Wall clock time and date at job start Tue Mar 31 2020 23:55:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86799 * 120.00102 * 2 1 4 4 H 1.48500 * 109.47076 * 274.98708 * 3 2 1 5 5 H 1.48498 * 109.46809 * 34.98425 * 3 2 1 6 6 H 1.48499 * 109.47087 * 154.98333 * 3 2 1 7 7 C 1.38813 * 120.00275 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00677 * 187.03461 * 7 2 1 9 9 N 1.36939 * 119.99732 * 7.02877 * 7 2 1 10 10 C 1.47020 * 125.65087 * 354.35924 * 9 7 2 11 11 C 1.54322 * 107.27467 * 179.20508 * 10 9 7 12 12 C 1.55164 * 102.93965 * 337.80777 * 11 10 9 13 13 H 1.09004 * 111.00584 * 277.42534 * 12 11 10 14 14 C 1.52998 * 111.00283 * 153.57810 * 12 11 10 15 15 N 1.46504 * 109.47171 * 181.35255 * 14 12 11 16 16 C 1.34773 * 120.00257 * 180.02562 * 15 14 12 17 17 O 1.21645 * 119.99943 * 359.97438 * 16 15 14 18 18 C 1.47145 * 120.00100 * 179.97438 * 16 15 14 19 19 C 1.39030 * 121.10152 * 359.72156 * 18 16 15 20 20 N 1.32074 * 121.41069 * 179.69741 * 19 18 16 21 21 C 1.31831 * 123.59464 * 0.60648 * 20 19 18 22 22 O 1.35255 * 119.60530 * 179.71712 * 21 20 19 23 23 C 1.41174 * 120.77853 * 359.69095 * 21 20 19 24 24 C 1.40123 * 122.10374 * 179.97438 * 23 21 20 25 25 C 1.36359 * 119.50577 * 180.02562 * 24 23 21 26 26 C 1.39180 * 121.05282 * 0.02562 * 25 24 23 27 27 C 1.36511 * 120.89890 * 359.97438 * 26 25 24 28 28 C 1.39621 * 119.43306 * 0.02562 * 27 26 25 29 29 C 1.47429 * 125.64625 * 174.66899 * 9 7 2 30 30 H 0.96992 * 120.00186 * 0.02562 * 1 2 3 31 31 H 1.09000 * 109.88144 * 298.62412 * 10 9 7 32 32 H 1.09003 * 109.87966 * 59.78894 * 10 9 7 33 33 H 1.08996 * 110.72497 * 219.44713 * 11 10 9 34 34 H 1.08993 * 110.87182 * 96.23712 * 11 10 9 35 35 H 1.09005 * 109.47074 * 301.34528 * 14 12 11 36 36 H 1.08999 * 109.47392 * 61.34922 * 14 12 11 37 37 H 0.96996 * 119.99481 * 359.97438 * 15 14 12 38 38 H 1.07999 * 119.29201 * 359.97084 * 19 18 16 39 39 H 0.96697 * 113.99736 * 269.96739 * 22 21 20 40 40 H 1.07996 * 120.25171 * 359.97438 * 24 23 21 41 41 H 1.07997 * 119.47491 * 180.02562 * 25 24 23 42 42 H 1.08010 * 119.55471 * 180.02562 * 26 25 24 43 43 H 1.07997 * 120.28638 * 179.97438 * 27 26 25 44 44 H 1.09002 * 110.36346 * 322.70225 * 29 9 7 45 45 H 1.08999 * 110.37028 * 84.91483 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3923 2.1072 -1.3948 5 1 1.5042 2.6199 0.8027 6 1 3.5964 1.4120 0.5921 7 6 2.0103 -1.2021 0.0005 8 1 3.0841 -1.2057 0.1151 9 7 1.3333 -2.3837 -0.1441 10 6 -0.1285 -2.5335 -0.1910 11 6 -0.4293 -4.0348 -0.3837 12 6 0.8870 -4.5764 -1.0013 13 1 0.9146 -4.4021 -2.0770 14 6 1.0712 -6.0618 -0.6839 15 7 2.3370 -6.5297 -1.2541 16 6 2.7115 -7.8151 -1.0993 17 8 1.9987 -8.5866 -0.4859 18 6 3.9826 -8.2852 -1.6725 19 6 4.8120 -7.4246 -2.3827 20 7 5.9569 -7.8385 -2.8946 21 6 6.3976 -9.0766 -2.7900 22 8 7.5809 -9.4144 -3.3511 23 6 5.6491 -10.0538 -2.0987 24 6 6.0906 -11.3775 -1.9709 25 6 5.3246 -12.2784 -1.2920 26 6 4.1103 -11.9044 -0.7239 27 6 3.6517 -10.6230 -0.8302 28 6 4.4128 -9.6768 -1.5192 29 6 1.9495 -3.7169 -0.2720 30 1 -0.4850 0.8400 -0.0004 31 1 -0.5671 -2.1845 0.7439 32 1 -0.5328 -1.9641 -1.0279 33 1 -1.2640 -4.1759 -1.0702 34 1 -0.6329 -4.5159 0.5729 35 1 1.0852 -6.2033 0.3968 36 1 0.2467 -6.6302 -1.1141 37 1 2.9051 -5.9145 -1.7435 38 1 4.5158 -6.3944 -2.5148 39 1 7.5089 -9.7245 -4.2642 40 1 7.0301 -11.6822 -2.4077 41 1 5.6655 -13.2984 -1.1935 42 1 3.5232 -12.6377 -0.1909 43 1 2.7078 -10.3437 -0.3858 44 1 2.8620 -3.6576 -0.8654 45 1 2.1645 -4.1316 0.7128 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028843749.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:55:42 Heat of formation + Delta-G solvation = 10.888773 kcal Electronic energy + Delta-G solvation = -28471.716665 eV Core-core repulsion = 24455.276493 eV Total energy + Delta-G solvation = -4016.440172 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.39357 -39.64709 -38.32114 -37.67179 -37.05415 -34.80257 -32.68304 -32.32286 -31.55210 -30.39787 -29.44659 -28.15782 -25.76591 -24.89673 -24.00244 -23.65446 -22.62569 -21.12638 -20.03567 -19.89216 -19.31482 -18.14160 -17.90273 -17.50699 -16.78216 -16.23327 -15.81800 -15.49120 -15.36394 -15.09840 -14.65309 -14.54090 -14.47138 -13.82006 -13.75276 -13.45105 -13.36068 -13.05354 -12.45559 -12.37683 -12.33847 -12.30503 -12.05243 -11.81141 -11.73838 -11.41602 -10.91673 -10.81859 -10.45931 -10.27515 -10.21709 -10.09467 -9.98001 -9.88462 -9.69335 -9.57476 -9.51152 -9.12562 -8.59053 -8.37576 -6.84806 -5.74149 -3.06632 -0.36552 0.49149 1.29776 2.36014 2.96410 3.00297 3.05825 3.39408 3.44869 3.46750 3.67319 4.06210 4.19354 4.31247 4.47001 4.48342 4.66577 4.70350 4.87639 5.03096 5.03995 5.19066 5.23873 5.29589 5.38894 5.51018 5.56118 5.64749 5.72500 5.85072 5.91498 5.97654 6.01684 6.09586 6.12494 6.30722 6.34245 6.46495 6.50025 6.51461 6.64398 6.87293 6.96017 7.37954 7.45793 7.53974 7.61962 7.81068 8.07040 8.24331 9.20244 9.80818 10.46940 11.38033 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.017518 B = 0.002271 C = 0.002054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.011321 B =12325.305045 C =13628.400179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.007 4.007 3 Si 0.910 3.090 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.230 4.230 8 H 0.078 0.922 9 N -0.606 5.606 10 C 0.176 3.824 11 C -0.134 4.134 12 C -0.119 4.119 13 H 0.081 0.919 14 C 0.133 3.867 15 N -0.715 5.715 16 C 0.568 3.432 17 O -0.538 6.538 18 C -0.184 4.184 19 C 0.150 3.850 20 N -0.515 5.515 21 C 0.383 3.617 22 O -0.475 6.475 23 C -0.131 4.131 24 C -0.082 4.082 25 C -0.121 4.121 26 C -0.093 4.093 27 C -0.112 4.112 28 C 0.024 3.976 29 C 0.141 3.859 30 H 0.252 0.748 31 H 0.041 0.959 32 H 0.049 0.951 33 H 0.062 0.938 34 H 0.060 0.940 35 H 0.072 0.928 36 H 0.069 0.931 37 H 0.402 0.598 38 H 0.165 0.835 39 H 0.407 0.593 40 H 0.137 0.863 41 H 0.129 0.871 42 H 0.131 0.869 43 H 0.169 0.831 44 H 0.036 0.964 45 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.059 -25.401 -7.019 27.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.203 4.203 3 Si 0.741 3.259 4 H -0.216 1.216 5 H -0.218 1.218 6 H -0.206 1.206 7 C -0.359 4.359 8 H 0.096 0.904 9 N -0.332 5.332 10 C 0.051 3.949 11 C -0.173 4.173 12 C -0.139 4.139 13 H 0.099 0.901 14 C 0.010 3.990 15 N -0.366 5.366 16 C 0.355 3.645 17 O -0.417 6.417 18 C -0.190 4.190 19 C 0.005 3.995 20 N -0.234 5.234 21 C 0.191 3.809 22 O -0.283 6.283 23 C -0.134 4.134 24 C -0.102 4.102 25 C -0.139 4.139 26 C -0.112 4.112 27 C -0.129 4.129 28 C 0.019 3.981 29 C 0.015 3.985 30 H 0.063 0.937 31 H 0.059 0.941 32 H 0.067 0.933 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.090 0.910 36 H 0.087 0.913 37 H 0.237 0.763 38 H 0.182 0.818 39 H 0.267 0.733 40 H 0.155 0.845 41 H 0.147 0.853 42 H 0.149 0.851 43 H 0.186 0.814 44 H 0.054 0.946 45 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 9.156 -24.865 -6.454 27.272 hybrid contribution 0.234 0.608 -0.271 0.706 sum 9.389 -24.257 -6.725 26.866 Atomic orbital electron populations 1.69972 1.04928 1.25076 1.56725 1.24825 0.95702 0.97698 1.02118 0.86124 0.78708 0.83601 0.77507 1.21594 1.21769 1.20623 1.19056 0.91120 0.82556 1.43127 0.90445 1.44481 1.01699 1.00913 1.86131 1.21164 0.84441 0.88382 1.00893 1.22850 0.95227 0.99664 0.99536 1.22635 0.98758 0.91702 1.00797 0.90076 1.21473 0.84235 0.94441 0.98877 1.46004 1.23946 1.10136 1.56503 1.17639 0.84667 0.82306 0.79896 1.90635 1.54520 1.54194 1.42348 1.21895 0.97934 0.94416 1.04724 1.22539 0.87234 0.99279 0.90475 1.66597 1.15586 1.17943 1.23255 1.19426 0.83833 0.87158 0.90495 1.84621 1.24995 1.85786 1.32917 1.18904 0.95376 0.95487 1.03651 1.20896 0.99738 0.91218 0.98366 1.21019 0.94925 1.00041 0.97911 1.21236 0.95714 0.96578 0.97719 1.21840 1.01597 0.92061 0.97395 1.18791 0.92490 0.92059 0.94754 1.21580 0.94028 0.86721 0.96199 0.93734 0.94100 0.93321 0.91933 0.92171 0.90991 0.91289 0.76285 0.81770 0.73255 0.84508 0.85328 0.85146 0.81396 0.94608 0.96315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.89 10.36 55.49 0.57 -26.31 16 2 C -0.01 -0.20 5.48 -17.43 -0.10 -0.29 16 3 Si 0.91 22.02 29.56 -169.99 -5.02 16.99 16 4 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.23 -6.37 10.26 -15.06 -0.15 -6.52 16 8 H 0.08 2.07 7.84 -52.49 -0.41 1.66 16 9 N -0.61 -15.17 3.39 -170.07 -0.58 -15.74 16 10 C 0.18 4.17 5.38 -3.07 -0.02 4.16 16 11 C -0.13 -2.36 6.42 -24.89 -0.16 -2.52 16 12 C -0.12 -1.89 3.10 -88.47 -0.27 -2.16 16 13 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 14 C 0.13 1.80 5.12 -4.04 -0.02 1.78 16 15 N -0.72 -8.74 5.36 -61.47 -0.33 -9.06 16 16 C 0.57 7.52 7.76 -12.65 -0.10 7.42 16 17 O -0.54 -8.32 13.72 5.24 0.07 -8.25 16 18 C -0.18 -2.21 6.06 -102.67 -0.62 -2.83 16 19 C 0.15 1.65 10.70 -17.15 -0.18 1.46 16 20 N -0.52 -6.03 10.25 -12.66 -0.13 -6.16 16 21 C 0.38 3.93 7.79 -16.44 -0.13 3.80 16 22 O -0.47 -3.64 12.80 -17.46 -0.22 -3.87 16 23 C -0.13 -1.33 5.75 -106.78 -0.61 -1.94 16 24 C -0.08 -0.64 9.58 -39.55 -0.38 -1.01 16 25 C -0.12 -0.85 9.95 -39.91 -0.40 -1.25 16 26 C -0.09 -0.77 9.96 -39.85 -0.40 -1.17 16 27 C -0.11 -1.23 9.32 -39.69 -0.37 -1.60 16 28 C 0.02 0.28 5.90 -104.77 -0.62 -0.34 16 29 C 0.14 2.75 6.41 -2.53 -0.02 2.73 16 30 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 31 H 0.04 1.08 7.62 -51.93 -0.40 0.69 16 32 H 0.05 1.28 7.29 -51.93 -0.38 0.90 16 33 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 34 H 0.06 1.00 8.04 -51.93 -0.42 0.58 16 35 H 0.07 1.05 8.10 -51.93 -0.42 0.63 16 36 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.40 4.22 6.42 -40.82 -0.26 3.95 16 38 H 0.17 1.44 6.42 -52.49 -0.34 1.10 16 39 H 0.41 0.95 9.06 45.56 0.41 1.36 16 40 H 0.14 0.72 7.66 -52.49 -0.40 0.32 16 41 H 0.13 0.55 8.06 -52.49 -0.42 0.13 16 42 H 0.13 0.77 8.06 -52.48 -0.42 0.35 16 43 H 0.17 2.07 5.23 -52.49 -0.27 1.80 16 44 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.02 0.38 8.01 -51.93 -0.42 -0.04 16 LS Contribution 370.40 15.07 5.58 5.58 Total: -1.00 -34.64 370.40 -9.58 -44.22 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: -4.97 Total: 2.88 kcal Atomic # 6 Polarization: 4.27 SS G_CDS: -4.55 Total: -0.27 kcal Atomic # 7 Polarization: -56.82 SS G_CDS: -0.46 Total: -57.28 kcal Atomic # 8 Polarization: -11.97 SS G_CDS: -0.15 Total: -12.12 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -34.64 -9.58 -44.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028843749.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.107 kcal (2) G-P(sol) polarization free energy of solvation -34.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.218 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds