 -9.67167 -9.52062 -9.38836 -8.87288 -8.61755 -8.16932 -6.84582 -5.72920 -3.06585 0.29253 0.38078 1.23016 2.28255 2.45960 3.18682 3.22199 3.37209 3.42285 3.44748 3.73998 3.77969 4.10119 4.27761 4.40671 4.47301 4.50987 4.65501 4.78424 5.00915 5.11382 5.25037 5.25814 5.33598 5.41421 5.45755 5.50344 5.55489 5.71622 5.86179 5.91966 6.01702 6.07700 6.10051 6.14338 6.36943 6.41292 6.47305 6.48118 6.51826 6.56071 6.71653 6.92344 7.54244 7.63604 7.64869 7.71583 7.81736 8.24744 8.44751 9.20366 9.80929 10.47338 11.38733 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.018127 B = 0.002149 C = 0.001960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.310087 B =13026.206236 C =14285.835731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.009 4.009 3 Si 0.912 3.088 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.229 4.229 8 H 0.077 0.923 9 N -0.607 5.607 10 C 0.177 3.823 11 C -0.135 4.135 12 C -0.117 4.117 13 H 0.078 0.922 14 C 0.135 3.865 15 N -0.730 5.730 16 C 0.573 3.427 17 O -0.520 6.520 18 C -0.323 4.323 19 C 0.211 3.789 20 N -0.596 5.596 21 H 0.423 0.577 22 C 0.180 3.820 23 C -0.168 4.168 24 C -0.061 4.061 25 C -0.153 4.153 26 C -0.032 4.032 27 C -0.182 4.182 28 C 0.431 3.569 29 O -0.448 6.448 30 C 0.142 3.858 31 H 0.252 0.748 32 H 0.046 0.954 33 H 0.043 0.957 34 H 0.061 0.939 35 H 0.060 0.940 36 H 0.066 0.934 37 H 0.069 0.931 38 H 0.392 0.608 39 H 0.170 0.830 40 H 0.135 0.865 41 H 0.133 0.867 42 H 0.132 0.868 43 H 0.141 0.859 44 H 0.020 0.980 45 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.454 -20.968 -11.058 28.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.206 4.206 3 Si 0.742 3.258 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.357 4.357 8 H 0.095 0.905 9 N -0.333 5.333 10 C 0.053 3.947 11 C -0.174 4.174 12 C -0.137 4.137 13 H 0.097 0.903 14 C 0.012 3.988 15 N -0.383 5.383 16 C 0.360 3.640 17 O -0.395 6.395 18 C -0.335 4.335 19 C 0.077 3.923 20 N -0.204 5.204 21 H 0.260 0.740 22 C 0.079 3.921 23 C -0.188 4.188 24 C -0.080 4.080 25 C -0.172 4.172 26 C -0.051 4.051 27 C -0.186 4.186 28 C 0.312 3.688 29 O -0.324 6.324 30 C 0.016 3.984 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.061 0.939 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.084 0.916 37 H 0.087 0.913 38 H 0.226 0.774 39 H 0.187 0.813 40 H 0.153 0.847 41 H 0.151 0.849 42 H 0.150 0.850 43 H 0.159 0.841 44 H 0.038 0.962 45 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 14.548 -21.637 -9.995 27.923 hybrid contribution 1.008 1.685 -0.736 2.097 sum 15.556 -19.952 -10.731 27.481 Atomic orbital electron populations 1.69968 1.04869 1.25029 1.56989 1.24814 0.95735 0.97689 1.02313 0.86122 0.78584 0.83561 0.77493 1.21659 1.21660 1.20742 1.19036 0.90362 0.82467 1.43858 0.90545 1.44489 1.01775 0.99862 1.87196 1.21147 0.84272 0.88234 1.01088 1.22858 0.95440 0.99300 0.99821 1.22616 0.98592 0.92119 1.00353 0.90324 1.21380 0.87140 0.92906 0.97418 1.45966 1.31877 1.12970 1.47492 1.17358 0.83461 0.81353 0.81834 1.90855 1.53497 1.60382 1.34776 1.21985 1.03736 0.98439 1.09387 1.22073 0.84149 0.97929 0.88134 1.40837 1.26398 1.11768 1.41367 0.74032 1.17908 0.94372 0.83938 0.95867 1.20727 0.96919 0.97739 1.03453 1.21127 0.98542 0.92510 0.95847 1.21188 0.96681 1.00757 0.98594 1.21191 0.94310 0.93463 0.96096 1.20327 1.00279 0.95775 1.02181 1.19344 0.82704 0.86139 0.80644 1.90754 1.52221 1.59116 1.30347 1.21585 0.93854 0.86151 0.96805 0.93740 0.93577 0.93911 0.91983 0.92122 0.91604 0.91274 0.77352 0.81342 0.84746 0.84916 0.84970 0.84089 0.96204 0.94840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.87 10.31 55.49 0.57 -26.30 16 2 C -0.01 -0.26 5.49 -17.43 -0.10 -0.35 16 3 Si 0.91 21.78 29.55 -169.99 -5.02 16.75 16 4 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.23 -6.26 10.28 -15.06 -0.15 -6.42 16 8 H 0.08 2.00 7.83 -52.48 -0.41 1.59 16 9 N -0.61 -15.15 3.39 -170.07 -0.58 -15.73 16 10 C 0.18 4.24 5.37 -3.06 -0.02 4.23 16 11 C -0.14 -2.46 6.42 -24.89 -0.16 -2.62 16 12 C -0.12 -1.90 3.05 -88.46 -0.27 -2.17 16 13 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 14 C 0.13 2.00 5.13 -4.04 -0.02 1.98 16 15 N -0.73 -9.40 5.45 -61.47 -0.34 -9.74 16 16 C 0.57 8.85 7.76 -12.65 -0.10 8.75 16 17 O -0.52 -10.61 15.55 -14.89 -0.23 -10.85 16 18 C -0.32 -4.00 6.04 -102.78 -0.62 -4.62 16 19 C 0.21 1.46 10.65 -16.74 -0.18 1.28 16 20 N -0.60 -2.93 5.21 -10.42 -0.05 -2.98 16 21 H 0.42 0.41 8.73 -40.82 -0.36 0.06 16 22 C 0.18 1.29 6.66 -83.94 -0.56 0.73 16 23 C -0.17 -0.81 9.86 -39.38 -0.39 -1.20 16 24 C -0.06 -0.29 10.01 -39.56 -0.40 -0.69 16 25 C -0.15 -0.93 10.03 -39.57 -0.40 -1.33 16 26 C -0.03 -0.29 9.65 -39.30 -0.38 -0.67 16 27 C -0.18 -1.90 5.89 -104.81 -0.62 -2.52 16 28 C 0.43 6.18 7.15 -32.20 -0.23 5.95 16 29 O -0.45 -8.28 15.85 -15.07 -0.24 -8.52 16 30 C 0.14 2.78 6.65 -2.53 -0.02 2.76 16 31 H 0.25 7.15 8.31 -40.82 -0.34 6.82 16 32 H 0.05 1.21 7.38 -51.93 -0.38 0.83 16 33 H 0.04 1.14 7.51 -51.93 -0.39 0.75 16 34 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.06 1.06 8.04 -51.93 -0.42 0.64 16 36 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.07 1.13 7.96 -51.93 -0.41 0.71 16 38 H 0.39 3.78 6.48 -40.82 -0.26 3.51 16 39 H 0.17 0.59 6.31 -52.48 -0.33 0.26 16 40 H 0.13 0.25 8.06 -52.48 -0.42 -0.18 16 41 H 0.13 0.27 8.06 -52.49 -0.42 -0.15 16 42 H 0.13 0.51 8.06 -52.49 -0.42 0.08 16 43 H 0.14 1.28 7.78 -52.49 -0.41 0.88 16 44 H 0.02 0.41 7.91 -51.93 -0.41 0.00 16 45 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 373.71 15.07 5.63 5.63 Total: -1.00 -39.18 373.71 -10.74 -49.91 By element: Atomic # 1 Polarization: 4.59 SS G_CDS: -5.88 Total: -1.29 kcal Atomic # 6 Polarization: 7.71 SS G_CDS: -4.60 Total: 3.11 kcal Atomic # 7 Polarization: -54.36 SS G_CDS: -0.39 Total: -54.75 kcal Atomic # 8 Polarization: -18.89 SS G_CDS: -0.47 Total: -19.36 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -39.18 -10.74 -49.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028652421.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.955 kcal (2) G-P(sol) polarization free energy of solvation -39.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.913 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds