Wall clock time and date at job start Tue Mar 31 2020 23:39:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86798 * 120.00077 * 2 1 4 4 H 1.48498 * 109.47324 * 274.98310 * 3 2 1 5 5 H 1.48498 * 109.47380 * 34.98588 * 3 2 1 6 6 H 1.48503 * 109.46878 * 154.98645 * 3 2 1 7 7 C 1.38816 * 119.99876 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00104 * 174.89787 * 7 2 1 9 9 N 1.36936 * 119.99828 * 354.89449 * 7 2 1 10 10 C 1.47676 * 134.45347 * 186.88596 * 9 7 2 11 11 C 1.53445 * 85.97620 * 204.26022 * 10 9 7 12 12 C 1.47663 * 134.45827 * 6.83969 * 9 7 2 13 13 C 1.52450 * 113.60516 * 222.53483 * 11 10 9 14 14 N 1.47346 * 108.28581 * 180.20512 * 13 11 10 15 15 C 1.34774 * 121.05317 * 228.32634 * 14 13 11 16 16 O 1.21585 * 119.99507 * 183.92475 * 15 14 13 17 17 C 1.47654 * 120.00148 * 3.92312 * 15 14 13 18 18 C 1.40215 * 119.96914 * 135.86935 * 17 15 14 19 19 C 1.36316 * 120.66514 * 179.97438 * 18 17 15 20 20 C 1.39371 * 120.24001 * 0.02562 * 19 18 17 21 21 N 1.37393 * 133.24749 * 180.02562 * 20 19 18 22 22 H 0.96994 * 125.01182 * 359.97438 * 21 20 19 23 23 C 1.36870 * 109.97570 * 179.97438 * 21 20 19 24 24 C 1.34183 * 109.96142 * 359.97438 * 23 21 20 25 25 C 1.40877 * 119.63625 * 359.96760 * 20 19 18 26 26 C 1.39147 * 119.97470 * 315.84963 * 17 15 14 27 27 C 1.47128 * 117.88755 * 48.04952 * 14 13 11 28 28 C 1.53225 * 108.72996 * 308.04711 * 27 14 13 29 29 O 1.42492 * 113.80834 * 91.24472 * 11 10 9 30 30 H 0.96997 * 119.99633 * 0.02562 * 1 2 3 31 31 H 1.09000 * 113.79200 * 89.99553 * 10 9 7 32 32 H 1.09002 * 113.89519 * 318.53673 * 10 9 7 33 33 H 1.09000 * 113.79327 * 41.47236 * 12 9 7 34 34 H 1.09002 * 113.79404 * 270.00766 * 12 9 7 35 35 H 1.08996 * 109.68625 * 60.46186 * 13 11 10 36 36 H 1.08994 * 109.57170 * 299.88048 * 13 11 10 37 37 H 1.08002 * 119.66713 * 359.72259 * 18 17 15 38 38 H 1.07997 * 119.87707 * 179.97438 * 19 18 17 39 39 H 1.07999 * 125.01529 * 180.02562 * 23 21 20 40 40 H 1.07999 * 126.54027 * 179.97438 * 24 23 21 41 41 H 1.08003 * 120.30268 * 359.97434 * 26 17 15 42 42 H 1.09001 * 109.59220 * 67.82245 * 27 14 13 43 43 H 1.09000 * 109.59544 * 188.27506 * 27 14 13 44 44 H 1.08993 * 109.49479 * 174.08677 * 28 27 14 45 45 H 1.09003 * 109.49197 * 294.14358 * 28 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3924 2.1072 -1.3947 5 1 1.5044 2.6200 0.8027 6 1 3.5965 1.4119 0.5920 7 6 2.0103 -1.2022 -0.0005 8 1 3.0871 -1.2041 -0.0837 9 7 1.3296 -2.3858 0.1045 10 6 1.7298 -3.7984 0.2629 11 6 0.3749 -4.1407 -0.3709 12 6 -0.0986 -2.7609 0.1055 13 6 -0.3452 -5.2965 0.3146 14 7 -1.6206 -5.5273 -0.3861 15 6 -2.7761 -5.6518 0.2963 16 8 -3.8060 -5.9128 -0.2949 17 6 -2.7913 -5.4714 1.7617 18 6 -3.8064 -4.7144 2.3637 19 6 -3.8345 -4.5391 3.7152 20 6 -2.8498 -5.1123 4.5179 21 7 -2.6210 -5.1109 5.8727 22 1 -3.1742 -4.6608 6.5300 23 6 -1.4973 -5.8384 6.1578 24 6 -0.9686 -6.3274 5.0256 25 6 -1.8246 -5.8752 3.9251 26 6 -1.7984 -6.0530 2.5440 27 6 -1.5936 -5.6112 -1.8548 28 6 -0.8670 -4.3794 -2.4047 29 8 0.4204 -4.2741 -1.7888 30 1 -0.4849 0.8400 -0.0004 31 1 1.8220 -4.1155 1.3016 32 1 2.5859 -4.0859 -0.3475 33 1 -0.6953 -2.2223 -0.6306 34 1 -0.5503 -2.7693 1.0975 35 1 -0.5383 -5.0423 1.3567 36 1 0.2716 -6.1936 0.2618 37 1 -4.5716 -4.2623 1.7500 38 1 -4.6221 -3.9532 4.1655 39 1 -1.0959 -5.9963 7.1480 40 1 -0.0813 -6.9373 4.9413 41 1 -1.0150 -6.6375 2.0846 42 1 -1.0644 -6.5141 -2.1596 43 1 -2.6135 -5.6356 -2.2384 44 1 -0.7470 -4.4793 -3.4834 45 1 -1.4500 -3.4850 -2.1849 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053401715.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:39:07 Heat of formation + Delta-G solvation = 65.583544 kcal Electronic energy + Delta-G solvation = -30415.774531 eV Core-core repulsion = 26401.706103 eV Total energy + Delta-G solvation = -4014.068429 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.41501 -40.33622 -38.76713 -36.66679 -35.95425 -34.50725 -32.32069 -32.08753 -30.50486 -29.39827 -28.87820 -27.74337 -26.00882 -25.07981 -23.89562 -23.17517 -22.16092 -21.48040 -20.90392 -19.33150 -18.83107 -18.12544 -17.22784 -16.79987 -16.41574 -16.09252 -15.58294 -15.16516 -14.89517 -14.54225 -14.46302 -14.35614 -14.07433 -13.91901 -13.71988 -13.39542 -13.21412 -13.16161 -12.73808 -12.66117 -12.42725 -12.28282 -12.05356 -11.46512 -11.30289 -11.12290 -11.00803 -10.84629 -10.79971 -10.58192 -10.23065 -9.97832 -9.86957 -9.62724 -9.49003 -9.22154 -8.78473 -8.34027 -8.15607 -7.83758 -6.84914 -5.74920 -3.06089 0.96987 1.29740 2.61109 2.84978 2.97195 3.10162 3.40954 3.45857 3.47981 3.86152 4.12167 4.46476 4.47365 4.64716 4.74030 4.98557 5.01714 5.14902 5.17725 5.21914 5.28579 5.30962 5.39733 5.47283 5.50549 5.59071 5.66085 5.76694 5.79299 5.81560 5.96709 5.99424 6.15645 6.24554 6.32322 6.37915 6.51106 6.52621 6.54067 6.58884 6.60092 6.98864 7.02163 7.20123 7.34670 7.49623 7.53949 7.85393 7.99594 8.28581 9.06193 9.72936 10.60330 11.42705 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.009493 B = 0.004265 C = 0.003429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2948.718292 B = 6563.895077 C = 8163.919853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.006 4.006 3 Si 0.909 3.091 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.219 4.219 8 H 0.081 0.919 9 N -0.602 5.602 10 C 0.136 3.864 11 C 0.048 3.952 12 C 0.156 3.844 13 C 0.081 3.919 14 N -0.603 5.603 15 C 0.570 3.430 16 O -0.546 6.546 17 C -0.151 4.151 18 C -0.044 4.044 19 C -0.134 4.134 20 C 0.115 3.885 21 N -0.595 5.595 22 H 0.416 0.584 23 C 0.045 3.955 24 C -0.194 4.194 25 C -0.118 4.118 26 C -0.035 4.035 27 C 0.080 3.920 28 C 0.048 3.952 29 O -0.343 6.343 30 H 0.253 0.747 31 H 0.049 0.951 32 H 0.055 0.945 33 H 0.071 0.929 34 H 0.034 0.966 35 H 0.107 0.893 36 H 0.073 0.927 37 H 0.133 0.867 38 H 0.125 0.875 39 H 0.171 0.829 40 H 0.149 0.851 41 H 0.132 0.868 42 H 0.073 0.927 43 H 0.098 0.902 44 H 0.101 0.899 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.423 -14.580 9.479 18.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.203 4.203 3 Si 0.739 3.261 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.347 4.347 8 H 0.099 0.901 9 N -0.328 5.328 10 C 0.009 3.991 11 C 0.006 3.994 12 C 0.030 3.970 13 C -0.043 4.043 14 N -0.335 5.335 15 C 0.360 3.640 16 O -0.424 6.424 17 C -0.155 4.155 18 C -0.064 4.064 19 C -0.154 4.154 20 C 0.006 3.994 21 N -0.197 5.197 22 H 0.252 0.748 23 C -0.080 4.080 24 C -0.219 4.219 25 C -0.123 4.123 26 C -0.054 4.054 27 C -0.042 4.042 28 C -0.030 4.030 29 O -0.261 6.261 30 H 0.063 0.937 31 H 0.067 0.933 32 H 0.074 0.926 33 H 0.089 0.911 34 H 0.051 0.949 35 H 0.125 0.875 36 H 0.091 0.909 37 H 0.151 0.849 38 H 0.143 0.857 39 H 0.188 0.812 40 H 0.167 0.833 41 H 0.150 0.850 42 H 0.091 0.909 43 H 0.116 0.884 44 H 0.119 0.881 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.792 -14.319 9.142 17.948 hybrid contribution 0.044 1.272 0.604 1.409 sum -5.748 -13.046 9.745 17.269 Atomic orbital electron populations 1.69837 1.05068 1.25281 1.56487 1.24797 0.95630 0.97465 1.02401 0.86144 0.78717 0.83668 0.77530 1.21609 1.21707 1.20581 1.18984 0.90737 0.81819 1.43130 0.90119 1.45730 1.01923 1.00568 1.84561 1.22494 0.93466 0.86571 0.96530 1.23621 0.99088 0.94668 0.81996 1.22596 0.88511 0.87843 0.98046 1.22734 0.83941 0.99106 0.98477 1.48041 1.07434 1.71027 1.07033 1.18235 0.82771 0.76138 0.86893 1.90746 1.32200 1.49101 1.70365 1.19501 0.98509 1.04837 0.92620 1.20465 0.96565 0.95829 0.93562 1.19654 0.99099 1.03873 0.92794 1.18401 0.97532 0.99878 0.83575 1.41769 1.25266 1.46752 1.05926 0.74777 1.21811 0.89047 0.97300 0.99881 1.21730 1.02388 1.07458 0.90308 1.19073 0.97325 1.02770 0.93116 1.20780 0.96051 0.97164 0.91433 1.22293 1.02962 0.99307 0.79662 1.22890 0.85848 0.96615 0.97656 1.87919 1.26502 1.93480 1.18173 0.93713 0.93330 0.92643 0.91085 0.94870 0.87533 0.90926 0.84891 0.85698 0.81215 0.83324 0.84982 0.90880 0.88364 0.88099 0.92155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.70 11.52 55.49 0.64 -27.06 16 2 C -0.01 -0.18 5.50 -17.43 -0.10 -0.28 16 3 Si 0.91 22.39 29.56 -169.99 -5.02 17.36 16 4 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.22 -6.23 10.69 -15.06 -0.16 -6.40 16 8 H 0.08 2.21 7.83 -52.49 -0.41 1.80 16 9 N -0.60 -15.64 3.70 -180.32 -0.67 -16.31 16 10 C 0.14 2.77 8.33 -3.18 -0.03 2.75 16 11 C 0.05 0.93 1.21 -90.53 -0.11 0.82 16 12 C 0.16 3.73 6.54 -3.17 -0.02 3.71 16 13 C 0.08 1.25 4.29 -3.86 -0.02 1.23 16 14 N -0.60 -9.53 3.03 -173.88 -0.53 -10.06 16 15 C 0.57 9.57 7.31 -12.42 -0.09 9.48 16 16 O -0.55 -10.41 16.45 5.29 0.09 -10.33 16 17 C -0.15 -2.28 5.21 -104.97 -0.55 -2.83 16 18 C -0.04 -0.63 9.58 -39.53 -0.38 -1.01 16 19 C -0.13 -1.64 10.00 -39.85 -0.40 -2.04 16 20 C 0.11 1.40 7.27 -83.95 -0.61 0.79 16 21 N -0.59 -5.38 6.05 -10.61 -0.06 -5.45 16 22 H 0.42 2.46 8.96 -40.82 -0.37 2.10 16 23 C 0.04 0.38 11.81 -16.73 -0.20 0.18 16 24 C -0.19 -2.01 11.09 -37.65 -0.42 -2.42 16 25 C -0.12 -1.53 6.36 -105.16 -0.67 -2.20 16 26 C -0.04 -0.47 7.39 -38.86 -0.29 -0.76 16 27 C 0.08 1.17 6.59 -3.58 -0.02 1.14 16 28 C 0.05 0.77 6.88 37.27 0.26 1.03 16 29 O -0.34 -6.72 10.52 -35.23 -0.37 -7.09 16 30 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 31 H 0.05 0.90 8.09 -51.93 -0.42 0.48 16 32 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.07 1.93 6.52 -51.93 -0.34 1.59 16 34 H 0.03 0.83 7.92 -51.93 -0.41 0.41 16 35 H 0.11 1.63 4.33 -51.93 -0.22 1.41 16 36 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.13 1.82 8.06 -52.49 -0.42 1.39 16 38 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 39 H 0.17 0.78 8.06 -52.49 -0.42 0.36 16 40 H 0.15 1.23 8.06 -52.49 -0.42 0.81 16 41 H 0.13 1.56 6.46 -52.48 -0.34 1.22 16 42 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.10 1.42 7.09 -51.93 -0.37 1.05 16 44 H 0.10 1.36 8.14 -51.93 -0.42 0.94 16 45 H 0.06 1.11 7.20 -51.93 -0.37 0.73 16 LS Contribution 365.73 15.07 5.51 5.51 Total: -1.00 -36.19 365.73 -9.98 -46.17 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: -5.77 Total: 4.04 kcal Atomic # 6 Polarization: 7.00 SS G_CDS: -3.79 Total: 3.20 kcal Atomic # 7 Polarization: -58.25 SS G_CDS: -0.62 Total: -58.87 kcal Atomic # 8 Polarization: -17.14 SS G_CDS: -0.28 Total: -17.42 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -36.19 -9.98 -46.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053401715.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.758 kcal (2) G-P(sol) polarization free energy of solvation -36.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.174 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds