Wall clock time and date at job start Tue Mar 31 2020 23:58:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86793 * 119.99612 * 2 1 4 4 H 1.48501 * 109.47251 * 269.72669 * 3 2 1 5 5 H 1.48504 * 109.47315 * 29.72459 * 3 2 1 6 6 H 1.48503 * 109.47374 * 149.72700 * 3 2 1 7 7 C 1.38811 * 119.99894 * 179.72590 * 2 1 3 8 8 H 1.08004 * 119.99269 * 196.40364 * 7 2 1 9 9 N 1.36938 * 120.00369 * 16.40694 * 7 2 1 10 10 C 1.47152 * 120.98223 * 26.74442 * 9 7 2 11 11 C 1.53291 * 108.38463 * 129.44250 * 10 9 7 12 12 O 1.42958 * 109.22268 * 52.30270 * 11 10 9 13 13 C 1.42965 * 114.16766 * 297.42018 * 12 11 10 14 14 H 1.08997 * 109.51063 * 302.65417 * 13 12 11 15 15 C 1.52994 * 109.51183 * 182.55476 * 13 12 11 16 16 N 1.46501 * 109.47195 * 65.00078 * 15 13 12 17 17 C 1.34783 * 119.99965 * 179.97438 * 16 15 13 18 18 O 1.21595 * 119.99913 * 0.02562 * 17 16 15 19 19 C 1.47441 * 119.99899 * 179.97438 * 17 16 15 20 20 C 1.38954 * 121.16924 * 359.72346 * 19 17 16 21 21 N 1.32204 * 121.31250 * 179.70118 * 20 19 17 22 22 C 1.31196 * 123.69849 * 0.60712 * 21 20 19 23 23 C 1.40393 * 120.91426 * 359.68848 * 22 21 20 24 24 C 1.40394 * 122.14314 * 180.02562 * 23 22 21 25 25 C 1.36233 * 119.48435 * 179.97438 * 24 23 22 26 26 C 1.39293 * 121.10353 * 0.02562 * 25 24 23 27 27 C 1.36437 * 120.95157 * 359.97438 * 26 25 24 28 28 C 1.39699 * 119.43370 * 359.97438 * 27 26 25 29 29 C 1.47146 * 120.98166 * 206.46273 * 9 7 2 30 30 H 0.97001 * 120.00132 * 0.27220 * 1 2 3 31 31 H 1.08995 * 109.68009 * 249.17277 * 10 9 7 32 32 H 1.08998 * 109.67837 * 9.67797 * 10 9 7 33 33 H 1.09002 * 109.50962 * 172.22809 * 11 10 9 34 34 H 1.08996 * 109.51452 * 292.32644 * 11 10 9 35 35 H 1.09002 * 109.47062 * 184.99823 * 15 13 12 36 36 H 1.08995 * 109.47304 * 304.99761 * 15 13 12 37 37 H 0.97002 * 120.00114 * 359.97438 * 16 15 13 38 38 H 1.07997 * 119.34550 * 359.97196 * 20 19 17 39 39 H 1.08002 * 119.54284 * 179.67566 * 22 21 20 40 40 H 1.07994 * 120.26195 * 359.93911 * 24 23 22 41 41 H 1.07997 * 119.44692 * 180.02562 * 25 24 23 42 42 H 1.08004 * 119.52556 * 179.97438 * 26 25 24 43 43 H 1.07997 * 120.28941 * 180.02562 * 27 26 25 44 44 H 1.09004 * 109.67983 * 350.28057 * 29 9 7 45 45 H 1.09002 * 109.68257 * 110.83074 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.5034 2.0431 -1.4001 5 1 1.4446 2.6544 0.6942 6 1 3.5448 1.4420 0.7058 7 6 2.0103 -1.2021 0.0058 8 1 3.0573 -1.2198 0.2700 9 7 1.3675 -2.3655 -0.3236 10 6 0.1949 -2.3576 -1.2127 11 6 0.4201 -3.3942 -2.3192 12 8 0.7584 -4.6501 -1.7259 13 6 1.9747 -4.6339 -0.9748 14 1 2.7944 -4.3101 -1.6162 15 6 2.2659 -6.0387 -0.4434 16 7 2.5173 -6.9437 -1.5676 17 6 2.7983 -8.2418 -1.3381 18 8 2.8427 -8.6617 -0.1978 19 6 3.0508 -9.1527 -2.4696 20 6 2.9996 -8.7002 -3.7824 21 7 3.2312 -9.5132 -4.7989 22 6 3.5108 -10.7877 -4.6625 23 6 3.5885 -11.3770 -3.3906 24 6 3.8862 -12.7377 -3.2148 25 6 3.9484 -13.2532 -1.9553 26 6 3.7209 -12.4528 -0.8382 27 6 3.4292 -11.1268 -0.9727 28 6 3.3586 -10.5655 -2.2500 29 6 1.8325 -3.6612 0.1961 30 1 -0.4850 0.8400 -0.0040 31 1 -0.6985 -2.6155 -0.6442 32 1 0.0759 -1.3682 -1.6544 33 1 -0.4913 -3.5030 -2.9071 34 1 1.2335 -3.0655 -2.9661 35 1 3.1439 -6.0083 0.2019 36 1 1.4085 -6.3966 0.1265 37 1 2.4816 -6.6087 -2.4773 38 1 2.7704 -7.6628 -3.9761 39 1 3.6834 -11.3920 -5.5409 40 1 4.0641 -13.3710 -4.0713 41 1 4.1779 -14.2999 -1.8207 42 1 3.7762 -12.8882 0.1487 43 1 3.2551 -10.5161 -0.0992 44 1 2.7979 -3.5350 0.6863 45 1 1.1068 -4.0528 0.9089 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035613458.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:58:57 Heat of formation + Delta-G solvation = 6.256805 kcal Electronic energy + Delta-G solvation = -28568.447117 eV Core-core repulsion = 24551.806088 eV Total energy + Delta-G solvation = -4016.641029 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.16460 -39.49498 -38.44701 -37.67002 -35.04858 -34.35522 -33.11383 -31.69070 -31.48891 -30.88961 -29.82763 -27.57834 -25.95938 -24.72057 -23.81038 -23.26046 -22.94391 -21.77627 -20.96161 -19.70761 -18.31809 -17.84707 -17.67809 -16.93018 -16.29501 -16.09206 -15.80416 -15.25895 -15.14997 -15.03671 -14.67894 -14.44916 -14.20759 -14.07746 -13.88224 -13.64578 -13.24504 -13.09100 -13.03220 -12.77372 -12.50550 -12.42738 -12.24378 -11.75072 -11.60161 -11.15428 -10.89790 -10.76523 -10.45212 -10.36790 -10.29271 -10.24383 -10.02479 -9.73320 -9.55740 -9.42539 -9.15251 -9.11065 -8.58636 -8.42591 -6.79837 -5.87989 -3.32548 -0.25636 0.55939 1.36547 2.54788 2.97406 3.00828 3.32074 3.39091 3.40415 3.78063 3.91409 4.16868 4.19017 4.35041 4.36051 4.39731 4.52770 4.71135 4.84395 4.91461 5.06102 5.15971 5.27518 5.30399 5.41670 5.42813 5.47542 5.63236 5.72560 5.76593 5.80279 5.96552 6.03405 6.09721 6.14839 6.21681 6.26003 6.32408 6.41245 6.43984 6.55871 6.70363 7.05837 7.38500 7.47980 7.54345 7.66975 7.80063 8.08094 8.29531 9.07396 9.69831 10.26526 11.20172 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.026311 B = 0.002072 C = 0.002003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.958138 B =13510.157761 C =13973.023864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.002 3.998 3 Si 0.907 3.093 4 H -0.287 1.287 5 H -0.290 1.290 6 H -0.278 1.278 7 C -0.256 4.256 8 H 0.069 0.931 9 N -0.594 5.594 10 C 0.139 3.861 11 C 0.039 3.961 12 O -0.390 6.390 13 C 0.064 3.936 14 H 0.059 0.941 15 C 0.131 3.869 16 N -0.711 5.711 17 C 0.565 3.435 18 O -0.537 6.537 19 C -0.171 4.171 20 C 0.123 3.877 21 N -0.496 5.496 22 C 0.175 3.825 23 C -0.122 4.122 24 C -0.090 4.090 25 C -0.119 4.119 26 C -0.098 4.098 27 C -0.110 4.110 28 C 0.012 3.988 29 C 0.122 3.878 30 H 0.255 0.745 31 H 0.029 0.971 32 H 0.094 0.906 33 H 0.082 0.918 34 H 0.041 0.959 35 H 0.084 0.916 36 H 0.079 0.921 37 H 0.403 0.597 38 H 0.160 0.840 39 H 0.166 0.834 40 H 0.135 0.865 41 H 0.127 0.873 42 H 0.129 0.871 43 H 0.166 0.834 44 H 0.064 0.936 45 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.141 -24.535 -8.303 26.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.196 4.196 3 Si 0.736 3.264 4 H -0.214 1.214 5 H -0.216 1.216 6 H -0.204 1.204 7 C -0.385 4.385 8 H 0.087 0.913 9 N -0.317 5.317 10 C 0.013 3.987 11 C -0.038 4.038 12 O -0.309 6.309 13 C 0.004 3.996 14 H 0.077 0.923 15 C 0.007 3.993 16 N -0.361 5.361 17 C 0.352 3.648 18 O -0.416 6.416 19 C -0.176 4.176 20 C -0.022 4.022 21 N -0.203 5.203 22 C 0.003 3.997 23 C -0.124 4.124 24 C -0.110 4.110 25 C -0.137 4.137 26 C -0.118 4.118 27 C -0.127 4.127 28 C 0.007 3.993 29 C -0.005 4.005 30 H 0.065 0.935 31 H 0.047 0.953 32 H 0.112 0.888 33 H 0.100 0.900 34 H 0.060 0.940 35 H 0.102 0.898 36 H 0.097 0.903 37 H 0.238 0.762 38 H 0.177 0.823 39 H 0.183 0.817 40 H 0.153 0.847 41 H 0.145 0.855 42 H 0.147 0.853 43 H 0.183 0.817 44 H 0.083 0.917 45 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 6.861 -24.273 -8.230 26.532 hybrid contribution 0.473 1.010 0.360 1.172 sum 7.334 -23.263 -7.869 25.629 Atomic orbital electron populations 1.70032 1.05268 1.25719 1.53631 1.25068 0.95380 0.98511 1.00685 0.86226 0.79063 0.83341 0.77740 1.21352 1.21648 1.20355 1.19201 0.92478 0.84258 1.42600 0.91315 1.44044 1.33466 1.01149 1.53085 1.21446 0.89168 0.98142 0.89901 1.23333 0.99106 0.85009 0.96398 1.87792 1.41143 1.33138 1.68852 1.22734 0.87650 0.93769 0.95458 0.92293 1.21486 1.01957 0.87529 0.88314 1.45882 1.70486 1.08609 1.11170 1.17782 0.77074 0.81863 0.88066 1.90631 1.52430 1.75647 1.22906 1.21929 1.06840 0.94008 0.94845 1.22813 0.93029 0.99435 0.86893 1.67126 1.12710 1.05219 1.35277 1.23315 0.89981 0.90751 0.95655 1.19022 1.03944 0.95291 0.94186 1.20955 0.98799 0.93139 0.98091 1.21004 0.99788 1.00347 0.92577 1.21204 0.97403 0.93946 0.99212 1.21837 0.97192 0.95721 0.97982 1.18919 0.95538 0.91063 0.93796 1.21348 0.99020 0.87209 0.92951 0.93457 0.95311 0.88763 0.89974 0.94043 0.89765 0.90281 0.76174 0.82336 0.81654 0.84747 0.85493 0.85321 0.81664 0.91727 0.95200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.71 11.15 55.49 0.62 -25.09 16 2 C 0.00 0.07 4.95 -17.43 -0.09 -0.02 16 3 Si 0.91 21.24 29.58 -169.99 -5.03 16.21 16 4 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 7 C -0.26 -6.86 9.65 -15.06 -0.15 -7.01 16 8 H 0.07 1.80 7.88 -52.48 -0.41 1.38 16 9 N -0.59 -14.58 3.05 -172.09 -0.53 -15.11 16 10 C 0.14 3.25 5.44 -3.54 -0.02 3.23 16 11 C 0.04 0.73 6.98 37.31 0.26 0.99 16 12 O -0.39 -7.07 10.33 -35.23 -0.36 -7.44 16 13 C 0.06 1.07 2.80 -26.80 -0.07 1.00 16 14 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 15 C 0.13 1.89 5.35 -4.04 -0.02 1.87 16 16 N -0.71 -9.18 5.46 -61.38 -0.34 -9.51 16 17 C 0.57 7.80 7.77 -12.51 -0.10 7.71 16 18 O -0.54 -8.65 13.74 5.28 0.07 -8.57 16 19 C -0.17 -2.09 6.07 -102.66 -0.62 -2.72 16 20 C 0.12 1.34 10.71 -17.13 -0.18 1.15 16 21 N -0.50 -5.34 10.22 -12.58 -0.13 -5.47 16 22 C 0.17 1.51 11.00 -17.01 -0.19 1.32 16 23 C -0.12 -1.15 5.74 -106.89 -0.61 -1.77 16 24 C -0.09 -0.63 9.82 -39.49 -0.39 -1.02 16 25 C -0.12 -0.83 9.94 -39.91 -0.40 -1.22 16 26 C -0.10 -0.84 9.96 -39.84 -0.40 -1.24 16 27 C -0.11 -1.25 9.33 -39.69 -0.37 -1.62 16 28 C 0.01 0.14 5.91 -104.75 -0.62 -0.47 16 29 C 0.12 2.48 6.00 -3.75 -0.02 2.45 16 30 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 31 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.09 2.42 6.16 -51.93 -0.32 2.10 16 33 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 34 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 36 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 37 H 0.40 4.51 6.58 -40.82 -0.27 4.24 16 38 H 0.16 1.42 6.44 -52.49 -0.34 1.08 16 39 H 0.17 0.81 8.06 -52.49 -0.42 0.39 16 40 H 0.13 0.51 8.06 -52.49 -0.42 0.09 16 41 H 0.13 0.54 8.06 -52.49 -0.42 0.12 16 42 H 0.13 0.82 8.06 -52.48 -0.42 0.40 16 43 H 0.17 2.13 5.24 -52.49 -0.28 1.86 16 44 H 0.06 1.24 7.96 -51.93 -0.41 0.83 16 45 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 370.04 15.07 5.58 5.58 Total: -1.00 -32.55 370.04 -9.91 -42.46 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: -5.81 Total: 4.29 kcal Atomic # 6 Polarization: 6.64 SS G_CDS: -3.98 Total: 2.65 kcal Atomic # 7 Polarization: -54.81 SS G_CDS: -0.37 Total: -55.18 kcal Atomic # 8 Polarization: -15.72 SS G_CDS: -0.29 Total: -16.01 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.03 Total: 16.21 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -32.55 -9.91 -42.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035613458.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.718 kcal (2) G-P(sol) polarization free energy of solvation -32.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.462 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds