Wall clock time and date at job start Tue Mar 31 2020 23:58:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86793 * 119.99612 * 2 1 4 4 H 1.48501 * 109.47251 * 269.72669 * 3 2 1 5 5 H 1.48504 * 109.47315 * 29.72459 * 3 2 1 6 6 H 1.48503 * 109.47374 * 149.72700 * 3 2 1 7 7 C 1.38811 * 119.99894 * 179.72590 * 2 1 3 8 8 H 1.08004 * 119.99269 * 196.40364 * 7 2 1 9 9 N 1.36938 * 120.00369 * 16.40694 * 7 2 1 10 10 C 1.47152 * 120.98223 * 26.74442 * 9 7 2 11 11 C 1.53291 * 108.38463 * 129.44250 * 10 9 7 12 12 O 1.42958 * 109.22268 * 52.30270 * 11 10 9 13 13 C 1.42965 * 114.16766 * 297.42018 * 12 11 10 14 14 H 1.08997 * 109.51063 * 302.65417 * 13 12 11 15 15 C 1.52994 * 109.51183 * 182.55476 * 13 12 11 16 16 N 1.46501 * 109.47195 * 65.00078 * 15 13 12 17 17 C 1.34783 * 119.99965 * 179.97438 * 16 15 13 18 18 O 1.21595 * 119.99913 * 0.02562 * 17 16 15 19 19 C 1.47441 * 119.99899 * 179.97438 * 17 16 15 20 20 C 1.38954 * 121.16924 * 359.72346 * 19 17 16 21 21 N 1.32204 * 121.31250 * 179.70118 * 20 19 17 22 22 C 1.31196 * 123.69849 * 0.60712 * 21 20 19 23 23 C 1.40393 * 120.91426 * 359.68848 * 22 21 20 24 24 C 1.40394 * 122.14314 * 180.02562 * 23 22 21 25 25 C 1.36233 * 119.48435 * 179.97438 * 24 23 22 26 26 C 1.39293 * 121.10353 * 0.02562 * 25 24 23 27 27 C 1.36437 * 120.95157 * 359.97438 * 26 25 24 28 28 C 1.39699 * 119.43370 * 359.97438 * 27 26 25 29 29 C 1.47146 * 120.98166 * 206.46273 * 9 7 2 30 30 H 0.97001 * 120.00132 * 0.27220 * 1 2 3 31 31 H 1.08995 * 109.68009 * 249.17277 * 10 9 7 32 32 H 1.08998 * 109.67837 * 9.67797 * 10 9 7 33 33 H 1.09002 * 109.50962 * 172.22809 * 11 10 9 34 34 H 1.08996 * 109.51452 * 292.32644 * 11 10 9 35 35 H 1.09002 * 109.47062 * 184.99823 * 15 13 12 36 36 H 1.08995 * 109.47304 * 304.99761 * 15 13 12 37 37 H 0.97002 * 120.00114 * 359.97438 * 16 15 13 38 38 H 1.07997 * 119.34550 * 359.97196 * 20 19 17 39 39 H 1.08002 * 119.54284 * 179.67566 * 22 21 20 40 40 H 1.07994 * 120.26195 * 359.93911 * 24 23 22 41 41 H 1.07997 * 119.44692 * 180.02562 * 25 24 23 42 42 H 1.08004 * 119.52556 * 179.97438 * 26 25 24 43 43 H 1.07997 * 120.28941 * 180.02562 * 27 26 25 44 44 H 1.09004 * 109.67983 * 350.28057 * 29 9 7 45 45 H 1.09002 * 109.68257 * 110.83074 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.5034 2.0431 -1.4001 5 1 1.4446 2.6544 0.6942 6 1 3.5448 1.4420 0.7058 7 6 2.0103 -1.2021 0.0058 8 1 3.0573 -1.2198 0.2700 9 7 1.3675 -2.3655 -0.3236 10 6 0.1949 -2.3576 -1.2127 11 6 0.4201 -3.3942 -2.3192 12 8 0.7584 -4.6501 -1.7259 13 6 1.9747 -4.6339 -0.9748 14 1 2.7944 -4.3101 -1.6162 15 6 2.2659 -6.0387 -0.4434 16 7 2.5173 -6.9437 -1.5676 17 6 2.7983 -8.2418 -1.3381 18 8 2.8427 -8.6617 -0.1978 19 6 3.0508 -9.1527 -2.4696 20 6 2.9996 -8.7002 -3.7824 21 7 3.2312 -9.5132 -4.7989 22 6 3.5108 -10.7877 -4.6625 23 6 3.5885 -11.3770 -3.3906 24 6 3.8862 -12.7377 -3.2148 25 6 3.9484 -13.2532 -1.9553 26 6 3.7209 -12.4528 -0.8382 27 6 3.4292 -11.1268 -0.9727 28 6 3.3586 -10.5655 -2.2500 29 6 1.8325 -3.6612 0.1961 30 1 -0.4850 0.8400 -0.0040 31 1 -0.6985 -2.6155 -0.6442 32 1 0.0759 -1.3682 -1.6544 33 1 -0.4913 -3.5030 -2.9071 34 1 1.2335 -3.0655 -2.9661 35 1 3.1439 -6.0083 0.2019 36 1 1.4085 -6.3966 0.1265 37 1 2.4816 -6.6087 -2.4773 38 1 2.7704 -7.6628 -3.9761 39 1 3.6834 -11.3920 -5.5409 40 1 4.0641 -13.3710 -4.0713 41 1 4.1779 -14.2999 -1.8207 42 1 3.7762 -12.8882 0.1487 43 1 3.2551 -10.5161 -0.0992 44 1 2.7979 -3.5350 0.6863 45 1 1.1068 -4.0528 0.9089 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035613458.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:58:56 Heat of formation + Delta-G solvation = -15.361773 kcal Electronic energy + Delta-G solvation = -28569.384569 eV Core-core repulsion = 24551.806088 eV Total energy + Delta-G solvation = -4017.578481 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.93875 -40.62339 -39.86602 -38.35078 -36.55743 -35.87013 -33.92634 -33.36260 -32.44485 -32.16395 -30.71299 -29.20622 -27.38382 -25.74703 -24.96608 -24.51381 -23.89782 -23.09073 -22.04091 -21.28174 -19.09512 -18.95690 -18.59330 -18.41769 -17.56827 -17.18805 -16.87070 -16.72670 -16.28634 -16.09830 -15.95426 -15.64570 -15.50230 -15.07516 -15.04725 -14.88449 -14.66845 -14.55770 -14.15578 -13.73517 -13.70903 -13.23535 -13.17069 -13.01703 -12.91128 -12.71298 -12.55403 -12.41915 -12.17391 -12.08898 -11.89313 -11.36860 -11.11763 -11.10037 -10.81873 -10.58022 -10.42080 -10.26637 -10.08348 -9.14041 -8.77427 -7.92719 -5.40878 -0.97933 -0.13208 0.65982 1.46381 1.47082 1.56350 1.71837 1.94779 2.18544 2.46617 2.74218 3.05746 3.22138 3.22460 3.44860 3.50274 3.63095 3.70419 3.87583 3.92757 3.98620 4.04459 4.23501 4.27988 4.32741 4.45135 4.49241 4.50364 4.58222 4.62279 4.69969 4.74532 4.77455 4.87794 5.02312 5.03950 5.09729 5.22326 5.30406 5.41122 5.51191 5.54041 5.57396 5.59761 5.90846 6.23331 6.30676 6.37814 6.81590 7.04491 7.05946 7.72286 8.25948 9.13404 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.026311 B = 0.002072 C = 0.002003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.958138 B =13510.157761 C =13973.023864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.051 4.051 3 Si 0.973 3.027 4 H -0.282 1.282 5 H -0.296 1.296 6 H -0.268 1.268 7 C -0.266 4.266 8 H 0.073 0.927 9 N -0.613 5.613 10 C 0.143 3.857 11 C 0.054 3.946 12 O -0.390 6.390 13 C 0.078 3.922 14 H 0.071 0.929 15 C 0.142 3.858 16 N -0.705 5.705 17 C 0.565 3.435 18 O -0.568 6.568 19 C -0.202 4.202 20 C 0.130 3.870 21 N -0.521 5.521 22 C 0.191 3.809 23 C -0.139 4.139 24 C -0.074 4.074 25 C -0.124 4.124 26 C -0.088 4.088 27 C -0.149 4.149 28 C -0.008 4.008 29 C 0.117 3.883 30 H 0.252 0.748 31 H -0.001 1.001 32 H 0.068 0.932 33 H 0.109 0.891 34 H 0.052 0.948 35 H 0.093 0.907 36 H 0.066 0.934 37 H 0.412 0.588 38 H 0.172 0.828 39 H 0.209 0.791 40 H 0.177 0.823 41 H 0.162 0.838 42 H 0.146 0.854 43 H 0.139 0.861 44 H 0.073 0.927 45 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.883 -27.236 -10.621 30.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.247 4.247 3 Si 0.800 3.200 4 H -0.208 1.208 5 H -0.223 1.223 6 H -0.193 1.193 7 C -0.395 4.395 8 H 0.091 0.909 9 N -0.337 5.337 10 C 0.017 3.983 11 C -0.024 4.024 12 O -0.309 6.309 13 C 0.019 3.981 14 H 0.089 0.911 15 C 0.018 3.982 16 N -0.356 5.356 17 C 0.354 3.646 18 O -0.450 6.450 19 C -0.208 4.208 20 C -0.014 4.014 21 N -0.229 5.229 22 C 0.020 3.980 23 C -0.141 4.141 24 C -0.093 4.093 25 C -0.142 4.142 26 C -0.107 4.107 27 C -0.167 4.167 28 C -0.014 4.014 29 C -0.009 4.009 30 H 0.061 0.939 31 H 0.017 0.983 32 H 0.086 0.914 33 H 0.127 0.873 34 H 0.071 0.929 35 H 0.111 0.889 36 H 0.084 0.916 37 H 0.249 0.751 38 H 0.188 0.812 39 H 0.225 0.775 40 H 0.194 0.806 41 H 0.180 0.820 42 H 0.163 0.837 43 H 0.156 0.844 44 H 0.092 0.908 45 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 8.621 -26.999 -10.568 30.248 hybrid contribution -0.044 1.664 1.102 1.997 sum 8.577 -25.335 -9.466 28.373 Atomic orbital electron populations 1.70192 1.06728 1.26083 1.55173 1.25857 0.96136 1.01676 1.00997 0.85190 0.77971 0.79079 0.77718 1.20841 1.22297 1.19259 1.19555 0.92865 0.85325 1.41791 0.90913 1.44323 1.33545 1.02054 1.53806 1.21314 0.87958 0.98309 0.90720 1.23165 1.00833 0.83686 0.94711 1.87810 1.41783 1.32544 1.68796 1.22576 0.87511 0.94075 0.93959 0.91123 1.21242 1.01814 0.86442 0.88699 1.45737 1.70425 1.08305 1.11143 1.18096 0.76266 0.81982 0.88279 1.90622 1.53876 1.76194 1.24276 1.21794 1.10000 0.94376 0.94598 1.23010 0.91734 1.00157 0.86465 1.67239 1.14443 1.06292 1.34925 1.24046 0.86858 0.90314 0.96741 1.19321 1.04651 0.96425 0.93699 1.21467 0.96040 0.92188 0.99608 1.21405 0.99126 1.01778 0.91903 1.21520 0.95194 0.92949 1.01057 1.21691 1.00671 0.97027 0.97331 1.19177 0.96048 0.91291 0.94846 1.21506 0.98877 0.86291 0.94267 0.93932 0.98330 0.91412 0.87340 0.92921 0.88928 0.91602 0.75077 0.81156 0.77453 0.80573 0.82015 0.83665 0.84356 0.90832 0.96417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.95 11.15 21.65 0.24 -54.70 16 2 C -0.05 -2.82 4.95 84.86 0.42 -2.40 16 3 Si 0.97 44.15 29.58 68.60 2.03 46.18 16 4 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 5 H -0.30 -13.63 7.11 99.48 0.71 -12.93 16 6 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 7 C -0.27 -14.38 9.65 84.03 0.81 -13.57 16 8 H 0.07 3.80 7.88 -2.91 -0.02 3.77 16 9 N -0.61 -30.63 3.05 -698.37 -2.13 -32.76 16 10 C 0.14 6.85 5.44 86.35 0.47 7.32 16 11 C 0.05 1.96 6.98 72.08 0.50 2.47 16 12 O -0.39 -13.84 10.33 -148.98 -1.54 -15.38 16 13 C 0.08 2.59 2.80 30.55 0.09 2.68 16 14 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 15 C 0.14 4.13 5.35 86.38 0.46 4.59 16 16 N -0.70 -18.23 5.46 -466.37 -2.55 -20.77 16 17 C 0.57 16.18 7.77 86.67 0.67 16.85 16 18 O -0.57 -19.44 13.74 -4.02 -0.06 -19.50 16 19 C -0.20 -5.03 6.07 -18.60 -0.11 -5.15 16 20 C 0.13 2.75 10.71 84.81 0.91 3.66 16 21 N -0.52 -10.21 10.22 -193.71 -1.98 -12.19 16 22 C 0.19 2.71 11.00 85.31 0.94 3.65 16 23 C -0.14 -2.29 5.74 -21.33 -0.12 -2.41 16 24 C -0.07 -0.72 9.82 22.33 0.22 -0.51 16 25 C -0.12 -1.29 9.94 22.06 0.22 -1.07 16 26 C -0.09 -1.39 9.96 22.10 0.22 -1.17 16 27 C -0.15 -3.50 9.33 22.20 0.21 -3.29 16 28 C -0.01 -0.20 5.91 -19.94 -0.12 -0.32 16 29 C 0.12 4.80 6.00 86.21 0.52 5.32 16 30 H 0.25 14.28 8.31 -92.71 -0.77 13.51 16 31 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 32 H 0.07 3.60 6.16 -2.39 -0.01 3.59 16 33 H 0.11 3.41 8.14 -2.39 -0.02 3.39 16 34 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16 36 H 0.07 2.10 8.14 -2.39 -0.02 2.09 16 37 H 0.41 8.95 6.58 -92.71 -0.61 8.34 16 38 H 0.17 2.90 6.44 -2.91 -0.02 2.89 16 39 H 0.21 0.98 8.06 -2.91 -0.02 0.96 16 40 H 0.18 0.23 8.06 -2.91 -0.02 0.21 16 41 H 0.16 0.56 8.06 -2.91 -0.02 0.54 16 42 H 0.15 1.66 8.06 -2.91 -0.02 1.64 16 43 H 0.14 3.94 5.24 -2.91 -0.02 3.92 16 44 H 0.07 2.84 7.96 -2.38 -0.02 2.82 16 45 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 Total: -1.00 -73.94 370.04 0.74 -73.20 By element: Atomic # 1 Polarization: 18.87 SS G_CDS: 0.42 Total: 19.29 kcal Atomic # 6 Polarization: 10.34 SS G_CDS: 6.30 Total: 16.64 kcal Atomic # 7 Polarization: -114.01 SS G_CDS: -6.42 Total: -120.43 kcal Atomic # 8 Polarization: -33.28 SS G_CDS: -1.59 Total: -34.88 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.18 kcal Total: -73.94 0.74 -73.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035613458.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.839 kcal (2) G-P(sol) polarization free energy of solvation -73.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds