Wall clock time and date at job start Tue Mar 31 2020 23:44:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86806 * 119.99827 * 2 1 4 4 H 1.48496 * 109.46807 * 270.00131 * 3 2 1 5 5 H 1.48504 * 109.46992 * 29.99858 * 3 2 1 6 6 H 1.48495 * 109.47192 * 150.00104 * 3 2 1 7 7 C 1.38808 * 119.99857 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99559 * 170.29753 * 7 2 1 9 9 N 1.36938 * 120.00492 * 350.29343 * 7 2 1 10 10 C 1.47164 * 120.98702 * 328.58640 * 9 7 2 11 11 C 1.53297 * 108.41277 * 230.53954 * 10 9 7 12 12 O 1.42962 * 109.22239 * 307.72382 * 11 10 9 13 13 C 1.42966 * 114.16680 * 62.57886 * 12 11 10 14 14 C 1.47147 * 120.98316 * 148.65845 * 9 7 2 15 15 H 1.08996 * 109.68549 * 249.20350 * 14 9 7 16 16 C 1.53006 * 109.68157 * 9.71904 * 14 9 7 17 17 N 1.46506 * 109.47022 * 298.59813 * 16 14 9 18 18 C 1.34769 * 119.99964 * 179.97438 * 17 16 14 19 19 O 1.21598 * 120.00284 * 0.02562 * 18 17 16 20 20 C 1.47456 * 119.99692 * 179.97438 * 18 17 16 21 21 C 1.38854 * 120.46412 * 354.24201 * 20 18 17 22 22 C 1.38900 * 120.67738 * 179.97438 * 21 20 18 23 23 C 1.36374 * 121.27371 * 0.02562 * 22 21 20 24 24 C 1.40397 * 119.98360 * 0.02562 * 23 22 21 25 25 C 1.40463 * 121.95650 * 179.72125 * 24 23 22 26 26 N 1.31282 * 119.88267 * 179.71894 * 25 24 23 27 27 C 1.32552 * 122.73296 * 0.59278 * 26 25 24 28 28 C 1.36323 * 121.82101 * 359.68501 * 27 26 25 29 29 C 1.40290 * 118.70010 * 0.02562 * 28 27 26 30 30 H 0.97002 * 120.00058 * 359.97438 * 1 2 3 31 31 H 1.08999 * 109.64852 * 110.82135 * 10 9 7 32 32 H 1.08995 * 109.69112 * 350.28714 * 10 9 7 33 33 H 1.08997 * 109.51185 * 187.79726 * 11 10 9 34 34 H 1.08994 * 109.51056 * 67.64523 * 11 10 9 35 35 H 1.09005 * 109.51006 * 177.49789 * 13 12 11 36 36 H 1.08998 * 109.55615 * 57.37072 * 13 12 11 37 37 H 1.08994 * 109.47228 * 178.60130 * 16 14 9 38 38 H 1.08998 * 109.47258 * 58.59967 * 16 14 9 39 39 H 0.97004 * 119.99352 * 0.02562 * 17 16 14 40 40 H 1.07998 * 119.66051 * 359.97033 * 21 20 18 41 41 H 1.08002 * 119.36154 * 179.97438 * 22 21 20 42 42 H 1.07991 * 120.00844 * 180.02562 * 23 22 21 43 43 H 1.08007 * 120.06051 * 0.02562 * 25 24 23 44 44 H 1.08004 * 119.08940 * 179.71603 * 27 26 25 45 45 H 1.08002 * 120.65524 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4403 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0787 -1.2088 -0.1571 9 7 1.3404 -2.3795 0.2010 10 6 0.1399 -2.4330 1.0506 11 6 0.3135 -3.5711 2.0629 12 8 0.6527 -4.7727 1.3666 13 6 1.8932 -4.7087 0.6587 14 6 1.8004 -3.6290 -0.4255 15 1 1.0901 -3.9385 -1.1921 16 6 3.1775 -3.4125 -1.0562 17 7 3.0819 -2.3862 -2.0974 18 6 4.1791 -2.0278 -2.7930 19 8 5.2484 -2.5565 -2.5568 20 6 4.0827 -0.9952 -3.8412 21 6 2.8484 -0.4715 -4.2022 22 6 2.7525 0.5016 -5.1886 23 6 3.8605 0.9705 -5.8306 24 6 5.1290 0.4686 -5.4985 25 6 6.2967 0.9176 -6.1369 26 7 7.4628 0.4240 -5.7903 27 6 7.5982 -0.5057 -4.8552 28 6 6.5253 -1.0098 -4.1821 29 6 5.2460 -0.5260 -4.4944 30 1 -0.4850 0.8401 0.0004 31 1 -0.7381 -2.6219 0.4329 32 1 0.0212 -1.4870 1.5786 33 1 -0.6182 -3.7175 2.6093 34 1 1.1105 -3.3180 2.7619 35 1 2.0980 -5.6736 0.1950 36 1 2.6966 -4.4603 1.3522 37 1 3.5258 -4.3463 -1.4975 38 1 3.8813 -3.0881 -0.2897 39 1 2.2289 -1.9643 -2.2854 40 1 1.9537 -0.8246 -3.7109 41 1 1.7816 0.8939 -5.4529 42 1 3.7624 1.7278 -6.5942 43 1 6.2360 1.6712 -6.9083 44 1 8.5860 -0.8736 -4.6197 45 1 6.6573 -1.7675 -3.4238 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001051246019.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:44:01 Heat of formation + Delta-G solvation = -4.754339 kcal Electronic energy + Delta-G solvation = -30194.374582 eV Core-core repulsion = 26177.256074 eV Total energy + Delta-G solvation = -4017.118508 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.06904 -40.68887 -39.83937 -38.14599 -37.01545 -35.41285 -33.92079 -33.43070 -32.39049 -31.92545 -30.74193 -29.00707 -27.22281 -25.50307 -25.25333 -24.47486 -24.22785 -23.14569 -21.63998 -21.28335 -19.23488 -18.97503 -18.32869 -17.68671 -17.51141 -17.21752 -17.10969 -16.43982 -16.29408 -16.20972 -16.07222 -15.61876 -15.52909 -15.26688 -15.02920 -14.89005 -14.69866 -14.45381 -14.08758 -13.62449 -13.55477 -13.18354 -13.03787 -12.96421 -12.88548 -12.76945 -12.66879 -12.49638 -12.18849 -12.01766 -11.87775 -11.31985 -11.18254 -11.01746 -10.69569 -10.58926 -10.30201 -10.17644 -9.97170 -9.10058 -8.63352 -7.89714 -5.40706 -0.88819 -0.15576 0.63060 1.35836 1.42171 1.47440 1.70696 2.14917 2.30492 2.41735 3.02202 3.08938 3.26235 3.41266 3.49943 3.57086 3.63581 3.77531 3.89864 3.92443 4.01045 4.16823 4.21023 4.30382 4.39649 4.46810 4.52145 4.61520 4.62136 4.65357 4.72253 4.73760 4.83272 4.93860 4.99444 5.04482 5.10336 5.26081 5.29175 5.35873 5.49967 5.62941 5.66266 5.68319 5.77085 6.28372 6.35837 6.58066 6.94620 7.09140 7.20833 7.74004 8.30326 9.14269 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.013721 B = 0.003904 C = 0.003383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2040.188125 B = 7170.951153 C = 8274.353178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.022 4.022 3 Si 0.933 3.067 4 H -0.278 1.278 5 H -0.292 1.292 6 H -0.290 1.290 7 C -0.242 4.242 8 H 0.063 0.937 9 N -0.605 5.605 10 C 0.149 3.851 11 C 0.045 3.955 12 O -0.397 6.397 13 C 0.057 3.943 14 C 0.126 3.874 15 H 0.040 0.960 16 C 0.141 3.859 17 N -0.687 5.687 18 C 0.551 3.449 19 O -0.577 6.577 20 C -0.159 4.159 21 C -0.047 4.047 22 C -0.138 4.138 23 C -0.041 4.041 24 C -0.139 4.139 25 C 0.153 3.847 26 N -0.511 5.511 27 C 0.071 3.929 28 C -0.180 4.180 29 C -0.007 4.007 30 H 0.252 0.748 31 H 0.009 0.991 32 H 0.067 0.933 33 H 0.105 0.895 34 H 0.042 0.958 35 H 0.118 0.882 36 H 0.048 0.952 37 H 0.084 0.916 38 H 0.052 0.948 39 H 0.411 0.589 40 H 0.133 0.867 41 H 0.164 0.836 42 H 0.185 0.815 43 H 0.207 0.793 44 H 0.170 0.830 45 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.311 -0.637 -10.394 11.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.219 4.219 3 Si 0.762 3.238 4 H -0.204 1.204 5 H -0.218 1.218 6 H -0.216 1.216 7 C -0.372 4.372 8 H 0.081 0.919 9 N -0.331 5.331 10 C 0.024 3.976 11 C -0.033 4.033 12 O -0.315 6.315 13 C -0.021 4.021 14 C 0.020 3.980 15 H 0.058 0.942 16 C 0.017 3.983 17 N -0.337 5.337 18 C 0.340 3.660 19 O -0.461 6.461 20 C -0.162 4.162 21 C -0.067 4.067 22 C -0.156 4.156 23 C -0.061 4.061 24 C -0.141 4.141 25 C -0.019 4.019 26 N -0.219 5.219 27 C -0.071 4.071 28 C -0.199 4.199 29 C -0.013 4.013 30 H 0.061 0.939 31 H 0.027 0.973 32 H 0.085 0.915 33 H 0.123 0.877 34 H 0.060 0.940 35 H 0.136 0.864 36 H 0.067 0.933 37 H 0.102 0.898 38 H 0.070 0.930 39 H 0.250 0.750 40 H 0.150 0.850 41 H 0.181 0.819 42 H 0.202 0.798 43 H 0.223 0.777 44 H 0.187 0.813 45 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 5.646 -0.862 -10.506 11.958 hybrid contribution -0.794 1.054 0.964 1.634 sum 4.852 0.192 -9.541 10.706 Atomic orbital electron populations 1.70066 1.05787 1.25623 1.55108 1.25472 0.95643 0.99672 1.01132 0.85816 0.77860 0.82044 0.78034 1.20408 1.21810 1.21640 1.19176 0.90689 0.83992 1.43342 0.91950 1.44278 1.30883 1.03864 1.54093 1.21253 0.87940 0.96872 0.91537 1.23228 1.00459 0.85456 0.94125 1.87811 1.40174 1.36168 1.67357 1.22983 0.85955 0.99568 0.93620 1.21557 0.93593 0.88436 0.94405 0.94224 1.21182 0.96730 0.90835 0.89564 1.45944 1.11640 1.40394 1.35719 1.18303 0.83831 0.82219 0.81642 1.90512 1.28376 1.57242 1.69966 1.19860 0.94568 1.01359 1.00411 1.21829 0.96254 0.93911 0.94701 1.21245 1.01358 0.96903 0.96058 1.21666 0.89413 0.97193 0.97788 1.19345 0.97552 0.98708 0.98476 1.23866 0.85405 0.96223 0.96362 1.67488 1.28339 1.10978 1.15083 1.22555 0.99705 0.92936 0.91941 1.22830 0.92523 1.02275 1.02267 1.18204 0.93261 0.95101 0.94731 0.93875 0.97276 0.91483 0.87741 0.93971 0.86388 0.93332 0.89816 0.92997 0.75018 0.84964 0.81855 0.79794 0.77670 0.81297 0.82658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.35 11.09 21.65 0.24 -48.11 16 2 C -0.02 -1.10 5.08 84.86 0.43 -0.67 16 3 Si 0.93 42.45 29.57 68.60 2.03 44.48 16 4 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 5 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 6 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 7 C -0.24 -11.71 7.11 84.03 0.60 -11.12 16 8 H 0.06 3.14 5.82 -2.91 -0.02 3.13 16 9 N -0.61 -26.92 3.03 -673.72 -2.04 -28.96 16 10 C 0.15 6.60 5.37 86.35 0.46 7.06 16 11 C 0.05 1.63 6.99 72.08 0.50 2.13 16 12 O -0.40 -14.17 10.74 -148.98 -1.60 -15.78 16 13 C 0.06 1.84 6.29 72.08 0.45 2.29 16 14 C 0.13 4.65 3.20 44.97 0.14 4.79 16 15 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 16 C 0.14 4.98 4.44 86.38 0.38 5.36 16 17 N -0.69 -25.42 3.76 -466.34 -1.75 -27.17 16 18 C 0.55 20.98 7.73 86.67 0.67 21.65 16 19 O -0.58 -23.96 13.49 -4.03 -0.05 -24.01 16 20 C -0.16 -5.42 5.90 -19.92 -0.12 -5.54 16 21 C -0.05 -1.37 9.51 22.58 0.21 -1.15 16 22 C -0.14 -3.03 9.92 21.99 0.22 -2.81 16 23 C -0.04 -0.77 9.79 22.36 0.22 -0.55 16 24 C -0.14 -3.48 5.74 -21.33 -0.12 -3.60 16 25 C 0.15 3.30 11.05 85.32 0.94 4.25 16 26 N -0.51 -13.52 10.30 -195.39 -2.01 -15.53 16 27 C 0.07 1.98 11.07 84.14 0.93 2.91 16 28 C -0.18 -5.89 9.28 22.32 0.21 -5.68 16 29 C -0.01 -0.23 5.77 -21.11 -0.12 -0.35 16 30 H 0.25 13.02 8.31 -92.71 -0.77 12.25 16 31 H 0.01 0.43 8.14 -2.39 -0.02 0.42 16 32 H 0.07 3.32 6.31 -2.39 -0.02 3.30 16 33 H 0.10 3.25 8.14 -2.39 -0.02 3.23 16 34 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.12 3.00 8.14 -2.38 -0.02 2.98 16 36 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 38 H 0.05 2.03 7.52 -2.39 -0.02 2.01 16 39 H 0.41 15.66 5.46 -92.71 -0.51 15.16 16 40 H 0.13 3.92 6.43 -2.91 -0.02 3.90 16 41 H 0.16 2.58 8.06 -2.91 -0.02 2.55 16 42 H 0.18 1.64 8.06 -2.92 -0.02 1.61 16 43 H 0.21 2.42 8.06 -2.91 -0.02 2.39 16 44 H 0.17 3.85 8.06 -2.91 -0.02 3.83 16 45 H 0.16 5.66 5.06 -2.91 -0.01 5.64 16 Total: -1.00 -65.14 361.67 1.35 -63.79 By element: Atomic # 1 Polarization: 31.78 SS G_CDS: 0.53 Total: 32.31 kcal Atomic # 6 Polarization: 12.96 SS G_CDS: 6.02 Total: 18.98 kcal Atomic # 7 Polarization: -114.20 SS G_CDS: -5.57 Total: -119.77 kcal Atomic # 8 Polarization: -38.13 SS G_CDS: -1.65 Total: -39.79 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 2.03 Total: 44.48 kcal Total: -65.14 1.35 -63.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051246019.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.031 kcal (2) G-P(sol) polarization free energy of solvation -65.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds