Wall clock time and date at job start Tue Mar 31 2020 23:44:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86806 * 119.99827 * 2 1 4 4 H 1.48496 * 109.46807 * 270.00131 * 3 2 1 5 5 H 1.48504 * 109.46992 * 29.99858 * 3 2 1 6 6 H 1.48495 * 109.47192 * 150.00104 * 3 2 1 7 7 C 1.38808 * 119.99857 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99559 * 170.29753 * 7 2 1 9 9 N 1.36938 * 120.00492 * 350.29343 * 7 2 1 10 10 C 1.47164 * 120.98702 * 328.58640 * 9 7 2 11 11 C 1.53297 * 108.41277 * 230.53954 * 10 9 7 12 12 O 1.42962 * 109.22239 * 307.72382 * 11 10 9 13 13 C 1.42966 * 114.16680 * 62.57886 * 12 11 10 14 14 C 1.47147 * 120.98316 * 148.65845 * 9 7 2 15 15 H 1.08996 * 109.68549 * 249.20350 * 14 9 7 16 16 C 1.53006 * 109.68157 * 9.71904 * 14 9 7 17 17 N 1.46506 * 109.47022 * 298.59813 * 16 14 9 18 18 C 1.34769 * 119.99964 * 179.97438 * 17 16 14 19 19 O 1.21598 * 120.00284 * 0.02562 * 18 17 16 20 20 C 1.47456 * 119.99692 * 179.97438 * 18 17 16 21 21 C 1.38854 * 120.46412 * 354.24201 * 20 18 17 22 22 C 1.38900 * 120.67738 * 179.97438 * 21 20 18 23 23 C 1.36374 * 121.27371 * 0.02562 * 22 21 20 24 24 C 1.40397 * 119.98360 * 0.02562 * 23 22 21 25 25 C 1.40463 * 121.95650 * 179.72125 * 24 23 22 26 26 N 1.31282 * 119.88267 * 179.71894 * 25 24 23 27 27 C 1.32552 * 122.73296 * 0.59278 * 26 25 24 28 28 C 1.36323 * 121.82101 * 359.68501 * 27 26 25 29 29 C 1.40290 * 118.70010 * 0.02562 * 28 27 26 30 30 H 0.97002 * 120.00058 * 359.97438 * 1 2 3 31 31 H 1.08999 * 109.64852 * 110.82135 * 10 9 7 32 32 H 1.08995 * 109.69112 * 350.28714 * 10 9 7 33 33 H 1.08997 * 109.51185 * 187.79726 * 11 10 9 34 34 H 1.08994 * 109.51056 * 67.64523 * 11 10 9 35 35 H 1.09005 * 109.51006 * 177.49789 * 13 12 11 36 36 H 1.08998 * 109.55615 * 57.37072 * 13 12 11 37 37 H 1.08994 * 109.47228 * 178.60130 * 16 14 9 38 38 H 1.08998 * 109.47258 * 58.59967 * 16 14 9 39 39 H 0.97004 * 119.99352 * 0.02562 * 17 16 14 40 40 H 1.07998 * 119.66051 * 359.97033 * 21 20 18 41 41 H 1.08002 * 119.36154 * 179.97438 * 22 21 20 42 42 H 1.07991 * 120.00844 * 180.02562 * 23 22 21 43 43 H 1.08007 * 120.06051 * 0.02562 * 25 24 23 44 44 H 1.08004 * 119.08940 * 179.71603 * 27 26 25 45 45 H 1.08002 * 120.65524 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4403 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0787 -1.2088 -0.1571 9 7 1.3404 -2.3795 0.2010 10 6 0.1399 -2.4330 1.0506 11 6 0.3135 -3.5711 2.0629 12 8 0.6527 -4.7727 1.3666 13 6 1.8932 -4.7087 0.6587 14 6 1.8004 -3.6290 -0.4255 15 1 1.0901 -3.9385 -1.1921 16 6 3.1775 -3.4125 -1.0562 17 7 3.0819 -2.3862 -2.0974 18 6 4.1791 -2.0278 -2.7930 19 8 5.2484 -2.5565 -2.5568 20 6 4.0827 -0.9952 -3.8412 21 6 2.8484 -0.4715 -4.2022 22 6 2.7525 0.5016 -5.1886 23 6 3.8605 0.9705 -5.8306 24 6 5.1290 0.4686 -5.4985 25 6 6.2967 0.9176 -6.1369 26 7 7.4628 0.4240 -5.7903 27 6 7.5982 -0.5057 -4.8552 28 6 6.5253 -1.0098 -4.1821 29 6 5.2460 -0.5260 -4.4944 30 1 -0.4850 0.8401 0.0004 31 1 -0.7381 -2.6219 0.4329 32 1 0.0212 -1.4870 1.5786 33 1 -0.6182 -3.7175 2.6093 34 1 1.1105 -3.3180 2.7619 35 1 2.0980 -5.6736 0.1950 36 1 2.6966 -4.4603 1.3522 37 1 3.5258 -4.3463 -1.4975 38 1 3.8813 -3.0881 -0.2897 39 1 2.2289 -1.9643 -2.2854 40 1 1.9537 -0.8246 -3.7109 41 1 1.7816 0.8939 -5.4529 42 1 3.7624 1.7278 -6.5942 43 1 6.2360 1.6712 -6.9083 44 1 8.5860 -0.8736 -4.6197 45 1 6.6573 -1.7675 -3.4238 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001051246019.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:44:02 Heat of formation + Delta-G solvation = 12.949287 kcal Electronic energy + Delta-G solvation = -30193.606895 eV Core-core repulsion = 26177.256074 eV Total energy + Delta-G solvation = -4016.350821 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.94962 -39.29839 -38.37153 -37.06743 -35.47733 -33.76557 -32.80334 -31.90743 -31.00995 -30.52020 -29.61308 -27.29467 -25.81015 -24.39093 -23.54165 -23.37950 -23.01195 -21.66152 -20.26770 -19.70974 -17.98708 -17.82552 -16.79297 -16.41164 -15.99874 -15.94879 -15.78906 -15.05161 -14.92966 -14.78097 -14.54570 -14.31000 -14.15802 -13.82447 -13.71350 -13.63865 -13.26499 -12.96752 -12.71638 -12.46117 -12.13983 -11.93754 -11.84256 -11.66792 -11.53222 -11.12340 -10.95846 -10.81805 -10.48813 -10.33284 -10.13627 -10.09202 -9.79454 -9.71741 -9.19773 -9.08954 -8.99549 -8.78454 -8.48199 -8.00474 -6.81833 -5.99929 -3.50479 0.17867 0.92127 1.74675 2.82105 3.21099 3.30268 3.34466 3.44608 3.59166 4.18909 4.26208 4.44153 4.46710 4.62300 4.71112 4.79244 4.92890 5.02595 5.07462 5.14186 5.18083 5.42634 5.48747 5.60503 5.66661 5.75771 5.78611 5.89875 5.94561 5.97417 5.99342 6.03921 6.09380 6.14839 6.26696 6.27948 6.42581 6.45473 6.64162 6.71856 6.76954 6.99130 7.00426 7.42388 7.61267 7.80269 7.99279 8.01217 8.20132 8.61934 8.96716 9.56683 10.15894 11.06022 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.013721 B = 0.003904 C = 0.003383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2040.188125 B = 7170.951153 C = 8274.353178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.013 3.987 3 Si 0.891 3.109 4 H -0.282 1.282 5 H -0.288 1.288 6 H -0.279 1.279 7 C -0.257 4.257 8 H 0.072 0.928 9 N -0.592 5.592 10 C 0.144 3.856 11 C 0.034 3.966 12 O -0.392 6.392 13 C 0.056 3.944 14 C 0.124 3.876 15 H 0.042 0.958 16 C 0.135 3.865 17 N -0.684 5.684 18 C 0.555 3.445 19 O -0.554 6.554 20 C -0.121 4.121 21 C -0.050 4.050 22 C -0.124 4.124 23 C -0.069 4.069 24 C -0.121 4.121 25 C 0.136 3.864 26 N -0.491 5.491 27 C 0.064 3.936 28 C -0.148 4.148 29 C 0.010 3.990 30 H 0.256 0.744 31 H 0.030 0.970 32 H 0.093 0.907 33 H 0.080 0.920 34 H 0.041 0.959 35 H 0.083 0.917 36 H 0.047 0.953 37 H 0.062 0.938 38 H 0.070 0.930 39 H 0.415 0.585 40 H 0.139 0.861 41 H 0.134 0.866 42 H 0.135 0.865 43 H 0.161 0.839 44 H 0.152 0.848 45 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.150 -1.400 -8.508 9.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.187 4.187 3 Si 0.720 3.280 4 H -0.209 1.209 5 H -0.214 1.214 6 H -0.204 1.204 7 C -0.386 4.386 8 H 0.090 0.910 9 N -0.318 5.318 10 C 0.019 3.981 11 C -0.044 4.044 12 O -0.310 6.310 13 C -0.023 4.023 14 C 0.017 3.983 15 H 0.060 0.940 16 C 0.011 3.989 17 N -0.335 5.335 18 C 0.342 3.658 19 O -0.436 6.436 20 C -0.124 4.124 21 C -0.070 4.070 22 C -0.142 4.142 23 C -0.089 4.089 24 C -0.123 4.123 25 C -0.036 4.036 26 N -0.199 5.199 27 C -0.079 4.079 28 C -0.167 4.167 29 C 0.004 3.996 30 H 0.066 0.934 31 H 0.048 0.952 32 H 0.111 0.889 33 H 0.098 0.902 34 H 0.059 0.941 35 H 0.101 0.899 36 H 0.065 0.935 37 H 0.081 0.919 38 H 0.089 0.911 39 H 0.254 0.746 40 H 0.157 0.843 41 H 0.152 0.848 42 H 0.153 0.847 43 H 0.178 0.822 44 H 0.169 0.831 45 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 5.476 -1.600 -8.621 10.338 hybrid contribution -0.778 1.280 0.469 1.570 sum 4.698 -0.320 -8.152 9.415 Atomic orbital electron populations 1.69970 1.05114 1.25742 1.53328 1.25117 0.95272 0.98073 1.00222 0.86467 0.79414 0.83914 0.78232 1.20888 1.21364 1.20395 1.19205 0.91104 0.83201 1.45120 0.91021 1.44092 1.31044 1.03174 1.53455 1.21429 0.88651 0.96729 0.91337 1.23359 0.99124 0.86697 0.95181 1.87807 1.39396 1.36551 1.67292 1.22856 0.86565 0.98604 0.94279 1.21439 0.93471 0.89432 0.93921 0.94045 1.21235 0.97778 0.90001 0.89920 1.45946 1.11783 1.40171 1.35574 1.17934 0.84325 0.82092 0.81443 1.90526 1.27728 1.56290 1.69098 1.19936 0.93311 0.99991 0.99194 1.21674 0.97257 0.93691 0.94375 1.20888 0.99388 0.97369 0.96572 1.21125 0.91137 0.98126 0.98519 1.19006 0.95761 0.98862 0.98682 1.23099 0.86549 0.96975 0.96950 1.67362 1.27426 1.10427 1.14660 1.22288 0.99374 0.93551 0.92690 1.22985 0.91549 1.01076 1.01105 1.17949 0.93539 0.94204 0.93880 0.93361 0.95236 0.88861 0.90203 0.94104 0.89863 0.93452 0.91941 0.91125 0.74602 0.84340 0.84830 0.84726 0.82183 0.83094 0.80639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.13 11.09 55.49 0.62 -22.51 16 2 C 0.01 0.32 5.08 -17.43 -0.09 0.23 16 3 Si 0.89 20.37 29.57 -169.99 -5.03 15.34 16 4 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.26 -6.10 7.11 -15.06 -0.11 -6.21 16 8 H 0.07 1.76 5.82 -52.49 -0.31 1.45 16 9 N -0.59 -13.01 3.03 -164.30 -0.50 -13.51 16 10 C 0.14 3.14 5.37 -3.53 -0.02 3.12 16 11 C 0.03 0.64 6.99 37.31 0.26 0.90 16 12 O -0.39 -7.35 10.74 -35.23 -0.38 -7.73 16 13 C 0.06 0.95 6.29 37.31 0.23 1.18 16 14 C 0.12 2.31 3.20 -67.42 -0.22 2.09 16 15 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 16 C 0.13 2.36 4.44 -4.04 -0.02 2.34 16 17 N -0.68 -12.27 3.76 -61.37 -0.23 -12.50 16 18 C 0.55 10.13 7.73 -12.51 -0.10 10.03 16 19 O -0.55 -10.93 13.49 5.28 0.07 -10.86 16 20 C -0.12 -2.03 5.90 -104.70 -0.62 -2.64 16 21 C -0.05 -0.74 9.51 -39.11 -0.37 -1.11 16 22 C -0.12 -1.53 9.92 -40.01 -0.40 -1.93 16 23 C -0.07 -0.79 9.79 -39.44 -0.39 -1.18 16 24 C -0.12 -1.67 5.74 -106.88 -0.61 -2.28 16 25 C 0.14 1.71 11.05 -16.95 -0.19 1.52 16 26 N -0.49 -7.01 10.30 -13.11 -0.14 -7.14 16 27 C 0.06 0.91 11.07 -17.93 -0.20 0.71 16 28 C -0.15 -2.36 9.28 -39.50 -0.37 -2.72 16 29 C 0.01 0.17 5.77 -106.55 -0.61 -0.45 16 30 H 0.26 6.51 8.31 -40.82 -0.34 6.17 16 31 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.09 2.25 6.31 -51.93 -0.33 1.93 16 33 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 34 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 36 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.07 1.35 7.52 -51.93 -0.39 0.96 16 39 H 0.41 7.64 5.46 -40.82 -0.22 7.42 16 40 H 0.14 2.01 6.43 -52.49 -0.34 1.68 16 41 H 0.13 1.31 8.06 -52.49 -0.42 0.88 16 42 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 43 H 0.16 1.40 8.06 -52.48 -0.42 0.98 16 44 H 0.15 1.74 8.06 -52.48 -0.42 1.32 16 45 H 0.18 2.97 5.06 -52.49 -0.27 2.71 16 LS Contribution 361.67 15.07 5.45 5.45 Total: -1.00 -29.10 361.67 -9.57 -38.66 By element: Atomic # 1 Polarization: 16.84 SS G_CDS: -5.63 Total: 11.21 kcal Atomic # 6 Polarization: 7.40 SS G_CDS: -3.80 Total: 3.60 kcal Atomic # 7 Polarization: -55.42 SS G_CDS: -0.25 Total: -55.67 kcal Atomic # 8 Polarization: -18.28 SS G_CDS: -0.31 Total: -18.59 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.03 Total: 15.34 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -29.10 -9.57 -38.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051246019.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.614 kcal (2) G-P(sol) polarization free energy of solvation -29.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.665 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds