Wall clock time and date at job start Tue Mar 31 2020 23:43:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86799 * 119.99851 * 2 1 4 4 H 1.48503 * 109.46948 * 269.99822 * 3 2 1 5 5 H 1.48506 * 109.47164 * 29.99664 * 3 2 1 6 6 H 1.48501 * 109.47267 * 149.99703 * 3 2 1 7 7 C 1.38809 * 119.99736 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99640 * 169.22278 * 7 2 1 9 9 N 1.36930 * 120.00478 * 349.21658 * 7 2 1 10 10 C 1.47169 * 120.99319 * 328.40636 * 9 7 2 11 11 C 1.53297 * 108.41238 * 230.54472 * 10 9 7 12 12 O 1.42966 * 109.22064 * 307.71284 * 11 10 9 13 13 C 1.42967 * 114.16368 * 62.58470 * 12 11 10 14 14 C 1.47151 * 120.98412 * 148.47844 * 9 7 2 15 15 H 1.09001 * 109.68316 * 249.20056 * 14 9 7 16 16 C 1.53004 * 109.68170 * 9.71223 * 14 9 7 17 17 N 1.46508 * 109.47196 * 298.63569 * 16 14 9 18 18 C 1.34771 * 119.99791 * 179.97438 * 17 16 14 19 19 O 1.21545 * 120.00235 * 359.97438 * 18 17 16 20 20 C 1.47887 * 119.99803 * 179.97438 * 18 17 16 21 21 C 1.40601 * 119.73137 * 359.97438 * 20 18 17 22 22 C 1.35848 * 120.95474 * 180.02562 * 21 20 18 23 23 C 1.40499 * 119.88033 * 0.02562 * 22 21 20 24 24 C 1.40479 * 121.84739 * 180.02562 * 23 22 21 25 25 N 1.31218 * 119.94094 * 179.97438 * 24 23 22 26 26 C 1.32549 * 122.80696 * 359.97438 * 25 24 23 27 27 C 1.36222 * 121.84201 * 0.02562 * 26 25 24 28 28 C 1.40760 * 118.67836 * 0.02562 * 27 26 25 29 29 C 1.38528 * 119.73199 * 179.97438 * 20 18 17 30 30 H 0.97002 * 120.00358 * 0.02562 * 1 2 3 31 31 H 1.08989 * 109.65326 * 110.81692 * 10 9 7 32 32 H 1.09000 * 109.67774 * 350.28113 * 10 9 7 33 33 H 1.09001 * 109.51136 * 187.79445 * 11 10 9 34 34 H 1.08996 * 109.51410 * 67.64038 * 11 10 9 35 35 H 1.09002 * 109.51129 * 177.49505 * 13 12 11 36 36 H 1.09000 * 109.55590 * 57.36750 * 13 12 11 37 37 H 1.08995 * 109.47319 * 178.63438 * 16 14 9 38 38 H 1.09002 * 109.46535 * 58.62931 * 16 14 9 39 39 H 0.96996 * 119.99754 * 359.97438 * 17 16 14 40 40 H 1.08002 * 119.51873 * 359.72456 * 21 20 18 41 41 H 1.08003 * 120.05963 * 179.97438 * 22 21 20 42 42 H 1.08000 * 120.03057 * 359.92831 * 24 23 22 43 43 H 1.07999 * 119.08003 * 180.02562 * 26 25 24 44 44 H 1.08005 * 120.66133 * 180.02562 * 27 26 25 45 45 H 1.08002 * 120.36592 * 0.02562 * 29 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4403 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0760 -1.2105 -0.1744 9 7 1.3438 -2.3775 0.2229 10 6 0.1596 -2.4238 1.0955 11 6 0.3520 -3.5539 2.1133 12 8 0.6774 -4.7612 1.4201 13 6 1.9042 -4.7034 0.6883 14 6 1.7913 -3.6321 -0.4023 15 1 1.0664 -3.9473 -1.1528 16 6 3.1562 -3.4214 -1.0609 17 7 3.0414 -2.4027 -2.1075 18 6 4.1253 -2.0503 -2.8266 19 8 5.1983 -2.5773 -2.6066 20 6 4.0093 -1.0224 -3.8835 21 6 2.7653 -0.4168 -4.1337 22 6 2.6304 0.5297 -5.0988 23 6 3.7451 0.9143 -5.8627 24 6 3.6527 1.8888 -6.8703 25 7 4.7182 2.2199 -7.5609 26 6 5.9070 1.6715 -7.3541 27 6 6.1027 0.7178 -6.4013 28 6 5.0058 0.3089 -5.6196 29 6 5.1272 -0.6640 -4.6190 30 1 -0.4851 0.8400 -0.0004 31 1 -0.7300 -2.6169 0.4962 32 1 0.0515 -1.4734 1.6183 33 1 -0.5693 -3.6956 2.6784 34 1 1.1622 -3.2958 2.7951 35 1 2.0997 -5.6721 0.2283 36 1 2.7207 -4.4500 1.3645 37 1 3.4954 -4.3587 -1.5018 38 1 3.8746 -3.0918 -0.3104 39 1 2.1852 -1.9819 -2.2829 40 1 1.9035 -0.7120 -3.5535 41 1 1.6678 0.9851 -5.2791 42 1 2.7054 2.3645 -7.0768 43 1 6.7441 1.9898 -7.9578 44 1 7.0799 0.2840 -6.2487 45 1 6.0814 -1.1312 -4.4247 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001051199550.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:43:57 Heat of formation + Delta-G solvation = 6.237549 kcal Electronic energy + Delta-G solvation = -29777.807356 eV Core-core repulsion = 25761.165492 eV Total energy + Delta-G solvation = -4016.641864 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.91739 -39.48994 -38.44278 -36.91362 -35.42771 -33.74290 -33.05728 -31.99339 -31.08715 -30.40547 -29.65965 -27.32033 -26.11737 -24.25781 -23.80858 -23.52279 -22.34894 -21.72039 -20.52129 -19.75364 -18.22484 -17.67132 -16.87140 -16.57585 -15.98483 -15.94440 -15.73684 -14.99785 -14.95814 -14.75550 -14.52808 -14.26666 -14.03522 -13.81535 -13.72606 -13.66312 -13.56237 -13.05528 -12.80572 -12.72405 -12.35965 -12.16325 -11.81632 -11.61748 -11.12390 -11.12039 -10.94409 -10.81946 -10.48134 -10.33598 -10.31258 -10.12949 -9.80713 -9.71073 -9.55604 -9.13738 -9.04901 -8.76067 -8.41016 -8.14522 -6.80906 -5.99370 -3.49699 0.17273 0.66846 1.79797 2.62193 3.21806 3.31152 3.34914 3.49360 3.60033 4.07561 4.26868 4.27698 4.45406 4.47097 4.66460 4.69962 4.90609 4.99197 5.06525 5.14971 5.18777 5.21723 5.46822 5.51049 5.61674 5.64274 5.68061 5.78309 5.88137 5.94823 5.99071 6.01736 6.09831 6.15067 6.26666 6.30609 6.31653 6.45780 6.50559 6.67027 6.69638 6.94332 7.00073 7.41741 7.62221 7.80485 7.82736 8.03505 8.20729 8.61958 8.97246 9.57382 10.16962 11.06735 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.014930 B = 0.003473 C = 0.003050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.980395 B = 8061.394697 C = 9178.385720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.014 3.986 3 Si 0.890 3.110 4 H -0.282 1.282 5 H -0.288 1.288 6 H -0.279 1.279 7 C -0.258 4.258 8 H 0.072 0.928 9 N -0.591 5.591 10 C 0.144 3.856 11 C 0.034 3.966 12 O -0.392 6.392 13 C 0.056 3.944 14 C 0.124 3.876 15 H 0.042 0.958 16 C 0.135 3.865 17 N -0.685 5.685 18 C 0.548 3.452 19 O -0.556 6.556 20 C -0.099 4.099 21 C -0.083 4.083 22 C -0.094 4.094 23 C -0.098 4.098 24 C 0.143 3.857 25 N -0.488 5.488 26 C 0.066 3.934 27 C -0.144 4.144 28 C -0.036 4.036 29 C -0.053 4.053 30 H 0.256 0.744 31 H 0.030 0.970 32 H 0.092 0.908 33 H 0.080 0.920 34 H 0.041 0.959 35 H 0.083 0.917 36 H 0.047 0.953 37 H 0.062 0.938 38 H 0.070 0.930 39 H 0.415 0.585 40 H 0.140 0.860 41 H 0.139 0.861 42 H 0.164 0.836 43 H 0.152 0.848 44 H 0.139 0.861 45 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.702 -1.225 -8.947 10.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.186 4.186 3 Si 0.719 3.281 4 H -0.208 1.208 5 H -0.214 1.214 6 H -0.204 1.204 7 C -0.387 4.387 8 H 0.090 0.910 9 N -0.317 5.317 10 C 0.019 3.981 11 C -0.043 4.043 12 O -0.310 6.310 13 C -0.023 4.023 14 C 0.017 3.983 15 H 0.060 0.940 16 C 0.011 3.989 17 N -0.336 5.336 18 C 0.334 3.666 19 O -0.437 6.437 20 C -0.104 4.104 21 C -0.102 4.102 22 C -0.113 4.113 23 C -0.100 4.100 24 C -0.028 4.028 25 N -0.196 5.196 26 C -0.077 4.077 27 C -0.164 4.164 28 C -0.041 4.041 29 C -0.072 4.072 30 H 0.066 0.934 31 H 0.048 0.952 32 H 0.110 0.890 33 H 0.098 0.902 34 H 0.059 0.941 35 H 0.101 0.899 36 H 0.065 0.935 37 H 0.080 0.920 38 H 0.088 0.912 39 H 0.255 0.745 40 H 0.158 0.842 41 H 0.157 0.843 42 H 0.181 0.819 43 H 0.169 0.831 44 H 0.157 0.843 45 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 5.276 -1.001 -9.439 10.860 hybrid contribution 0.180 0.864 0.777 1.176 sum 5.456 -0.137 -8.662 10.238 Atomic orbital electron populations 1.69976 1.05125 1.25769 1.53202 1.25111 0.95241 0.98071 1.00203 0.86484 0.79427 0.83927 0.78277 1.20805 1.21382 1.20414 1.19199 0.91282 0.83320 1.44929 0.91047 1.44086 1.32556 1.02955 1.52127 1.21412 0.88952 0.96762 0.90986 1.23355 0.99214 0.86562 0.95211 1.87809 1.40639 1.36208 1.66385 1.22857 0.86837 0.98655 0.93958 1.21439 0.93622 0.89400 0.93797 0.94030 1.21229 0.97830 0.90175 0.89714 1.45948 1.12334 1.40635 1.34691 1.18157 0.84422 0.82296 0.81729 1.90718 1.27588 1.55791 1.69599 1.20164 0.94350 0.98309 0.97552 1.21205 0.97151 0.95228 0.96581 1.20903 0.97987 0.97251 0.95190 1.19161 0.94099 0.98396 0.98361 1.23234 0.97298 0.92410 0.89883 1.67369 0.99447 1.26250 1.26570 1.22132 0.94738 0.94129 0.96651 1.21964 0.98965 0.98850 0.96634 1.18126 0.93275 0.96422 0.96266 1.21381 0.98938 0.94419 0.92493 0.93354 0.95189 0.89032 0.90204 0.94096 0.89862 0.93456 0.92005 0.91180 0.74535 0.84212 0.84319 0.81852 0.83064 0.84306 0.83739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.03 11.17 55.49 0.62 -22.42 16 2 C 0.01 0.34 5.06 -17.43 -0.09 0.25 16 3 Si 0.89 20.23 29.57 -169.99 -5.03 15.21 16 4 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.26 -6.12 7.09 -15.06 -0.11 -6.22 16 8 H 0.07 1.75 5.84 -52.48 -0.31 1.44 16 9 N -0.59 -13.01 3.03 -164.29 -0.50 -13.50 16 10 C 0.14 3.14 5.38 -3.52 -0.02 3.12 16 11 C 0.03 0.64 6.99 37.31 0.26 0.90 16 12 O -0.39 -7.35 10.74 -35.23 -0.38 -7.73 16 13 C 0.06 0.95 6.29 37.31 0.23 1.18 16 14 C 0.12 2.32 3.20 -67.42 -0.22 2.10 16 15 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 16 C 0.13 2.38 4.44 -4.04 -0.02 2.36 16 17 N -0.68 -12.35 3.76 -61.23 -0.23 -12.58 16 18 C 0.55 9.99 7.77 -12.31 -0.10 9.89 16 19 O -0.56 -11.35 16.30 5.33 0.09 -11.26 16 20 C -0.10 -1.60 5.87 -104.95 -0.62 -2.22 16 21 C -0.08 -1.24 9.44 -39.55 -0.37 -1.61 16 22 C -0.09 -1.22 9.77 -39.59 -0.39 -1.61 16 23 C -0.10 -1.29 5.75 -106.78 -0.61 -1.90 16 24 C 0.14 1.69 11.04 -16.97 -0.19 1.50 16 25 N -0.49 -6.14 10.29 -13.15 -0.14 -6.28 16 26 C 0.07 0.73 11.07 -17.97 -0.20 0.54 16 27 C -0.14 -1.63 9.88 -39.35 -0.39 -2.02 16 28 C -0.04 -0.48 5.74 -106.83 -0.61 -1.10 16 29 C -0.05 -0.78 9.38 -38.78 -0.36 -1.14 16 30 H 0.26 6.49 8.31 -40.82 -0.34 6.15 16 31 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.09 2.20 6.36 -51.93 -0.33 1.87 16 33 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 34 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.07 1.35 7.52 -51.93 -0.39 0.96 16 39 H 0.42 7.66 5.37 -40.82 -0.22 7.44 16 40 H 0.14 2.11 6.34 -52.49 -0.33 1.78 16 41 H 0.14 1.44 8.06 -52.48 -0.42 1.01 16 42 H 0.16 1.43 8.06 -52.49 -0.42 1.00 16 43 H 0.15 1.23 8.06 -52.49 -0.42 0.81 16 44 H 0.14 1.20 8.06 -52.48 -0.42 0.78 16 45 H 0.14 2.00 7.62 -52.49 -0.40 1.60 16 LS Contribution 366.90 15.07 5.53 5.53 Total: -1.00 -29.32 366.90 -9.59 -38.90 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: -5.76 Total: 10.10 kcal Atomic # 6 Polarization: 7.82 SS G_CDS: -3.79 Total: 4.03 kcal Atomic # 7 Polarization: -54.53 SS G_CDS: -0.24 Total: -54.78 kcal Atomic # 8 Polarization: -18.70 SS G_CDS: -0.29 Total: -18.99 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.03 Total: 15.21 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -29.32 -9.59 -38.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051199550.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.142 kcal (2) G-P(sol) polarization free energy of solvation -29.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.905 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds