Wall clock time and date at job start Tue Mar 31 2020 23:40:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86805 * 119.99898 * 2 1 4 4 H 1.48501 * 109.47328 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47217 * 300.00021 * 3 2 1 6 6 H 1.48504 * 109.47009 * 60.00262 * 3 2 1 7 7 C 1.38814 * 120.00332 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99958 * 180.02562 * 7 2 1 9 9 N 1.36941 * 119.99675 * 359.97438 * 7 2 1 10 10 C 1.48251 * 126.39440 * 359.97438 * 9 7 2 11 11 C 1.55286 * 106.99369 * 184.93559 * 10 9 7 12 12 C 1.53742 * 101.87397 * 22.49319 * 11 10 9 13 13 H 1.08997 * 111.30928 * 79.82301 * 12 11 10 14 14 C 1.52246 * 114.74633 * 207.22069 * 12 11 10 15 15 N 1.47716 * 106.36740 * 169.57490 * 14 12 11 16 16 C 1.34780 * 119.68207 * 127.94193 * 15 14 12 17 17 O 1.21635 * 119.99627 * 353.32597 * 16 15 14 18 18 C 1.47163 * 119.99951 * 173.32630 * 16 15 14 19 19 C 1.35748 * 125.12881 * 172.42154 * 18 16 15 20 20 C 1.46423 * 106.13813 * 179.86480 * 19 18 16 21 21 N 1.32947 * 133.88624 * 180.10804 * 20 19 18 22 22 C 1.31438 * 121.38149 * 180.32268 * 21 20 19 23 23 C 1.38867 * 121.18351 * 359.97438 * 22 21 20 24 24 C 1.38213 * 119.71014 * 0.02562 * 23 22 21 25 25 C 1.39299 * 118.33679 * 0.02562 * 24 23 22 26 26 O 1.34583 * 133.42457 * 179.97438 * 25 24 23 27 27 C 1.46597 * 120.63299 * 307.96129 * 15 14 12 28 28 C 1.53956 * 110.57402 * 47.80651 * 27 15 14 29 29 C 1.45461 * 126.40115 * 180.02562 * 9 7 2 30 30 H 1.08999 * 108.77758 * 265.95547 * 29 9 7 31 31 H 0.97002 * 120.00239 * 359.97438 * 1 2 3 32 32 H 1.09000 * 109.94975 * 65.60139 * 10 9 7 33 33 H 1.08999 * 109.93749 * 304.26734 * 10 9 7 34 34 H 1.08999 * 110.96150 * 264.33231 * 11 10 9 35 35 H 1.09002 * 110.95216 * 140.64262 * 11 10 9 36 36 H 1.09005 * 110.06726 * 288.79282 * 14 12 11 37 37 H 1.09004 * 110.06306 * 50.36090 * 14 12 11 38 38 H 1.08000 * 126.93582 * 359.97438 * 19 18 16 39 39 H 1.07999 * 119.40747 * 180.02562 * 22 21 20 40 40 H 1.08000 * 120.14137 * 179.97438 * 23 22 21 41 41 H 1.08000 * 120.82812 * 180.02562 * 24 23 22 42 42 H 1.08996 * 109.25473 * 168.08728 * 27 15 14 43 43 H 1.08995 * 109.25218 * 287.52565 * 27 15 14 44 44 H 1.08994 * 109.88116 * 68.40494 * 28 27 15 45 45 H 1.09002 * 109.87657 * 189.48831 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8914 2.3965 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1477 -2.5532 0.0005 11 6 -0.4339 -4.0741 0.1278 12 6 0.8690 -4.5892 0.7610 13 1 0.8865 -4.4065 1.8354 14 6 1.2014 -6.0407 0.4437 15 7 2.5833 -6.2639 0.9155 16 6 2.8503 -7.3030 1.7314 17 8 1.9405 -7.9787 2.1732 18 6 4.2425 -7.6200 2.0876 19 6 4.6226 -8.5424 3.0082 20 6 6.0866 -8.5193 3.0269 21 7 7.0101 -9.1882 3.7104 22 6 8.2923 -8.9606 3.5319 23 6 8.7339 -8.0108 2.6201 24 6 7.8139 -7.2881 1.8842 25 6 6.4592 -7.5415 2.0869 26 8 5.3330 -7.0329 1.5539 27 6 3.6669 -5.3659 0.5052 28 6 3.2478 -3.8953 0.6839 29 6 1.9079 -3.7210 -0.0005 30 1 1.9817 -4.0717 -1.0299 31 1 -0.4850 0.8400 0.0004 32 1 -0.5652 -2.1736 -0.9321 33 1 -0.5807 -2.0216 0.8479 34 1 -0.5956 -4.5238 -0.8518 35 1 -1.2849 -4.2571 0.7838 36 1 0.5149 -6.7050 0.9687 37 1 1.1408 -6.2118 -0.6311 38 1 3.9759 -9.1684 3.6050 39 1 9.0154 -9.5229 4.1040 40 1 9.7915 -7.8372 2.4872 41 1 8.1373 -6.5454 1.1699 42 1 4.5487 -5.5649 1.1143 43 1 3.9062 -5.5468 -0.5426 44 1 3.1550 -3.6626 1.7446 45 1 3.9875 -3.2406 0.2230 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036775028.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:40:09 Heat of formation + Delta-G solvation = 56.448031 kcal Electronic energy + Delta-G solvation = -29646.821784 eV Core-core repulsion = 25632.357210 eV Total energy + Delta-G solvation = -4014.464574 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.07814 -40.31993 -39.17308 -38.33300 -35.58019 -33.55834 -32.79592 -31.88224 -31.68303 -30.68100 -29.51464 -28.22809 -25.60573 -24.80331 -23.88199 -23.20558 -22.46215 -21.87200 -20.56439 -20.07444 -19.51133 -18.43987 -17.74292 -16.99195 -16.79614 -16.48223 -16.04986 -15.68196 -15.27883 -14.99165 -14.49462 -14.29525 -13.99504 -13.94694 -13.69317 -13.59244 -13.40790 -13.20149 -13.03830 -12.99477 -12.63295 -12.34029 -11.71903 -11.54425 -11.44411 -10.94195 -10.88526 -10.83792 -10.76913 -10.43998 -10.13315 -10.06653 -9.92637 -9.82812 -9.66763 -9.53910 -9.37723 -9.07300 -8.66535 -8.65117 -6.87822 -5.75376 -3.08713 0.11099 0.73718 1.43762 1.99059 2.75307 2.92191 3.35441 3.36609 3.41740 3.44518 3.60269 4.04421 4.26788 4.45098 4.45846 4.49890 4.70504 4.93734 4.97282 5.02717 5.15428 5.22442 5.28036 5.37390 5.47629 5.52432 5.54311 5.63621 5.74057 5.80760 5.82080 5.91651 5.94400 6.08628 6.11836 6.16728 6.25703 6.40208 6.49691 6.55963 6.58957 6.73706 7.00634 7.20571 7.45407 7.51622 7.57733 7.77516 7.83311 8.20202 9.15349 9.78966 10.46666 11.37222 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.015080 B = 0.002893 C = 0.002494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1856.368963 B = 9676.237768 C =11226.472477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.008 4.008 3 Si 0.909 3.091 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.226 4.226 8 H 0.079 0.921 9 N -0.595 5.595 10 C 0.177 3.823 11 C -0.135 4.135 12 C -0.125 4.125 13 H 0.081 0.919 14 C 0.126 3.874 15 N -0.591 5.591 16 C 0.593 3.407 17 O -0.517 6.517 18 C 0.002 3.998 19 C -0.108 4.108 20 C 0.065 3.935 21 N -0.441 5.441 22 C 0.101 3.899 23 C -0.145 4.145 24 C -0.059 4.059 25 C 0.008 3.992 26 O -0.166 6.166 27 C 0.099 3.901 28 C -0.128 4.128 29 C 0.167 3.833 30 H 0.022 0.978 31 H 0.252 0.748 32 H 0.039 0.961 33 H 0.055 0.945 34 H 0.059 0.941 35 H 0.062 0.938 36 H 0.094 0.906 37 H 0.075 0.925 38 H 0.178 0.822 39 H 0.167 0.833 40 H 0.151 0.849 41 H 0.148 0.852 42 H 0.099 0.901 43 H 0.070 0.930 44 H 0.068 0.932 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.188 -16.902 2.859 22.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.204 4.204 3 Si 0.740 3.260 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.354 4.354 8 H 0.097 0.903 9 N -0.320 5.320 10 C 0.053 3.947 11 C -0.174 4.174 12 C -0.146 4.146 13 H 0.100 0.900 14 C 0.005 3.995 15 N -0.322 5.322 16 C 0.378 3.622 17 O -0.395 6.395 18 C -0.049 4.049 19 C -0.129 4.129 20 C -0.064 4.064 21 N -0.150 5.150 22 C -0.065 4.065 23 C -0.165 4.165 24 C -0.085 4.085 25 C -0.042 4.042 26 O -0.068 6.068 27 C -0.023 4.023 28 C -0.167 4.167 29 C 0.059 3.941 30 H 0.039 0.961 31 H 0.062 0.938 32 H 0.057 0.943 33 H 0.073 0.927 34 H 0.078 0.922 35 H 0.081 0.919 36 H 0.112 0.888 37 H 0.094 0.906 38 H 0.195 0.805 39 H 0.184 0.816 40 H 0.169 0.831 41 H 0.166 0.834 42 H 0.116 0.884 43 H 0.089 0.911 44 H 0.087 0.913 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 13.283 -17.376 3.429 22.139 hybrid contribution 0.884 1.600 -0.539 1.906 sum 14.167 -15.776 2.891 21.400 Atomic orbital electron populations 1.69943 1.04898 1.24968 1.57003 1.24795 0.95681 0.97651 1.02295 0.86083 0.78701 0.83944 0.77255 1.20533 1.21766 1.21794 1.19034 0.90368 0.82287 1.43727 0.90334 1.44243 1.01665 0.99424 1.86619 1.21557 0.83881 0.88266 1.01044 1.22719 0.95651 0.99692 0.99360 1.22650 0.98086 0.92957 1.00862 0.90020 1.21790 0.80491 0.97738 0.99525 1.48274 1.10839 1.26514 1.46539 1.16843 0.84311 0.81532 0.79471 1.90873 1.43299 1.51573 1.53718 1.22217 0.86917 0.97366 0.98416 1.22484 0.91282 0.99741 0.99400 1.20645 0.93939 0.95782 0.96070 1.67041 1.01370 1.24001 1.22604 1.22857 0.91403 0.95983 0.96285 1.22087 1.00806 0.96783 0.96797 1.20553 0.87042 1.00492 1.00420 1.20790 0.88844 0.97197 0.97402 1.84368 1.12178 1.53609 1.56611 1.22279 0.88705 0.90287 1.01028 1.21878 0.99539 0.93103 1.02157 1.20636 0.90974 0.87347 0.95163 0.96115 0.93770 0.94254 0.92672 0.92243 0.91924 0.88755 0.90632 0.80484 0.81609 0.83112 0.83379 0.88361 0.91150 0.91320 0.90258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.59 10.44 55.49 0.58 -26.01 16 2 C -0.01 -0.22 5.49 -17.43 -0.10 -0.31 16 3 Si 0.91 21.67 29.55 -169.99 -5.02 16.64 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 7 C -0.23 -6.03 9.88 -15.06 -0.15 -6.18 16 8 H 0.08 2.01 7.21 -52.49 -0.38 1.63 16 9 N -0.60 -14.49 3.35 -163.07 -0.55 -15.03 16 10 C 0.18 4.16 5.45 -1.87 -0.01 4.15 16 11 C -0.14 -2.42 6.53 -25.13 -0.16 -2.59 16 12 C -0.13 -2.15 2.85 -89.38 -0.26 -2.41 16 13 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 14 C 0.13 1.83 5.97 -3.76 -0.02 1.80 16 15 N -0.59 -8.49 3.00 -173.85 -0.52 -9.01 16 16 C 0.59 8.74 7.64 -12.64 -0.10 8.64 16 17 O -0.52 -8.70 16.20 5.25 0.08 -8.61 16 18 C 0.00 0.03 6.69 -36.85 -0.25 -0.22 16 19 C -0.11 -1.34 10.82 -37.18 -0.40 -1.75 16 20 C 0.07 0.80 7.52 -83.17 -0.63 0.17 16 21 N -0.44 -5.05 10.41 -9.87 -0.10 -5.15 16 22 C 0.10 0.78 11.17 -17.49 -0.20 0.59 16 23 C -0.14 -0.91 10.09 -39.36 -0.40 -1.30 16 24 C -0.06 -0.47 10.19 -39.20 -0.40 -0.87 16 25 C 0.01 0.09 7.42 -38.27 -0.28 -0.20 16 26 O -0.17 -2.02 7.05 3.40 0.02 -2.00 16 27 C 0.10 1.34 5.87 -3.49 -0.02 1.32 16 28 C -0.13 -2.12 5.48 -27.01 -0.15 -2.27 16 29 C 0.17 3.23 2.55 -68.02 -0.17 3.05 16 30 H 0.02 0.42 7.94 -51.93 -0.41 0.01 16 31 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 32 H 0.04 1.01 7.77 -51.93 -0.40 0.61 16 33 H 0.06 1.45 7.22 -51.93 -0.37 1.08 16 34 H 0.06 0.97 8.11 -51.93 -0.42 0.55 16 35 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 36 H 0.09 1.37 6.98 -51.93 -0.36 1.01 16 37 H 0.08 1.01 8.08 -51.93 -0.42 0.59 16 38 H 0.18 1.99 8.06 -52.49 -0.42 1.57 16 39 H 0.17 0.72 8.06 -52.49 -0.42 0.30 16 40 H 0.15 0.41 8.06 -52.49 -0.42 -0.02 16 41 H 0.15 0.83 8.06 -52.49 -0.42 0.41 16 42 H 0.10 1.24 4.28 -53.42 -0.23 1.02 16 43 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.07 1.22 8.13 -51.93 -0.42 0.80 16 45 H 0.08 1.32 7.62 -51.93 -0.40 0.93 16 LS Contribution 361.25 15.07 5.44 5.44 Total: -1.00 -32.31 361.25 -9.66 -41.97 By element: Atomic # 1 Polarization: 6.04 SS G_CDS: -5.91 Total: 0.13 kcal Atomic # 6 Polarization: 5.32 SS G_CDS: -3.68 Total: 1.63 kcal Atomic # 7 Polarization: -54.62 SS G_CDS: -0.59 Total: -55.21 kcal Atomic # 8 Polarization: -10.72 SS G_CDS: 0.11 Total: -10.61 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.31 -9.66 -41.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036775028.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.417 kcal (2) G-P(sol) polarization free energy of solvation -32.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.969 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds