Wall clock time and date at job start Tue Mar 31 2020 23:42:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86802 * 119.99680 * 2 1 4 4 H 1.48508 * 109.46997 * 274.99521 * 3 2 1 5 5 H 1.48497 * 109.47246 * 34.99599 * 3 2 1 6 6 H 1.48501 * 109.47197 * 154.99848 * 3 2 1 7 7 C 1.38808 * 120.00495 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00186 * 174.95875 * 7 2 1 9 9 N 1.36940 * 119.99709 * 354.95816 * 7 2 1 10 10 C 1.47677 * 134.45496 * 185.67570 * 9 7 2 11 11 C 1.53442 * 85.97603 * 204.25820 * 10 9 7 12 12 C 1.47663 * 134.45750 * 5.62669 * 9 7 2 13 13 C 1.52450 * 113.60776 * 222.53481 * 11 10 9 14 14 N 1.47339 * 108.28760 * 180.20535 * 13 11 10 15 15 C 1.34779 * 121.05493 * 228.32251 * 14 13 11 16 16 O 1.21592 * 119.99986 * 183.78153 * 15 14 13 17 17 C 1.47506 * 119.99925 * 3.78211 * 15 14 13 18 18 C 1.39341 * 120.20897 * 308.40880 * 17 15 14 19 19 C 1.38323 * 120.49990 * 179.97438 * 18 17 15 20 20 C 1.37906 * 120.58958 * 359.97438 * 19 18 17 21 21 C 1.39545 * 119.99099 * 0.02562 * 20 19 18 22 22 C 1.46562 * 133.95906 * 179.97438 * 21 20 19 23 23 C 1.34206 * 106.89682 * 180.02562 * 22 21 20 24 24 N 1.36902 * 109.87949 * 359.97438 * 23 22 21 25 25 H 0.97009 * 125.01355 * 180.02562 * 24 23 22 26 26 C 1.37119 * 109.97218 * 0.02562 * 24 23 22 27 27 C 1.47124 * 117.88899 * 48.05282 * 14 13 11 28 28 C 1.53223 * 108.72695 * 308.04367 * 27 14 13 29 29 O 1.42493 * 113.80712 * 91.24518 * 11 10 9 30 30 H 0.97000 * 120.00826 * 359.97438 * 1 2 3 31 31 H 1.08998 * 113.78949 * 89.99485 * 10 9 7 32 32 H 1.08996 * 113.89620 * 318.53435 * 10 9 7 33 33 H 1.08998 * 113.79483 * 41.47648 * 12 9 7 34 34 H 1.09002 * 113.79117 * 270.00677 * 12 9 7 35 35 H 1.09005 * 109.68691 * 60.45787 * 13 11 10 36 36 H 1.09000 * 109.56972 * 299.88758 * 13 11 10 37 37 H 1.08002 * 119.75059 * 359.70161 * 18 17 15 38 38 H 1.07996 * 119.70488 * 180.02562 * 19 18 17 39 39 H 1.07999 * 120.00602 * 180.02562 * 20 19 18 40 40 H 1.08007 * 126.55538 * 0.02562 * 22 21 20 41 41 H 1.08001 * 125.06417 * 180.02562 * 23 22 21 42 42 H 1.08996 * 109.59932 * 67.81885 * 27 14 13 43 43 H 1.09006 * 109.59575 * 188.27373 * 27 14 13 44 44 H 1.08997 * 109.49432 * 174.08984 * 28 27 14 45 45 H 1.08995 * 109.49349 * 294.14459 * 28 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3919 2.1074 -1.3948 5 1 1.5043 2.6199 0.8029 6 1 3.5965 1.4121 0.5917 7 6 2.0103 -1.2020 -0.0005 8 1 3.0871 -1.2038 -0.0827 9 7 1.3296 -2.3858 0.1032 10 6 1.7301 -3.8007 0.2390 11 6 0.3639 -4.1340 -0.3749 12 6 -0.0990 -2.7588 0.1249 13 6 -0.3461 -5.2962 0.3101 14 7 -1.6338 -5.5173 -0.3709 15 6 -2.7776 -5.6478 0.3300 16 8 -3.8186 -5.8982 -0.2463 17 6 -2.7665 -5.4869 1.7962 18 6 -1.8583 -6.2030 2.5733 19 6 -1.8423 -6.0563 3.9486 20 6 -2.7238 -5.1993 4.5733 21 6 -3.6430 -4.4710 3.8170 22 6 -4.6910 -3.5012 4.1474 23 6 -5.2599 -3.1320 2.9893 24 7 -4.6605 -3.7862 1.9467 25 1 -4.9005 -3.6822 1.0126 26 6 -3.6709 -4.6102 2.4178 27 6 -1.6323 -5.5852 -1.8406 28 6 -0.9134 -4.3484 -2.3894 29 8 0.3847 -4.2518 -1.7948 30 1 -0.4851 0.8400 0.0004 31 1 1.8397 -4.1293 1.2725 32 1 2.5750 -4.0826 -0.3892 33 1 -0.7075 -2.2113 -0.5949 34 1 -0.5334 -2.7776 1.1244 35 1 -0.5208 -5.0533 1.3583 36 1 0.2682 -6.1936 0.2369 37 1 -1.1644 -6.8810 2.0986 38 1 -1.1326 -6.6173 4.5384 39 1 -2.7028 -5.0917 5.6477 40 1 -4.9550 -3.1506 5.1342 41 1 -6.0694 -2.4235 2.8938 42 1 -1.1101 -6.4853 -2.1645 43 1 -2.6589 -5.6038 -2.2067 44 1 -0.8123 -4.4365 -3.4711 45 1 -1.4910 -3.4556 -2.1496 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053440351.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:42:34 Heat of formation + Delta-G solvation = 60.680716 kcal Electronic energy + Delta-G solvation = -30768.439466 eV Core-core repulsion = 26754.158435 eV Total energy + Delta-G solvation = -4014.281031 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.42794 -40.26155 -38.69643 -36.81755 -36.08423 -34.52047 -32.37369 -32.04066 -30.15367 -29.50318 -28.81599 -27.82007 -26.04571 -25.14740 -24.16901 -22.92263 -21.89348 -21.72650 -20.87079 -19.54752 -18.86346 -17.84211 -17.19186 -16.84516 -16.39967 -16.03774 -15.63279 -15.24054 -15.02369 -14.80370 -14.43635 -14.36281 -14.16262 -13.94794 -13.74084 -13.38513 -13.29503 -13.07512 -12.70011 -12.59022 -12.37984 -12.13649 -11.84135 -11.50599 -11.42280 -11.34249 -11.17733 -10.88332 -10.84974 -10.66060 -10.27429 -10.03333 -9.80948 -9.63251 -9.54636 -9.29107 -8.82910 -8.30381 -8.23664 -7.73918 -6.89344 -5.78207 -3.09583 0.82590 1.61575 2.51253 2.77846 3.04054 3.17155 3.38866 3.43896 3.45987 3.85883 4.04831 4.43248 4.43531 4.70638 4.92007 4.93709 4.96592 5.10151 5.14070 5.19391 5.21916 5.30955 5.38625 5.45000 5.51864 5.53962 5.68621 5.73006 5.75414 5.87589 5.90145 5.93169 6.06831 6.27390 6.28388 6.43356 6.46623 6.47290 6.49056 6.64916 6.70481 6.95705 7.08813 7.14207 7.35912 7.48413 7.51824 7.78713 7.95587 8.12868 9.02455 9.69581 10.55949 11.39195 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.010137 B = 0.004436 C = 0.003720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2761.380008 B = 6310.546963 C = 7525.263029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.007 4.007 3 Si 0.910 3.090 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.219 4.219 8 H 0.082 0.918 9 N -0.601 5.601 10 C 0.136 3.864 11 C 0.048 3.952 12 C 0.155 3.845 13 C 0.085 3.915 14 N -0.600 5.600 15 C 0.567 3.433 16 O -0.550 6.550 17 C -0.137 4.137 18 C -0.066 4.066 19 C -0.154 4.154 20 C -0.048 4.048 21 C -0.114 4.114 22 C -0.204 4.204 23 C 0.055 3.945 24 N -0.585 5.585 25 H 0.420 0.580 26 C 0.145 3.855 27 C 0.079 3.921 28 C 0.048 3.952 29 O -0.342 6.342 30 H 0.252 0.748 31 H 0.050 0.950 32 H 0.056 0.944 33 H 0.071 0.929 34 H 0.032 0.968 35 H 0.104 0.896 36 H 0.074 0.926 37 H 0.130 0.870 38 H 0.129 0.871 39 H 0.126 0.874 40 H 0.149 0.851 41 H 0.172 0.828 42 H 0.075 0.925 43 H 0.097 0.903 44 H 0.102 0.898 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.758 -12.843 5.520 15.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.203 4.203 3 Si 0.740 3.260 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.205 1.205 7 C -0.347 4.347 8 H 0.099 0.901 9 N -0.327 5.327 10 C 0.010 3.990 11 C 0.006 3.994 12 C 0.030 3.970 13 C -0.039 4.039 14 N -0.332 5.332 15 C 0.356 3.644 16 O -0.429 6.429 17 C -0.143 4.143 18 C -0.086 4.086 19 C -0.174 4.174 20 C -0.067 4.067 21 C -0.119 4.119 22 C -0.229 4.229 23 C -0.071 4.071 24 N -0.186 5.186 25 H 0.257 0.743 26 C 0.034 3.966 27 C -0.044 4.044 28 C -0.029 4.029 29 O -0.260 6.260 30 H 0.062 0.938 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.089 0.911 34 H 0.050 0.950 35 H 0.122 0.878 36 H 0.092 0.908 37 H 0.148 0.852 38 H 0.147 0.853 39 H 0.144 0.856 40 H 0.166 0.834 41 H 0.189 0.811 42 H 0.093 0.907 43 H 0.115 0.885 44 H 0.120 0.880 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -8.157 -12.564 4.949 15.776 hybrid contribution 0.119 1.116 -0.262 1.152 sum -8.038 -11.447 4.688 14.752 Atomic orbital electron populations 1.69829 1.05094 1.25263 1.56549 1.24787 0.95643 0.97512 1.02386 0.86130 0.78743 0.83582 0.77514 1.21625 1.21671 1.20528 1.18988 0.90729 0.81793 1.43148 0.90055 1.45727 1.01808 1.00341 1.84853 1.22494 0.93256 0.86559 0.96715 1.23631 0.99230 0.94618 0.81934 1.22595 0.88665 0.87969 0.97801 1.22600 0.83428 0.99218 0.98625 1.48081 1.07537 1.70641 1.06923 1.18311 0.83053 0.76138 0.86899 1.90748 1.31196 1.49499 1.71460 1.18680 1.00214 1.03037 0.92395 1.20989 0.95860 0.97812 0.93937 1.20758 1.01086 1.01516 0.94000 1.20658 0.92859 0.93765 0.99395 1.19178 0.99853 1.01306 0.91545 1.21667 1.00031 1.03107 0.98072 1.21892 0.99720 0.98990 0.86498 1.41781 1.30107 1.36986 1.09752 0.74277 1.17850 0.91495 0.94217 0.92988 1.22319 1.02994 0.99496 0.79541 1.22879 0.85663 0.96402 0.98002 1.87930 1.26091 1.93629 1.18308 0.93757 0.93223 0.92571 0.91102 0.95012 0.87781 0.90808 0.85200 0.85292 0.85621 0.83379 0.81102 0.90721 0.88455 0.88026 0.92303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.52 11.49 55.49 0.64 -26.88 16 2 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 3 Si 0.91 22.30 29.56 -169.99 -5.02 17.27 16 4 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.22 -6.19 10.70 -15.06 -0.16 -6.35 16 8 H 0.08 2.21 7.83 -52.49 -0.41 1.80 16 9 N -0.60 -15.49 3.70 -180.34 -0.67 -16.16 16 10 C 0.14 2.75 8.33 -3.18 -0.03 2.72 16 11 C 0.05 0.91 1.21 -90.53 -0.11 0.80 16 12 C 0.16 3.69 6.57 -3.17 -0.02 3.67 16 13 C 0.08 1.28 4.59 -3.86 -0.02 1.26 16 14 N -0.60 -9.21 3.03 -173.94 -0.53 -9.73 16 15 C 0.57 9.26 7.23 -12.48 -0.09 9.17 16 16 O -0.55 -10.06 16.54 5.29 0.09 -9.97 16 17 C -0.14 -2.09 4.95 -104.88 -0.52 -2.61 16 18 C -0.07 -0.84 7.42 -39.14 -0.29 -1.13 16 19 C -0.15 -1.74 10.00 -39.67 -0.40 -2.14 16 20 C -0.05 -0.58 10.09 -39.22 -0.40 -0.97 16 21 C -0.11 -1.60 6.37 -105.15 -0.67 -2.27 16 22 C -0.20 -2.46 11.09 -37.65 -0.42 -2.88 16 23 C 0.06 0.64 11.82 -16.71 -0.20 0.44 16 24 N -0.58 -8.10 6.04 -10.45 -0.06 -8.17 16 25 H 0.42 5.55 8.96 -40.82 -0.37 5.18 16 26 C 0.14 2.23 6.97 -83.76 -0.58 1.64 16 27 C 0.08 1.11 6.59 -3.59 -0.02 1.09 16 28 C 0.05 0.76 6.88 37.27 0.26 1.02 16 29 O -0.34 -6.60 10.52 -35.23 -0.37 -6.97 16 30 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 31 H 0.05 0.90 8.09 -51.93 -0.42 0.48 16 32 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.07 1.91 6.47 -51.93 -0.34 1.57 16 34 H 0.03 0.79 7.92 -51.93 -0.41 0.38 16 35 H 0.10 1.56 4.77 -51.93 -0.25 1.31 16 36 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.13 1.38 7.19 -52.49 -0.38 1.00 16 38 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 39 H 0.13 1.17 8.06 -52.49 -0.42 0.74 16 40 H 0.15 1.39 8.06 -52.48 -0.42 0.97 16 41 H 0.17 1.33 8.06 -52.49 -0.42 0.90 16 42 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 43 H 0.10 1.35 7.09 -51.93 -0.37 0.98 16 44 H 0.10 1.33 8.14 -51.93 -0.42 0.91 16 45 H 0.06 1.06 7.20 -51.93 -0.37 0.68 16 LS Contribution 367.12 15.07 5.53 5.53 Total: -1.00 -35.34 367.12 -9.98 -45.32 By element: Atomic # 1 Polarization: 12.42 SS G_CDS: -5.83 Total: 6.59 kcal Atomic # 6 Polarization: 6.93 SS G_CDS: -3.76 Total: 3.17 kcal Atomic # 7 Polarization: -60.33 SS G_CDS: -0.62 Total: -60.95 kcal Atomic # 8 Polarization: -16.66 SS G_CDS: -0.28 Total: -16.94 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -35.34 -9.98 -45.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053440351.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.002 kcal (2) G-P(sol) polarization free energy of solvation -35.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.322 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds