Wall clock time and date at job start Tue Mar 31 2020 23:55:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86799 * 120.00102 * 2 1 4 4 H 1.48500 * 109.47076 * 274.98708 * 3 2 1 5 5 H 1.48498 * 109.46809 * 34.98425 * 3 2 1 6 6 H 1.48499 * 109.47087 * 154.98333 * 3 2 1 7 7 C 1.38813 * 120.00275 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00677 * 187.03461 * 7 2 1 9 9 N 1.36939 * 119.99732 * 7.02877 * 7 2 1 10 10 C 1.47020 * 125.65087 * 354.35924 * 9 7 2 11 11 C 1.54322 * 107.27467 * 179.20508 * 10 9 7 12 12 C 1.55164 * 102.93965 * 337.80777 * 11 10 9 13 13 H 1.09004 * 111.00584 * 277.42534 * 12 11 10 14 14 C 1.52998 * 111.00283 * 153.57810 * 12 11 10 15 15 N 1.46504 * 109.47171 * 181.35255 * 14 12 11 16 16 C 1.34773 * 120.00257 * 180.02562 * 15 14 12 17 17 O 1.21645 * 119.99943 * 359.97438 * 16 15 14 18 18 C 1.47145 * 120.00100 * 179.97438 * 16 15 14 19 19 C 1.39030 * 121.10152 * 359.72156 * 18 16 15 20 20 N 1.32074 * 121.41069 * 179.69741 * 19 18 16 21 21 C 1.31831 * 123.59464 * 0.60648 * 20 19 18 22 22 O 1.35255 * 119.60530 * 179.71712 * 21 20 19 23 23 C 1.41174 * 120.77853 * 359.69095 * 21 20 19 24 24 C 1.40123 * 122.10374 * 179.97438 * 23 21 20 25 25 C 1.36359 * 119.50577 * 180.02562 * 24 23 21 26 26 C 1.39180 * 121.05282 * 0.02562 * 25 24 23 27 27 C 1.36511 * 120.89890 * 359.97438 * 26 25 24 28 28 C 1.39621 * 119.43306 * 0.02562 * 27 26 25 29 29 C 1.47429 * 125.64625 * 174.66899 * 9 7 2 30 30 H 0.96992 * 120.00186 * 0.02562 * 1 2 3 31 31 H 1.09000 * 109.88144 * 298.62412 * 10 9 7 32 32 H 1.09003 * 109.87966 * 59.78894 * 10 9 7 33 33 H 1.08996 * 110.72497 * 219.44713 * 11 10 9 34 34 H 1.08993 * 110.87182 * 96.23712 * 11 10 9 35 35 H 1.09005 * 109.47074 * 301.34528 * 14 12 11 36 36 H 1.08999 * 109.47392 * 61.34922 * 14 12 11 37 37 H 0.96996 * 119.99481 * 359.97438 * 15 14 12 38 38 H 1.07999 * 119.29201 * 359.97084 * 19 18 16 39 39 H 0.96697 * 113.99736 * 269.96739 * 22 21 20 40 40 H 1.07996 * 120.25171 * 359.97438 * 24 23 21 41 41 H 1.07997 * 119.47491 * 180.02562 * 25 24 23 42 42 H 1.08010 * 119.55471 * 180.02562 * 26 25 24 43 43 H 1.07997 * 120.28638 * 179.97438 * 27 26 25 44 44 H 1.09002 * 110.36346 * 322.70225 * 29 9 7 45 45 H 1.08999 * 110.37028 * 84.91483 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3923 2.1072 -1.3948 5 1 1.5042 2.6199 0.8027 6 1 3.5964 1.4120 0.5921 7 6 2.0103 -1.2021 0.0005 8 1 3.0841 -1.2057 0.1151 9 7 1.3333 -2.3837 -0.1441 10 6 -0.1285 -2.5335 -0.1910 11 6 -0.4293 -4.0348 -0.3837 12 6 0.8870 -4.5764 -1.0013 13 1 0.9146 -4.4021 -2.0770 14 6 1.0712 -6.0618 -0.6839 15 7 2.3370 -6.5297 -1.2541 16 6 2.7115 -7.8151 -1.0993 17 8 1.9987 -8.5866 -0.4859 18 6 3.9826 -8.2852 -1.6725 19 6 4.8120 -7.4246 -2.3827 20 7 5.9569 -7.8385 -2.8946 21 6 6.3976 -9.0766 -2.7900 22 8 7.5809 -9.4144 -3.3511 23 6 5.6491 -10.0538 -2.0987 24 6 6.0906 -11.3775 -1.9709 25 6 5.3246 -12.2784 -1.2920 26 6 4.1103 -11.9044 -0.7239 27 6 3.6517 -10.6230 -0.8302 28 6 4.4128 -9.6768 -1.5192 29 6 1.9495 -3.7169 -0.2720 30 1 -0.4850 0.8400 -0.0004 31 1 -0.5671 -2.1845 0.7439 32 1 -0.5328 -1.9641 -1.0279 33 1 -1.2640 -4.1759 -1.0702 34 1 -0.6329 -4.5159 0.5729 35 1 1.0852 -6.2033 0.3968 36 1 0.2467 -6.6302 -1.1141 37 1 2.9051 -5.9145 -1.7435 38 1 4.5158 -6.3944 -2.5148 39 1 7.5089 -9.7245 -4.2642 40 1 7.0301 -11.6822 -2.4077 41 1 5.6655 -13.2984 -1.1935 42 1 3.5232 -12.6377 -0.1909 43 1 2.7078 -10.3437 -0.3858 44 1 2.8620 -3.6576 -0.8654 45 1 2.1645 -4.1316 0.7128 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028843749.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:55:42 Heat of formation + Delta-G solvation = -15.234950 kcal Electronic energy + Delta-G solvation = -28472.849475 eV Core-core repulsion = 24455.276493 eV Total energy + Delta-G solvation = -4017.572981 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.14871 -40.64456 -39.28700 -38.89458 -37.78208 -36.10962 -34.37179 -33.16145 -32.24054 -31.80847 -30.72080 -29.58611 -27.33715 -26.01241 -24.99366 -24.68564 -23.49075 -22.24783 -21.68367 -21.21531 -20.06562 -19.02196 -18.86093 -18.53697 -18.23149 -17.21369 -16.74663 -16.68755 -16.53288 -16.11758 -16.03042 -15.69513 -15.34951 -15.25660 -14.76085 -14.46223 -14.37045 -14.02495 -13.93800 -13.83480 -13.40423 -13.16696 -13.04085 -12.99610 -12.91400 -12.76571 -12.64192 -12.47086 -12.00961 -11.88086 -11.85097 -11.54499 -11.45402 -11.02722 -11.01441 -10.68244 -10.46869 -10.21986 -10.14927 -9.10849 -8.88780 -7.86296 -5.20363 -1.10877 -0.21514 0.59299 1.45987 1.47426 1.56305 1.56402 2.02066 2.14797 2.38735 2.49487 2.93042 3.30347 3.32708 3.45973 3.58910 3.61267 3.78336 3.83360 3.95060 4.02379 4.04212 4.11656 4.27747 4.39181 4.44696 4.51795 4.62600 4.63615 4.72586 4.81349 4.92503 4.94135 5.02938 5.09509 5.09899 5.28256 5.31931 5.41767 5.43219 5.47532 5.53231 5.68483 5.78948 5.85176 6.20753 6.41290 6.48407 6.72351 7.09635 7.10769 7.78599 8.43103 9.24754 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.017518 B = 0.002271 C = 0.002054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.011321 B =12325.305045 C =13628.400179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.066 4.066 3 Si 0.976 3.024 4 H -0.286 1.286 5 H -0.296 1.296 6 H -0.268 1.268 7 C -0.242 4.242 8 H 0.082 0.918 9 N -0.629 5.629 10 C 0.181 3.819 11 C -0.121 4.121 12 C -0.096 4.096 13 H 0.091 0.909 14 C 0.146 3.854 15 N -0.710 5.710 16 C 0.570 3.430 17 O -0.565 6.565 18 C -0.208 4.208 19 C 0.155 3.845 20 N -0.544 5.544 21 C 0.395 3.605 22 O -0.476 6.476 23 C -0.146 4.146 24 C -0.075 4.075 25 C -0.120 4.120 26 C -0.081 4.081 27 C -0.143 4.143 28 C 0.006 3.994 29 C 0.136 3.864 30 H 0.247 0.753 31 H 0.001 0.999 32 H 0.015 0.985 33 H 0.087 0.913 34 H 0.072 0.928 35 H 0.063 0.937 36 H 0.081 0.919 37 H 0.410 0.590 38 H 0.180 0.820 39 H 0.431 0.569 40 H 0.166 0.834 41 H 0.165 0.835 42 H 0.153 0.847 43 H 0.148 0.852 44 H 0.049 0.951 45 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.179 -27.958 -8.054 31.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.259 4.259 3 Si 0.805 3.195 4 H -0.213 1.213 5 H -0.223 1.223 6 H -0.193 1.193 7 C -0.371 4.371 8 H 0.100 0.900 9 N -0.355 5.355 10 C 0.056 3.944 11 C -0.160 4.160 12 C -0.116 4.116 13 H 0.110 0.890 14 C 0.022 3.978 15 N -0.361 5.361 16 C 0.358 3.642 17 O -0.447 6.447 18 C -0.213 4.213 19 C 0.010 3.990 20 N -0.263 5.263 21 C 0.203 3.797 22 O -0.288 6.288 23 C -0.150 4.150 24 C -0.094 4.094 25 C -0.137 4.137 26 C -0.100 4.100 27 C -0.161 4.161 28 C 0.002 3.998 29 C 0.011 3.989 30 H 0.056 0.944 31 H 0.019 0.981 32 H 0.033 0.967 33 H 0.105 0.895 34 H 0.090 0.910 35 H 0.082 0.918 36 H 0.099 0.901 37 H 0.247 0.753 38 H 0.197 0.803 39 H 0.296 0.704 40 H 0.183 0.817 41 H 0.182 0.818 42 H 0.171 0.829 43 H 0.165 0.835 44 H 0.067 0.933 45 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges 11.315 -27.459 -7.523 30.637 hybrid contribution -0.306 1.255 0.049 1.293 sum 11.009 -26.204 -7.474 29.389 Atomic orbital electron populations 1.70192 1.06323 1.25262 1.58118 1.25663 0.96584 1.01035 1.02658 0.85090 0.77820 0.79301 0.77329 1.21256 1.22310 1.19301 1.19454 0.91629 0.83928 1.42129 0.90010 1.44814 1.02531 1.02229 1.85954 1.20944 0.83871 0.92096 0.97494 1.22709 0.97007 0.95161 1.01127 1.22434 0.96038 0.92421 1.00708 0.89023 1.21235 0.85346 0.92661 0.98558 1.45880 1.23634 1.10171 1.56435 1.17831 0.84903 0.82087 0.79362 1.90627 1.55476 1.54906 1.43644 1.21779 0.97830 0.95208 1.06513 1.22748 0.86903 0.99759 0.89549 1.66669 1.16160 1.18896 1.24615 1.19592 0.83796 0.86821 0.89501 1.84566 1.23678 1.85772 1.34787 1.19082 0.95046 0.96743 1.04116 1.21286 1.00592 0.90047 0.97504 1.21418 0.93972 1.01604 0.96730 1.21581 0.96207 0.95784 0.96470 1.21741 1.01579 0.93509 0.99277 1.19007 0.93424 0.92106 0.95313 1.21772 0.95478 0.84878 0.96778 0.94415 0.98083 0.96659 0.89485 0.90973 0.91843 0.90061 0.75256 0.80301 0.70435 0.81684 0.81777 0.82922 0.83454 0.93275 0.96475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.57 10.36 21.65 0.22 -57.35 16 2 C -0.07 -3.80 5.48 84.86 0.46 -3.34 16 3 Si 0.98 45.99 29.56 68.60 2.03 48.02 16 4 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 5 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 6 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 7 C -0.24 -13.59 10.26 84.03 0.86 -12.73 16 8 H 0.08 4.38 7.84 -2.91 -0.02 4.36 16 9 N -0.63 -31.97 3.39 -691.98 -2.35 -34.32 16 10 C 0.18 8.86 5.38 86.73 0.47 9.33 16 11 C -0.12 -4.18 6.42 31.78 0.20 -3.98 16 12 C -0.10 -2.92 3.10 -9.40 -0.03 -2.95 16 13 H 0.09 2.64 8.14 -2.38 -0.02 2.63 16 14 C 0.15 3.74 5.12 86.38 0.44 4.18 16 15 N -0.71 -16.69 5.36 -466.63 -2.50 -19.19 16 16 C 0.57 15.08 7.76 86.58 0.67 15.75 16 17 O -0.57 -17.81 13.72 -4.17 -0.06 -17.86 16 18 C -0.21 -4.98 6.06 -18.60 -0.11 -5.09 16 19 C 0.16 3.33 10.70 84.85 0.91 4.24 16 20 N -0.54 -12.17 10.25 -307.29 -3.15 -15.32 16 21 C 0.39 7.44 7.79 85.41 0.67 8.10 16 22 O -0.48 -6.04 12.80 -85.39 -1.09 -7.13 16 23 C -0.15 -2.73 5.75 -21.26 -0.12 -2.85 16 24 C -0.07 -0.92 9.58 22.29 0.21 -0.70 16 25 C -0.12 -1.27 9.95 22.06 0.22 -1.05 16 26 C -0.08 -1.19 9.96 22.09 0.22 -0.97 16 27 C -0.14 -3.13 9.32 22.20 0.21 -2.92 16 28 C 0.01 0.15 5.90 -19.96 -0.12 0.03 16 29 C 0.14 5.22 6.41 86.85 0.56 5.78 16 30 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16 31 H 0.00 0.05 7.62 -2.39 -0.02 0.03 16 32 H 0.02 0.83 7.29 -2.39 -0.02 0.82 16 33 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16 34 H 0.07 2.33 8.04 -2.39 -0.02 2.31 16 35 H 0.06 1.78 8.10 -2.38 -0.02 1.76 16 36 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 37 H 0.41 8.11 6.42 -92.71 -0.60 7.51 16 38 H 0.18 2.99 6.42 -2.91 -0.02 2.97 16 39 H 0.43 0.72 9.06 -74.06 -0.67 0.05 16 40 H 0.17 1.02 7.66 -2.91 -0.02 1.00 16 41 H 0.16 0.59 8.06 -2.91 -0.02 0.57 16 42 H 0.15 1.43 8.06 -2.91 -0.02 1.41 16 43 H 0.15 3.81 5.23 -2.91 -0.02 3.79 16 44 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 45 H 0.02 0.68 8.01 -2.39 -0.02 0.66 16 Total: -1.00 -78.19 370.40 -1.39 -79.58 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: -0.21 Total: 12.76 kcal Atomic # 6 Polarization: 5.10 SS G_CDS: 5.72 Total: 10.82 kcal Atomic # 7 Polarization: -118.41 SS G_CDS: -7.78 Total: -126.18 kcal Atomic # 8 Polarization: -23.85 SS G_CDS: -1.15 Total: -25.00 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 2.03 Total: 48.02 kcal Total: -78.19 -1.39 -79.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028843749.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.349 kcal (2) G-P(sol) polarization free energy of solvation -78.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds