Wall clock time and date at job start Tue Mar 31 2020 23:40:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86805 * 119.99898 * 2 1 4 4 H 1.48501 * 109.47328 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47217 * 300.00021 * 3 2 1 6 6 H 1.48504 * 109.47009 * 60.00262 * 3 2 1 7 7 C 1.38814 * 120.00332 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99958 * 180.02562 * 7 2 1 9 9 N 1.36941 * 119.99675 * 359.97438 * 7 2 1 10 10 C 1.48251 * 126.39440 * 359.97438 * 9 7 2 11 11 C 1.55286 * 106.99369 * 184.93559 * 10 9 7 12 12 C 1.53742 * 101.87397 * 22.49319 * 11 10 9 13 13 H 1.08997 * 111.30928 * 79.82301 * 12 11 10 14 14 C 1.52246 * 114.74633 * 207.22069 * 12 11 10 15 15 N 1.47716 * 106.36740 * 169.57490 * 14 12 11 16 16 C 1.34780 * 119.68207 * 127.94193 * 15 14 12 17 17 O 1.21635 * 119.99627 * 353.32597 * 16 15 14 18 18 C 1.47163 * 119.99951 * 173.32630 * 16 15 14 19 19 C 1.35748 * 125.12881 * 172.42154 * 18 16 15 20 20 C 1.46423 * 106.13813 * 179.86480 * 19 18 16 21 21 N 1.32947 * 133.88624 * 180.10804 * 20 19 18 22 22 C 1.31438 * 121.38149 * 180.32268 * 21 20 19 23 23 C 1.38867 * 121.18351 * 359.97438 * 22 21 20 24 24 C 1.38213 * 119.71014 * 0.02562 * 23 22 21 25 25 C 1.39299 * 118.33679 * 0.02562 * 24 23 22 26 26 O 1.34583 * 133.42457 * 179.97438 * 25 24 23 27 27 C 1.46597 * 120.63299 * 307.96129 * 15 14 12 28 28 C 1.53956 * 110.57402 * 47.80651 * 27 15 14 29 29 C 1.45461 * 126.40115 * 180.02562 * 9 7 2 30 30 H 1.08999 * 108.77758 * 265.95547 * 29 9 7 31 31 H 0.97002 * 120.00239 * 359.97438 * 1 2 3 32 32 H 1.09000 * 109.94975 * 65.60139 * 10 9 7 33 33 H 1.08999 * 109.93749 * 304.26734 * 10 9 7 34 34 H 1.08999 * 110.96150 * 264.33231 * 11 10 9 35 35 H 1.09002 * 110.95216 * 140.64262 * 11 10 9 36 36 H 1.09005 * 110.06726 * 288.79282 * 14 12 11 37 37 H 1.09004 * 110.06306 * 50.36090 * 14 12 11 38 38 H 1.08000 * 126.93582 * 359.97438 * 19 18 16 39 39 H 1.07999 * 119.40747 * 180.02562 * 22 21 20 40 40 H 1.08000 * 120.14137 * 179.97438 * 23 22 21 41 41 H 1.08000 * 120.82812 * 180.02562 * 24 23 22 42 42 H 1.08996 * 109.25473 * 168.08728 * 27 15 14 43 43 H 1.08995 * 109.25218 * 287.52565 * 27 15 14 44 44 H 1.08994 * 109.88116 * 68.40494 * 28 27 15 45 45 H 1.09002 * 109.87657 * 189.48831 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8914 2.3965 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1477 -2.5532 0.0005 11 6 -0.4339 -4.0741 0.1278 12 6 0.8690 -4.5892 0.7610 13 1 0.8865 -4.4065 1.8354 14 6 1.2014 -6.0407 0.4437 15 7 2.5833 -6.2639 0.9155 16 6 2.8503 -7.3030 1.7314 17 8 1.9405 -7.9787 2.1732 18 6 4.2425 -7.6200 2.0876 19 6 4.6226 -8.5424 3.0082 20 6 6.0866 -8.5193 3.0269 21 7 7.0101 -9.1882 3.7104 22 6 8.2923 -8.9606 3.5319 23 6 8.7339 -8.0108 2.6201 24 6 7.8139 -7.2881 1.8842 25 6 6.4592 -7.5415 2.0869 26 8 5.3330 -7.0329 1.5539 27 6 3.6669 -5.3659 0.5052 28 6 3.2478 -3.8953 0.6839 29 6 1.9079 -3.7210 -0.0005 30 1 1.9817 -4.0717 -1.0299 31 1 -0.4850 0.8400 0.0004 32 1 -0.5652 -2.1736 -0.9321 33 1 -0.5807 -2.0216 0.8479 34 1 -0.5956 -4.5238 -0.8518 35 1 -1.2849 -4.2571 0.7838 36 1 0.5149 -6.7050 0.9687 37 1 1.1408 -6.2118 -0.6311 38 1 3.9759 -9.1684 3.6050 39 1 9.0154 -9.5229 4.1040 40 1 9.7915 -7.8372 2.4872 41 1 8.1373 -6.5454 1.1699 42 1 4.5487 -5.5649 1.1143 43 1 3.9062 -5.5468 -0.5426 44 1 3.1550 -3.6626 1.7446 45 1 3.9875 -3.2406 0.2230 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036775028.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:40:08 Heat of formation + Delta-G solvation = 36.411241 kcal Electronic energy + Delta-G solvation = -29647.690645 eV Core-core repulsion = 25632.357210 eV Total energy + Delta-G solvation = -4015.333435 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.90508 -41.51662 -40.03214 -39.63140 -36.99890 -34.58630 -34.29949 -33.13044 -32.64847 -31.86571 -30.88054 -29.69136 -26.90056 -26.30389 -24.86111 -24.20164 -23.81342 -22.76946 -21.93184 -21.56169 -20.84692 -19.43345 -18.71769 -18.28842 -17.87154 -17.43270 -17.20836 -16.97734 -16.55351 -16.32912 -15.98298 -15.65879 -15.27145 -14.89529 -14.80207 -14.67248 -14.44471 -14.28472 -14.11277 -14.05597 -13.81307 -13.58804 -13.33429 -13.11886 -13.07296 -12.73276 -12.46210 -12.14202 -11.97547 -11.83835 -11.66992 -11.61641 -11.58126 -11.40486 -11.01343 -10.71802 -10.52597 -10.17266 -9.99852 -9.67882 -8.87329 -7.83349 -5.17647 -0.68793 0.06850 0.61073 1.09885 1.46141 1.46711 1.56549 1.70338 1.87762 2.50410 2.67848 2.76165 3.30184 3.35738 3.39101 3.49272 3.71294 3.77203 3.84645 3.93487 3.97715 4.10954 4.17607 4.23635 4.26440 4.38692 4.46100 4.51185 4.62630 4.66026 4.68283 4.77049 4.82121 4.89748 4.94953 5.01220 5.06061 5.07968 5.15807 5.28206 5.37913 5.50994 5.52346 5.66516 5.73404 5.77298 6.07883 6.20958 6.70562 6.78954 7.09651 7.79696 8.48159 9.28744 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.015080 B = 0.002893 C = 0.002494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1856.368963 B = 9676.237768 C =11226.472477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.071 4.071 3 Si 0.973 3.027 4 H -0.262 1.262 5 H -0.295 1.295 6 H -0.297 1.297 7 C -0.228 4.228 8 H 0.088 0.912 9 N -0.616 5.616 10 C 0.181 3.819 11 C -0.120 4.120 12 C -0.111 4.111 13 H 0.062 0.938 14 C 0.134 3.866 15 N -0.593 5.593 16 C 0.596 3.404 17 O -0.544 6.544 18 C -0.015 4.015 19 C -0.108 4.108 20 C 0.035 3.965 21 N -0.474 5.474 22 C 0.100 3.900 23 C -0.123 4.123 24 C -0.063 4.063 25 C -0.007 4.007 26 O -0.169 6.169 27 C 0.110 3.890 28 C -0.120 4.120 29 C 0.157 3.843 30 H 0.029 0.971 31 H 0.244 0.756 32 H 0.006 0.994 33 H 0.016 0.984 34 H 0.082 0.918 35 H 0.078 0.922 36 H 0.098 0.902 37 H 0.096 0.904 38 H 0.179 0.821 39 H 0.201 0.799 40 H 0.197 0.803 41 H 0.176 0.824 42 H 0.112 0.888 43 H 0.090 0.910 44 H 0.051 0.949 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.856 -18.427 2.530 25.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.264 4.264 3 Si 0.802 3.198 4 H -0.186 1.186 5 H -0.222 1.222 6 H -0.225 1.225 7 C -0.357 4.357 8 H 0.106 0.894 9 N -0.341 5.341 10 C 0.056 3.944 11 C -0.158 4.158 12 C -0.132 4.132 13 H 0.081 0.919 14 C 0.012 3.988 15 N -0.323 5.323 16 C 0.383 3.617 17 O -0.423 6.423 18 C -0.066 4.066 19 C -0.129 4.129 20 C -0.093 4.093 21 N -0.184 5.184 22 C -0.066 4.066 23 C -0.142 4.142 24 C -0.090 4.090 25 C -0.057 4.057 26 O -0.070 6.070 27 C -0.012 4.012 28 C -0.159 4.159 29 C 0.050 3.950 30 H 0.046 0.954 31 H 0.054 0.946 32 H 0.024 0.976 33 H 0.034 0.966 34 H 0.101 0.899 35 H 0.097 0.903 36 H 0.116 0.884 37 H 0.114 0.886 38 H 0.196 0.804 39 H 0.218 0.782 40 H 0.214 0.786 41 H 0.193 0.807 42 H 0.129 0.871 43 H 0.108 0.892 44 H 0.070 0.930 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 16.981 -18.932 3.092 25.619 hybrid contribution -0.053 1.990 -0.376 2.026 sum 16.928 -16.942 2.717 24.103 Atomic orbital electron populations 1.70167 1.06358 1.24996 1.58884 1.25621 0.96523 1.00970 1.03240 0.85074 0.78459 0.79821 0.76423 1.18575 1.22207 1.22459 1.19448 0.91046 0.83369 1.41792 0.89431 1.44533 1.02278 1.00813 1.86439 1.21332 0.83662 0.91739 0.97659 1.22583 0.96680 0.95392 1.01186 1.22477 0.96806 0.94555 0.99324 0.91909 1.21712 0.80877 0.95356 1.00809 1.48290 1.10870 1.26643 1.46540 1.16948 0.84796 0.81137 0.78778 1.90849 1.44394 1.52469 1.54638 1.21785 0.86594 0.98572 0.99658 1.22646 0.92237 0.99184 0.98860 1.20687 0.93840 0.97252 0.97558 1.67049 1.02797 1.25010 1.23578 1.23620 0.90680 0.96026 0.96263 1.22640 1.02685 0.94481 0.94407 1.21084 0.85678 1.01161 1.01049 1.21226 0.89614 0.97335 0.97514 1.84254 1.12264 1.53748 1.56749 1.22232 0.88676 0.87745 1.02500 1.21779 0.98011 0.95524 1.00606 1.20876 0.92895 0.85209 0.95981 0.95396 0.94631 0.97552 0.96603 0.89915 0.90292 0.88414 0.88560 0.80397 0.78231 0.78574 0.80707 0.87128 0.89186 0.93025 0.90232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.55 10.44 21.65 0.23 -57.33 16 2 C -0.07 -4.01 5.49 84.86 0.47 -3.54 16 3 Si 0.97 45.34 29.55 68.60 2.03 47.37 16 4 H -0.26 -11.24 7.11 99.48 0.71 -10.54 16 5 H -0.29 -13.81 7.11 99.48 0.71 -13.11 16 6 H -0.30 -14.02 7.11 99.48 0.71 -13.32 16 7 C -0.23 -12.31 9.88 84.03 0.83 -11.48 16 8 H 0.09 4.46 7.21 -2.91 -0.02 4.43 16 9 N -0.62 -30.59 3.35 -669.83 -2.25 -32.83 16 10 C 0.18 8.84 5.45 86.83 0.47 9.32 16 11 C -0.12 -4.24 6.53 31.63 0.21 -4.03 16 12 C -0.11 -3.76 2.85 -9.99 -0.03 -3.79 16 13 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 14 C 0.13 3.66 5.97 85.90 0.51 4.18 16 15 N -0.59 -16.25 3.00 -822.18 -2.47 -18.72 16 16 C 0.60 17.25 7.64 86.59 0.66 17.91 16 17 O -0.54 -18.25 16.20 -4.14 -0.07 -18.32 16 18 C -0.01 -0.38 6.69 24.04 0.16 -0.22 16 19 C -0.11 -2.71 10.82 23.83 0.26 -2.45 16 20 C 0.03 0.82 7.52 41.70 0.31 1.14 16 21 N -0.47 -10.12 10.41 -185.13 -1.93 -12.05 16 22 C 0.10 1.20 11.17 84.90 0.95 2.15 16 23 C -0.12 -0.96 10.09 22.41 0.23 -0.74 16 24 C -0.06 -0.79 10.19 22.52 0.23 -0.56 16 25 C -0.01 -0.15 7.42 23.12 0.17 0.02 16 26 O -0.17 -3.88 7.05 -10.76 -0.08 -3.95 16 27 C 0.11 2.77 5.87 86.68 0.51 3.28 16 28 C -0.12 -3.88 5.48 30.42 0.17 -3.72 16 29 C 0.16 5.99 2.55 45.49 0.12 6.10 16 30 H 0.03 1.07 7.94 -2.39 -0.02 1.05 16 31 H 0.24 14.40 8.31 -92.71 -0.77 13.63 16 32 H 0.01 0.34 7.77 -2.39 -0.02 0.32 16 33 H 0.02 0.88 7.22 -2.39 -0.02 0.86 16 34 H 0.08 2.57 8.11 -2.39 -0.02 2.55 16 35 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 36 H 0.10 2.69 6.98 -2.38 -0.02 2.67 16 37 H 0.10 2.29 8.08 -2.38 -0.02 2.27 16 38 H 0.18 4.17 8.06 -2.91 -0.02 4.15 16 39 H 0.20 0.85 8.06 -2.91 -0.02 0.82 16 40 H 0.20 -0.24 8.06 -2.91 -0.02 -0.27 16 41 H 0.18 1.17 8.06 -2.91 -0.02 1.15 16 42 H 0.11 2.60 4.28 -26.04 -0.11 2.49 16 43 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 44 H 0.05 1.83 8.13 -2.39 -0.02 1.81 16 45 H 0.08 2.56 7.62 -2.39 -0.02 2.54 16 Total: -1.00 -74.53 361.25 2.61 -71.92 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: 0.92 Total: 10.34 kcal Atomic # 6 Polarization: 7.34 SS G_CDS: 6.22 Total: 13.56 kcal Atomic # 7 Polarization: -114.51 SS G_CDS: -6.41 Total: -120.93 kcal Atomic # 8 Polarization: -22.12 SS G_CDS: -0.14 Total: -22.27 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.37 kcal Total: -74.53 2.61 -71.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036775028.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.334 kcal (2) G-P(sol) polarization free energy of solvation -74.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.922 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds