Wall clock time and date at job start Tue Mar 31 2020 23:39:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86798 * 120.00077 * 2 1 4 4 H 1.48498 * 109.47324 * 274.98310 * 3 2 1 5 5 H 1.48498 * 109.47380 * 34.98588 * 3 2 1 6 6 H 1.48503 * 109.46878 * 154.98645 * 3 2 1 7 7 C 1.38816 * 119.99876 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00104 * 174.89787 * 7 2 1 9 9 N 1.36936 * 119.99828 * 354.89449 * 7 2 1 10 10 C 1.47676 * 134.45347 * 186.88596 * 9 7 2 11 11 C 1.53445 * 85.97620 * 204.26022 * 10 9 7 12 12 C 1.47663 * 134.45827 * 6.83969 * 9 7 2 13 13 C 1.52450 * 113.60516 * 222.53483 * 11 10 9 14 14 N 1.47346 * 108.28581 * 180.20512 * 13 11 10 15 15 C 1.34774 * 121.05317 * 228.32634 * 14 13 11 16 16 O 1.21585 * 119.99507 * 183.92475 * 15 14 13 17 17 C 1.47654 * 120.00148 * 3.92312 * 15 14 13 18 18 C 1.40215 * 119.96914 * 135.86935 * 17 15 14 19 19 C 1.36316 * 120.66514 * 179.97438 * 18 17 15 20 20 C 1.39371 * 120.24001 * 0.02562 * 19 18 17 21 21 N 1.37393 * 133.24749 * 180.02562 * 20 19 18 22 22 H 0.96994 * 125.01182 * 359.97438 * 21 20 19 23 23 C 1.36870 * 109.97570 * 179.97438 * 21 20 19 24 24 C 1.34183 * 109.96142 * 359.97438 * 23 21 20 25 25 C 1.40877 * 119.63625 * 359.96760 * 20 19 18 26 26 C 1.39147 * 119.97470 * 315.84963 * 17 15 14 27 27 C 1.47128 * 117.88755 * 48.04952 * 14 13 11 28 28 C 1.53225 * 108.72996 * 308.04711 * 27 14 13 29 29 O 1.42492 * 113.80834 * 91.24472 * 11 10 9 30 30 H 0.96997 * 119.99633 * 0.02562 * 1 2 3 31 31 H 1.09000 * 113.79200 * 89.99553 * 10 9 7 32 32 H 1.09002 * 113.89519 * 318.53673 * 10 9 7 33 33 H 1.09000 * 113.79327 * 41.47236 * 12 9 7 34 34 H 1.09002 * 113.79404 * 270.00766 * 12 9 7 35 35 H 1.08996 * 109.68625 * 60.46186 * 13 11 10 36 36 H 1.08994 * 109.57170 * 299.88048 * 13 11 10 37 37 H 1.08002 * 119.66713 * 359.72259 * 18 17 15 38 38 H 1.07997 * 119.87707 * 179.97438 * 19 18 17 39 39 H 1.07999 * 125.01529 * 180.02562 * 23 21 20 40 40 H 1.07999 * 126.54027 * 179.97438 * 24 23 21 41 41 H 1.08003 * 120.30268 * 359.97434 * 26 17 15 42 42 H 1.09001 * 109.59220 * 67.82245 * 27 14 13 43 43 H 1.09000 * 109.59544 * 188.27506 * 27 14 13 44 44 H 1.08993 * 109.49479 * 174.08677 * 28 27 14 45 45 H 1.09003 * 109.49197 * 294.14358 * 28 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3924 2.1072 -1.3947 5 1 1.5044 2.6200 0.8027 6 1 3.5965 1.4119 0.5920 7 6 2.0103 -1.2022 -0.0005 8 1 3.0871 -1.2041 -0.0837 9 7 1.3296 -2.3858 0.1045 10 6 1.7298 -3.7984 0.2629 11 6 0.3749 -4.1407 -0.3709 12 6 -0.0986 -2.7609 0.1055 13 6 -0.3452 -5.2965 0.3146 14 7 -1.6206 -5.5273 -0.3861 15 6 -2.7761 -5.6518 0.2963 16 8 -3.8060 -5.9128 -0.2949 17 6 -2.7913 -5.4714 1.7617 18 6 -3.8064 -4.7144 2.3637 19 6 -3.8345 -4.5391 3.7152 20 6 -2.8498 -5.1123 4.5179 21 7 -2.6210 -5.1109 5.8727 22 1 -3.1742 -4.6608 6.5300 23 6 -1.4973 -5.8384 6.1578 24 6 -0.9686 -6.3274 5.0256 25 6 -1.8246 -5.8752 3.9251 26 6 -1.7984 -6.0530 2.5440 27 6 -1.5936 -5.6112 -1.8548 28 6 -0.8670 -4.3794 -2.4047 29 8 0.4204 -4.2741 -1.7888 30 1 -0.4849 0.8400 -0.0004 31 1 1.8220 -4.1155 1.3016 32 1 2.5859 -4.0859 -0.3475 33 1 -0.6953 -2.2223 -0.6306 34 1 -0.5503 -2.7693 1.0975 35 1 -0.5383 -5.0423 1.3567 36 1 0.2716 -6.1936 0.2618 37 1 -4.5716 -4.2623 1.7500 38 1 -4.6221 -3.9532 4.1655 39 1 -1.0959 -5.9963 7.1480 40 1 -0.0813 -6.9373 4.9413 41 1 -1.0150 -6.6375 2.0846 42 1 -1.0644 -6.5141 -2.1596 43 1 -2.6135 -5.6356 -2.2384 44 1 -0.7470 -4.4793 -3.4834 45 1 -1.4500 -3.4850 -2.1849 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053401715.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:39:06 Heat of formation + Delta-G solvation = 40.726838 kcal Electronic energy + Delta-G solvation = -30416.852399 eV Core-core repulsion = 26401.706103 eV Total energy + Delta-G solvation = -4015.146296 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.33858 -41.64686 -40.20736 -37.83172 -37.41802 -35.86842 -34.27695 -33.08824 -31.78066 -30.68774 -29.74396 -29.26079 -27.70236 -26.83467 -25.07972 -24.49789 -23.54911 -22.73349 -21.72227 -20.73266 -20.16265 -19.05902 -18.79673 -18.37408 -17.72466 -17.23608 -17.00723 -16.80109 -16.33404 -15.97875 -15.72033 -15.44632 -15.34486 -15.16563 -14.92765 -14.79707 -14.75427 -14.24220 -14.00350 -13.86429 -13.59501 -13.49340 -13.34353 -13.15738 -12.88957 -12.78170 -12.55934 -12.41691 -12.13058 -11.95225 -11.89864 -11.71925 -11.43951 -10.95845 -10.93931 -10.80309 -10.68577 -9.60237 -9.20774 -8.91336 -8.68228 -7.91324 -5.23995 0.00283 0.30891 1.43973 1.45925 1.55221 1.59283 1.84900 1.91294 2.26292 2.46563 2.64105 2.85549 3.26705 3.37066 3.37825 3.66341 3.71805 3.78195 3.90247 3.95077 4.17461 4.22879 4.27567 4.31982 4.40028 4.49323 4.57091 4.62754 4.70313 4.74163 4.74914 4.79806 4.85056 4.94480 4.95276 5.09024 5.17574 5.22900 5.28749 5.30410 5.44909 5.47773 5.65286 5.78188 5.89869 6.10812 6.23554 6.32685 6.71050 6.89577 7.00882 7.60028 8.54079 9.26075 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.009493 B = 0.004265 C = 0.003429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2948.718292 B = 6563.895077 C = 8163.919853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C -0.068 4.068 3 Si 0.977 3.023 4 H -0.289 1.289 5 H -0.295 1.295 6 H -0.263 1.263 7 C -0.229 4.229 8 H 0.087 0.913 9 N -0.634 5.634 10 C 0.138 3.862 11 C 0.070 3.930 12 C 0.157 3.843 13 C 0.092 3.908 14 N -0.605 5.605 15 C 0.568 3.432 16 O -0.578 6.578 17 C -0.175 4.175 18 C -0.072 4.072 19 C -0.131 4.131 20 C 0.098 3.902 21 N -0.584 5.584 22 H 0.431 0.569 23 C 0.064 3.936 24 C -0.218 4.218 25 C -0.137 4.137 26 C -0.036 4.036 27 C 0.085 3.915 28 C 0.048 3.952 29 O -0.361 6.361 30 H 0.246 0.754 31 H 0.080 0.920 32 H 0.066 0.934 33 H 0.026 0.974 34 H 0.018 0.982 35 H 0.109 0.891 36 H 0.112 0.888 37 H 0.124 0.876 38 H 0.147 0.853 39 H 0.215 0.785 40 H 0.168 0.832 41 H 0.147 0.853 42 H 0.103 0.897 43 H 0.097 0.903 44 H 0.131 0.869 45 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.582 -16.300 11.491 20.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.605 5.605 2 C -0.261 4.261 3 Si 0.805 3.195 4 H -0.216 1.216 5 H -0.222 1.222 6 H -0.188 1.188 7 C -0.358 4.358 8 H 0.105 0.895 9 N -0.360 5.360 10 C 0.013 3.987 11 C 0.028 3.972 12 C 0.031 3.969 13 C -0.031 4.031 14 N -0.337 5.337 15 C 0.359 3.641 16 O -0.459 6.459 17 C -0.180 4.180 18 C -0.092 4.092 19 C -0.151 4.151 20 C -0.012 4.012 21 N -0.188 5.188 22 H 0.271 0.729 23 C -0.062 4.062 24 C -0.242 4.242 25 C -0.142 4.142 26 C -0.055 4.055 27 C -0.037 4.037 28 C -0.029 4.029 29 O -0.279 6.279 30 H 0.055 0.945 31 H 0.097 0.903 32 H 0.084 0.916 33 H 0.045 0.955 34 H 0.036 0.964 35 H 0.127 0.873 36 H 0.129 0.871 37 H 0.142 0.858 38 H 0.165 0.835 39 H 0.231 0.769 40 H 0.186 0.814 41 H 0.165 0.835 42 H 0.121 0.879 43 H 0.115 0.885 44 H 0.149 0.851 45 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -3.922 -16.068 11.174 19.961 hybrid contribution -0.517 1.783 0.054 1.857 sum -4.439 -14.285 11.228 18.704 Atomic orbital electron populations 1.70051 1.06670 1.25436 1.58337 1.25656 0.96456 1.00956 1.03030 0.85083 0.78011 0.79171 0.77237 1.21601 1.22189 1.18765 1.19421 0.91334 0.83203 1.41800 0.89482 1.46114 1.02988 1.02070 1.84877 1.22731 0.94288 0.83278 0.98366 1.23274 0.98166 0.93445 0.82317 1.22424 0.87394 0.90841 0.96194 1.22699 0.83726 0.98836 0.97862 1.48133 1.07399 1.70553 1.07598 1.18556 0.82431 0.75416 0.87708 1.90710 1.33199 1.50765 1.71226 1.19502 1.00013 1.06642 0.91795 1.20531 0.96933 0.97131 0.94610 1.19848 0.99649 1.03444 0.92161 1.18560 0.97487 1.00024 0.85127 1.41890 1.25583 1.46295 1.05019 0.72942 1.22551 0.87572 0.94783 1.01288 1.22076 1.03355 1.08838 0.89887 1.19491 0.98252 1.02999 0.93499 1.20902 0.95794 0.96928 0.91905 1.22340 1.03027 0.99378 0.78994 1.23041 0.84421 0.96161 0.99294 1.87880 1.28260 1.93450 1.18293 0.94507 0.90255 0.91586 0.95524 0.96412 0.87284 0.87054 0.85822 0.83506 0.76867 0.81433 0.83498 0.87902 0.88477 0.85082 0.95478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.96 11.52 21.65 0.25 -59.71 16 2 C -0.07 -4.01 5.50 84.86 0.47 -3.54 16 3 Si 0.98 46.76 29.56 68.60 2.03 48.78 16 4 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 5 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 6 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 7 C -0.23 -13.16 10.69 84.03 0.90 -12.26 16 8 H 0.09 4.73 7.83 -2.91 -0.02 4.71 16 9 N -0.63 -33.28 3.70 -729.30 -2.70 -35.98 16 10 C 0.14 5.43 8.33 86.30 0.72 6.15 16 11 C 0.07 2.65 1.21 -10.64 -0.01 2.64 16 12 C 0.16 7.84 6.54 86.31 0.56 8.40 16 13 C 0.09 2.68 4.29 86.04 0.37 3.05 16 14 N -0.61 -18.90 3.03 -822.29 -2.49 -21.39 16 15 C 0.57 19.54 7.31 86.73 0.63 20.18 16 16 O -0.58 -22.91 16.45 -3.98 -0.07 -22.98 16 17 C -0.18 -5.45 5.21 -20.09 -0.10 -5.55 16 18 C -0.07 -2.15 9.58 22.30 0.21 -1.93 16 19 C -0.13 -3.22 10.00 22.09 0.22 -3.00 16 20 C 0.10 2.27 7.27 39.19 0.28 2.55 16 21 N -0.58 -8.94 6.05 -187.48 -1.13 -10.07 16 22 H 0.43 3.80 8.96 -92.71 -0.83 2.97 16 23 C 0.06 0.82 11.81 82.98 0.98 1.80 16 24 C -0.22 -3.85 11.09 23.52 0.26 -3.59 16 25 C -0.14 -3.35 6.36 -20.21 -0.13 -3.48 16 26 C -0.04 -0.95 7.39 22.74 0.17 -0.79 16 27 C 0.08 2.39 6.59 86.33 0.57 2.96 16 28 C 0.05 1.56 6.88 72.06 0.50 2.05 16 29 O -0.36 -13.92 10.52 -148.98 -1.57 -15.49 16 30 H 0.25 15.03 8.31 -92.71 -0.77 14.26 16 31 H 0.08 2.68 8.09 -2.39 -0.02 2.66 16 32 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 33 H 0.03 1.54 6.52 -2.39 -0.02 1.53 16 34 H 0.02 0.94 7.92 -2.39 -0.02 0.92 16 35 H 0.11 3.21 4.33 -2.39 -0.01 3.20 16 36 H 0.11 2.49 8.14 -2.39 -0.02 2.47 16 37 H 0.12 3.73 8.06 -2.91 -0.02 3.71 16 38 H 0.15 2.77 8.06 -2.91 -0.02 2.74 16 39 H 0.21 0.79 8.06 -2.91 -0.02 0.77 16 40 H 0.17 2.20 8.06 -2.91 -0.02 2.17 16 41 H 0.15 3.21 6.46 -2.91 -0.02 3.19 16 42 H 0.10 2.35 8.14 -2.39 -0.02 2.33 16 43 H 0.10 2.80 7.09 -2.39 -0.02 2.78 16 44 H 0.13 3.40 8.14 -2.39 -0.02 3.38 16 45 H 0.03 1.05 7.20 -2.39 -0.02 1.04 16 Total: -1.00 -82.55 365.73 1.12 -81.42 By element: Atomic # 1 Polarization: 19.57 SS G_CDS: 0.21 Total: 19.78 kcal Atomic # 6 Polarization: 9.04 SS G_CDS: 6.60 Total: 15.64 kcal Atomic # 7 Polarization: -121.08 SS G_CDS: -6.08 Total: -127.15 kcal Atomic # 8 Polarization: -36.84 SS G_CDS: -1.63 Total: -38.47 kcal Atomic # 14 Polarization: 46.76 SS G_CDS: 2.03 Total: 48.78 kcal Total: -82.55 1.12 -81.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053401715.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.150 kcal (2) G-P(sol) polarization free energy of solvation -82.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.423 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds