Wall clock time and date at job start Tue Mar 31 2020 23:43:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86799 * 119.99851 * 2 1 4 4 H 1.48503 * 109.46948 * 269.99822 * 3 2 1 5 5 H 1.48506 * 109.47164 * 29.99664 * 3 2 1 6 6 H 1.48501 * 109.47267 * 149.99703 * 3 2 1 7 7 C 1.38809 * 119.99736 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99640 * 169.22278 * 7 2 1 9 9 N 1.36930 * 120.00478 * 349.21658 * 7 2 1 10 10 C 1.47169 * 120.99319 * 328.40636 * 9 7 2 11 11 C 1.53297 * 108.41238 * 230.54472 * 10 9 7 12 12 O 1.42966 * 109.22064 * 307.71284 * 11 10 9 13 13 C 1.42967 * 114.16368 * 62.58470 * 12 11 10 14 14 C 1.47151 * 120.98412 * 148.47844 * 9 7 2 15 15 H 1.09001 * 109.68316 * 249.20056 * 14 9 7 16 16 C 1.53004 * 109.68170 * 9.71223 * 14 9 7 17 17 N 1.46508 * 109.47196 * 298.63569 * 16 14 9 18 18 C 1.34771 * 119.99791 * 179.97438 * 17 16 14 19 19 O 1.21545 * 120.00235 * 359.97438 * 18 17 16 20 20 C 1.47887 * 119.99803 * 179.97438 * 18 17 16 21 21 C 1.40601 * 119.73137 * 359.97438 * 20 18 17 22 22 C 1.35848 * 120.95474 * 180.02562 * 21 20 18 23 23 C 1.40499 * 119.88033 * 0.02562 * 22 21 20 24 24 C 1.40479 * 121.84739 * 180.02562 * 23 22 21 25 25 N 1.31218 * 119.94094 * 179.97438 * 24 23 22 26 26 C 1.32549 * 122.80696 * 359.97438 * 25 24 23 27 27 C 1.36222 * 121.84201 * 0.02562 * 26 25 24 28 28 C 1.40760 * 118.67836 * 0.02562 * 27 26 25 29 29 C 1.38528 * 119.73199 * 179.97438 * 20 18 17 30 30 H 0.97002 * 120.00358 * 0.02562 * 1 2 3 31 31 H 1.08989 * 109.65326 * 110.81692 * 10 9 7 32 32 H 1.09000 * 109.67774 * 350.28113 * 10 9 7 33 33 H 1.09001 * 109.51136 * 187.79445 * 11 10 9 34 34 H 1.08996 * 109.51410 * 67.64038 * 11 10 9 35 35 H 1.09002 * 109.51129 * 177.49505 * 13 12 11 36 36 H 1.09000 * 109.55590 * 57.36750 * 13 12 11 37 37 H 1.08995 * 109.47319 * 178.63438 * 16 14 9 38 38 H 1.09002 * 109.46535 * 58.62931 * 16 14 9 39 39 H 0.96996 * 119.99754 * 359.97438 * 17 16 14 40 40 H 1.08002 * 119.51873 * 359.72456 * 21 20 18 41 41 H 1.08003 * 120.05963 * 179.97438 * 22 21 20 42 42 H 1.08000 * 120.03057 * 359.92831 * 24 23 22 43 43 H 1.07999 * 119.08003 * 180.02562 * 26 25 24 44 44 H 1.08005 * 120.66133 * 180.02562 * 27 26 25 45 45 H 1.08002 * 120.36592 * 0.02562 * 29 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4403 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0760 -1.2105 -0.1744 9 7 1.3438 -2.3775 0.2229 10 6 0.1596 -2.4238 1.0955 11 6 0.3520 -3.5539 2.1133 12 8 0.6774 -4.7612 1.4201 13 6 1.9042 -4.7034 0.6883 14 6 1.7913 -3.6321 -0.4023 15 1 1.0664 -3.9473 -1.1528 16 6 3.1562 -3.4214 -1.0609 17 7 3.0414 -2.4027 -2.1075 18 6 4.1253 -2.0503 -2.8266 19 8 5.1983 -2.5773 -2.6066 20 6 4.0093 -1.0224 -3.8835 21 6 2.7653 -0.4168 -4.1337 22 6 2.6304 0.5297 -5.0988 23 6 3.7451 0.9143 -5.8627 24 6 3.6527 1.8888 -6.8703 25 7 4.7182 2.2199 -7.5609 26 6 5.9070 1.6715 -7.3541 27 6 6.1027 0.7178 -6.4013 28 6 5.0058 0.3089 -5.6196 29 6 5.1272 -0.6640 -4.6190 30 1 -0.4851 0.8400 -0.0004 31 1 -0.7300 -2.6169 0.4962 32 1 0.0515 -1.4734 1.6183 33 1 -0.5693 -3.6956 2.6784 34 1 1.1622 -3.2958 2.7951 35 1 2.0997 -5.6721 0.2283 36 1 2.7207 -4.4500 1.3645 37 1 3.4954 -4.3587 -1.5018 38 1 3.8746 -3.0918 -0.3104 39 1 2.1852 -1.9819 -2.2829 40 1 1.9035 -0.7120 -3.5535 41 1 1.6678 0.9851 -5.2791 42 1 2.7054 2.3645 -7.0768 43 1 6.7441 1.9898 -7.9578 44 1 7.0799 0.2840 -6.2487 45 1 6.0814 -1.1312 -4.4247 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001051199550.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:43:56 Heat of formation + Delta-G solvation = -11.243363 kcal Electronic energy + Delta-G solvation = -29778.565385 eV Core-core repulsion = 25761.165492 eV Total energy + Delta-G solvation = -4017.399893 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.94869 -40.86115 -39.92638 -38.00967 -36.97807 -35.38521 -34.05619 -33.46894 -32.51717 -31.86043 -30.64701 -29.01894 -27.49547 -25.49476 -25.19921 -24.80562 -23.50931 -23.09485 -21.84769 -21.36833 -19.52752 -18.74654 -18.36221 -17.79037 -17.55609 -17.18150 -17.06574 -16.36562 -16.27670 -16.18005 -15.93466 -15.58145 -15.46915 -15.15007 -15.11615 -14.75205 -14.68680 -14.62886 -14.29414 -13.85339 -13.61575 -13.40908 -13.17950 -13.02221 -12.87110 -12.74229 -12.51611 -12.18241 -12.12377 -12.00294 -11.86443 -11.32756 -11.28249 -11.15737 -10.67586 -10.57530 -10.53100 -10.26965 -9.88478 -9.13386 -8.61878 -7.88334 -5.39140 -0.85066 -0.36125 0.79134 1.38009 1.44468 1.47608 1.49002 2.17332 2.35856 2.43464 3.03227 3.03910 3.27820 3.42266 3.45986 3.50864 3.58655 3.73531 3.82439 3.96758 4.01901 4.06969 4.20760 4.28162 4.33018 4.47845 4.55526 4.59301 4.63388 4.65683 4.66377 4.71113 4.75303 4.91081 5.00442 5.01861 5.10943 5.20944 5.24705 5.29851 5.47178 5.58765 5.63355 5.68376 5.69238 6.29710 6.36897 6.58425 6.92980 7.10348 7.17839 7.75499 8.32212 9.15843 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.014930 B = 0.003473 C = 0.003050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.980395 B = 8061.394697 C = 9178.385720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.020 4.020 3 Si 0.932 3.068 4 H -0.277 1.277 5 H -0.294 1.294 6 H -0.288 1.288 7 C -0.244 4.244 8 H 0.064 0.936 9 N -0.605 5.605 10 C 0.150 3.850 11 C 0.045 3.955 12 O -0.397 6.397 13 C 0.057 3.943 14 C 0.126 3.874 15 H 0.040 0.960 16 C 0.140 3.860 17 N -0.687 5.687 18 C 0.547 3.453 19 O -0.584 6.584 20 C -0.121 4.121 21 C -0.102 4.102 22 C -0.084 4.084 23 C -0.109 4.109 24 C 0.144 3.856 25 N -0.503 5.503 26 C 0.067 3.933 27 C -0.146 4.146 28 C -0.050 4.050 29 C -0.052 4.052 30 H 0.251 0.749 31 H 0.009 0.991 32 H 0.065 0.935 33 H 0.104 0.896 34 H 0.043 0.957 35 H 0.118 0.882 36 H 0.049 0.951 37 H 0.084 0.916 38 H 0.053 0.947 39 H 0.413 0.587 40 H 0.131 0.869 41 H 0.166 0.834 42 H 0.193 0.807 43 H 0.182 0.818 44 H 0.164 0.836 45 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.493 -1.223 -10.199 11.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.218 4.218 3 Si 0.761 3.239 4 H -0.204 1.204 5 H -0.220 1.220 6 H -0.214 1.214 7 C -0.374 4.374 8 H 0.082 0.918 9 N -0.331 5.331 10 C 0.024 3.976 11 C -0.032 4.032 12 O -0.315 6.315 13 C -0.021 4.021 14 C 0.020 3.980 15 H 0.057 0.943 16 C 0.016 3.984 17 N -0.337 5.337 18 C 0.335 3.665 19 O -0.466 6.466 20 C -0.125 4.125 21 C -0.121 4.121 22 C -0.103 4.103 23 C -0.111 4.111 24 C -0.027 4.027 25 N -0.211 5.211 26 C -0.076 4.076 27 C -0.166 4.166 28 C -0.055 4.055 29 C -0.072 4.072 30 H 0.061 0.939 31 H 0.027 0.973 32 H 0.084 0.916 33 H 0.122 0.878 34 H 0.061 0.939 35 H 0.136 0.864 36 H 0.067 0.933 37 H 0.102 0.898 38 H 0.071 0.929 39 H 0.251 0.749 40 H 0.148 0.852 41 H 0.183 0.817 42 H 0.210 0.790 43 H 0.199 0.801 44 H 0.181 0.819 45 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 6.069 -1.017 -10.693 12.338 hybrid contribution 0.008 0.875 1.062 1.376 sum 6.077 -0.142 -9.631 11.389 Atomic orbital electron populations 1.70072 1.05852 1.25642 1.54983 1.25464 0.95587 0.99684 1.01051 0.85833 0.77968 0.81997 0.78070 1.20367 1.22000 1.21395 1.19183 0.90908 0.84077 1.43189 0.91847 1.44273 1.32383 1.03669 1.52756 1.21239 0.88218 0.96887 0.91239 1.23223 1.00522 0.85325 0.94163 1.87812 1.41423 1.35829 1.66469 1.22985 0.86247 0.99635 0.93259 1.21560 0.93745 0.88406 0.94319 0.94275 1.21200 0.96807 0.91038 0.89394 1.45966 1.12252 1.40730 1.34733 1.18497 0.83840 0.82305 0.81868 1.90685 1.28368 1.56976 1.70618 1.20072 0.95563 0.98876 0.97987 1.21145 0.96454 0.96620 0.97856 1.21187 0.99220 0.96040 0.93897 1.19389 0.93986 0.98896 0.98876 1.23683 0.98366 0.91730 0.88939 1.67463 1.00124 1.26662 1.26875 1.22667 0.95155 0.93335 0.96422 1.22244 0.99422 0.98813 0.96078 1.18370 0.94468 0.96306 0.96352 1.21467 0.98551 0.94597 0.92535 0.93899 0.97296 0.91640 0.87776 0.93905 0.86380 0.93272 0.89763 0.92901 0.74862 0.85164 0.81698 0.79023 0.80070 0.81853 0.83501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.24 11.17 21.65 0.24 -47.99 16 2 C -0.02 -1.02 5.06 84.86 0.43 -0.59 16 3 Si 0.93 42.13 29.57 68.60 2.03 44.16 16 4 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 5 H -0.29 -13.46 7.11 99.48 0.71 -12.76 16 6 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 7 C -0.24 -11.70 7.09 84.03 0.60 -11.11 16 8 H 0.06 3.15 5.84 -2.91 -0.02 3.14 16 9 N -0.60 -26.75 3.03 -673.70 -2.04 -28.79 16 10 C 0.15 6.58 5.38 86.35 0.46 7.05 16 11 C 0.05 1.63 6.99 72.08 0.50 2.14 16 12 O -0.40 -14.10 10.74 -148.98 -1.60 -15.70 16 13 C 0.06 1.82 6.29 72.08 0.45 2.28 16 14 C 0.13 4.60 3.20 44.97 0.14 4.75 16 15 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 16 C 0.14 4.89 4.44 86.38 0.38 5.27 16 17 N -0.69 -25.12 3.76 -465.92 -1.75 -26.87 16 18 C 0.55 20.30 7.77 86.80 0.67 20.97 16 19 O -0.58 -24.11 16.30 -3.86 -0.06 -24.18 16 20 C -0.12 -3.94 5.87 -20.08 -0.12 -4.05 16 21 C -0.10 -3.07 9.44 22.29 0.21 -2.86 16 22 C -0.08 -2.09 9.77 22.27 0.22 -1.88 16 23 C -0.11 -2.70 5.75 -21.26 -0.12 -2.82 16 24 C 0.14 3.03 11.04 85.33 0.94 3.98 16 25 N -0.50 -11.30 10.29 -195.51 -2.01 -13.31 16 26 C 0.07 1.28 11.07 84.11 0.93 2.21 16 27 C -0.15 -2.95 9.88 22.42 0.22 -2.73 16 28 C -0.05 -1.28 5.74 -21.29 -0.12 -1.40 16 29 C -0.05 -1.52 9.38 22.79 0.21 -1.30 16 30 H 0.25 13.01 8.31 -92.71 -0.77 12.24 16 31 H 0.01 0.42 8.14 -2.39 -0.02 0.41 16 32 H 0.07 3.22 6.36 -2.39 -0.02 3.21 16 33 H 0.10 3.22 8.14 -2.39 -0.02 3.20 16 34 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.12 2.96 8.14 -2.39 -0.02 2.94 16 36 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 38 H 0.05 2.04 7.52 -2.39 -0.02 2.02 16 39 H 0.41 15.62 5.37 -92.71 -0.50 15.12 16 40 H 0.13 4.07 6.34 -2.91 -0.02 4.06 16 41 H 0.17 3.09 8.06 -2.91 -0.02 3.07 16 42 H 0.19 2.75 8.06 -2.91 -0.02 2.72 16 43 H 0.18 2.28 8.06 -2.91 -0.02 2.26 16 44 H 0.16 2.38 8.06 -2.91 -0.02 2.36 16 45 H 0.15 4.05 7.62 -2.91 -0.02 4.03 16 Total: -1.00 -63.20 366.90 1.35 -61.85 By element: Atomic # 1 Polarization: 30.40 SS G_CDS: 0.53 Total: 30.94 kcal Atomic # 6 Polarization: 13.87 SS G_CDS: 6.02 Total: 19.89 kcal Atomic # 7 Polarization: -111.40 SS G_CDS: -5.57 Total: -116.96 kcal Atomic # 8 Polarization: -38.21 SS G_CDS: -1.66 Total: -39.87 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 2.03 Total: 44.16 kcal Total: -63.20 1.35 -61.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051199550.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.606 kcal (2) G-P(sol) polarization free energy of solvation -63.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds