Wall clock time and date at job start Tue Mar 31 2020 23:42:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86802 * 119.99680 * 2 1 4 4 H 1.48508 * 109.46997 * 274.99521 * 3 2 1 5 5 H 1.48497 * 109.47246 * 34.99599 * 3 2 1 6 6 H 1.48501 * 109.47197 * 154.99848 * 3 2 1 7 7 C 1.38808 * 120.00495 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00186 * 174.95875 * 7 2 1 9 9 N 1.36940 * 119.99709 * 354.95816 * 7 2 1 10 10 C 1.47677 * 134.45496 * 185.67570 * 9 7 2 11 11 C 1.53442 * 85.97603 * 204.25820 * 10 9 7 12 12 C 1.47663 * 134.45750 * 5.62669 * 9 7 2 13 13 C 1.52450 * 113.60776 * 222.53481 * 11 10 9 14 14 N 1.47339 * 108.28760 * 180.20535 * 13 11 10 15 15 C 1.34779 * 121.05493 * 228.32251 * 14 13 11 16 16 O 1.21592 * 119.99986 * 183.78153 * 15 14 13 17 17 C 1.47506 * 119.99925 * 3.78211 * 15 14 13 18 18 C 1.39341 * 120.20897 * 308.40880 * 17 15 14 19 19 C 1.38323 * 120.49990 * 179.97438 * 18 17 15 20 20 C 1.37906 * 120.58958 * 359.97438 * 19 18 17 21 21 C 1.39545 * 119.99099 * 0.02562 * 20 19 18 22 22 C 1.46562 * 133.95906 * 179.97438 * 21 20 19 23 23 C 1.34206 * 106.89682 * 180.02562 * 22 21 20 24 24 N 1.36902 * 109.87949 * 359.97438 * 23 22 21 25 25 H 0.97009 * 125.01355 * 180.02562 * 24 23 22 26 26 C 1.37119 * 109.97218 * 0.02562 * 24 23 22 27 27 C 1.47124 * 117.88899 * 48.05282 * 14 13 11 28 28 C 1.53223 * 108.72695 * 308.04367 * 27 14 13 29 29 O 1.42493 * 113.80712 * 91.24518 * 11 10 9 30 30 H 0.97000 * 120.00826 * 359.97438 * 1 2 3 31 31 H 1.08998 * 113.78949 * 89.99485 * 10 9 7 32 32 H 1.08996 * 113.89620 * 318.53435 * 10 9 7 33 33 H 1.08998 * 113.79483 * 41.47648 * 12 9 7 34 34 H 1.09002 * 113.79117 * 270.00677 * 12 9 7 35 35 H 1.09005 * 109.68691 * 60.45787 * 13 11 10 36 36 H 1.09000 * 109.56972 * 299.88758 * 13 11 10 37 37 H 1.08002 * 119.75059 * 359.70161 * 18 17 15 38 38 H 1.07996 * 119.70488 * 180.02562 * 19 18 17 39 39 H 1.07999 * 120.00602 * 180.02562 * 20 19 18 40 40 H 1.08007 * 126.55538 * 0.02562 * 22 21 20 41 41 H 1.08001 * 125.06417 * 180.02562 * 23 22 21 42 42 H 1.08996 * 109.59932 * 67.81885 * 27 14 13 43 43 H 1.09006 * 109.59575 * 188.27373 * 27 14 13 44 44 H 1.08997 * 109.49432 * 174.08984 * 28 27 14 45 45 H 1.08995 * 109.49349 * 294.14459 * 28 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3919 2.1074 -1.3948 5 1 1.5043 2.6199 0.8029 6 1 3.5965 1.4121 0.5917 7 6 2.0103 -1.2020 -0.0005 8 1 3.0871 -1.2038 -0.0827 9 7 1.3296 -2.3858 0.1032 10 6 1.7301 -3.8007 0.2390 11 6 0.3639 -4.1340 -0.3749 12 6 -0.0990 -2.7588 0.1249 13 6 -0.3461 -5.2962 0.3101 14 7 -1.6338 -5.5173 -0.3709 15 6 -2.7776 -5.6478 0.3300 16 8 -3.8186 -5.8982 -0.2463 17 6 -2.7665 -5.4869 1.7962 18 6 -1.8583 -6.2030 2.5733 19 6 -1.8423 -6.0563 3.9486 20 6 -2.7238 -5.1993 4.5733 21 6 -3.6430 -4.4710 3.8170 22 6 -4.6910 -3.5012 4.1474 23 6 -5.2599 -3.1320 2.9893 24 7 -4.6605 -3.7862 1.9467 25 1 -4.9005 -3.6822 1.0126 26 6 -3.6709 -4.6102 2.4178 27 6 -1.6323 -5.5852 -1.8406 28 6 -0.9134 -4.3484 -2.3894 29 8 0.3847 -4.2518 -1.7948 30 1 -0.4851 0.8400 0.0004 31 1 1.8397 -4.1293 1.2725 32 1 2.5750 -4.0826 -0.3892 33 1 -0.7075 -2.2113 -0.5949 34 1 -0.5334 -2.7776 1.1244 35 1 -0.5208 -5.0533 1.3583 36 1 0.2682 -6.1936 0.2369 37 1 -1.1644 -6.8810 2.0986 38 1 -1.1326 -6.6173 4.5384 39 1 -2.7028 -5.0917 5.6477 40 1 -4.9550 -3.1506 5.1342 41 1 -6.0694 -2.4235 2.8938 42 1 -1.1101 -6.4853 -2.1645 43 1 -2.6589 -5.6038 -2.2067 44 1 -0.8123 -4.4365 -3.4711 45 1 -1.4910 -3.4556 -2.1496 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053440351.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:42:33 Heat of formation + Delta-G solvation = 36.693559 kcal Electronic energy + Delta-G solvation = -30769.479627 eV Core-core repulsion = 26754.158435 eV Total energy + Delta-G solvation = -4015.321192 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.45201 -41.58717 -40.09756 -37.82093 -37.63516 -35.84149 -34.30391 -33.15124 -31.55300 -30.54110 -29.90262 -29.25855 -27.72227 -26.87113 -25.33106 -24.39806 -23.29962 -22.75739 -21.90785 -20.81788 -20.29859 -18.99631 -18.75264 -18.31690 -17.67388 -17.24865 -16.98859 -16.76405 -16.37141 -16.09679 -15.76453 -15.68140 -15.39757 -15.15393 -15.07092 -14.84371 -14.80585 -14.18818 -14.08261 -13.82116 -13.63782 -13.37750 -13.20531 -12.91636 -12.80274 -12.76869 -12.57688 -12.43230 -12.35111 -12.13837 -11.97536 -11.73713 -11.45421 -10.99099 -10.96825 -10.83817 -10.65186 -9.63786 -9.21033 -8.94011 -8.69539 -7.93224 -5.25903 -0.15046 0.65522 1.39242 1.42848 1.44631 1.53948 1.69645 1.94427 2.22492 2.44791 2.60569 2.88947 3.24038 3.31750 3.34804 3.65919 3.69764 3.81149 3.87381 4.05067 4.07201 4.15295 4.23531 4.33345 4.43584 4.48075 4.53688 4.60554 4.65331 4.71890 4.74497 4.80566 4.85861 4.91545 4.96291 5.02940 5.13623 5.19592 5.26679 5.38171 5.44903 5.55465 5.76340 5.78461 5.87431 6.14059 6.16253 6.28831 6.53672 6.87261 6.90639 7.58107 8.51351 9.23740 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.010137 B = 0.004436 C = 0.003720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2761.380008 B = 6310.546963 C = 7525.263029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.069 4.069 3 Si 0.977 3.023 4 H -0.289 1.289 5 H -0.295 1.295 6 H -0.263 1.263 7 C -0.229 4.229 8 H 0.088 0.912 9 N -0.634 5.634 10 C 0.138 3.862 11 C 0.070 3.930 12 C 0.158 3.842 13 C 0.095 3.905 14 N -0.602 5.602 15 C 0.566 3.434 16 O -0.579 6.579 17 C -0.168 4.168 18 C -0.065 4.065 19 C -0.152 4.152 20 C -0.051 4.051 21 C -0.138 4.138 22 C -0.214 4.214 23 C 0.047 3.953 24 N -0.597 5.597 25 H 0.416 0.584 26 C 0.110 3.890 27 C 0.084 3.916 28 C 0.049 3.951 29 O -0.360 6.360 30 H 0.245 0.755 31 H 0.082 0.918 32 H 0.066 0.934 33 H 0.026 0.974 34 H 0.015 0.985 35 H 0.107 0.893 36 H 0.114 0.886 37 H 0.153 0.847 38 H 0.165 0.835 39 H 0.154 0.846 40 H 0.174 0.826 41 H 0.204 0.796 42 H 0.104 0.896 43 H 0.097 0.903 44 H 0.131 0.869 45 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.227 -14.633 6.763 17.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.262 4.262 3 Si 0.805 3.195 4 H -0.216 1.216 5 H -0.222 1.222 6 H -0.188 1.188 7 C -0.357 4.357 8 H 0.106 0.894 9 N -0.360 5.360 10 C 0.013 3.987 11 C 0.028 3.972 12 C 0.032 3.968 13 C -0.028 4.028 14 N -0.333 5.333 15 C 0.357 3.643 16 O -0.460 6.460 17 C -0.174 4.174 18 C -0.084 4.084 19 C -0.171 4.171 20 C -0.069 4.069 21 C -0.143 4.143 22 C -0.238 4.238 23 C -0.078 4.078 24 N -0.199 5.199 25 H 0.253 0.747 26 C 0.000 4.000 27 C -0.038 4.038 28 C -0.029 4.029 29 O -0.278 6.278 30 H 0.054 0.946 31 H 0.100 0.900 32 H 0.084 0.916 33 H 0.044 0.956 34 H 0.032 0.968 35 H 0.125 0.875 36 H 0.132 0.868 37 H 0.170 0.830 38 H 0.183 0.817 39 H 0.171 0.829 40 H 0.191 0.809 41 H 0.221 0.779 42 H 0.122 0.878 43 H 0.115 0.885 44 H 0.149 0.851 45 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -6.592 -14.393 6.200 17.002 hybrid contribution -0.356 1.653 -0.654 1.813 sum -6.947 -12.740 5.546 15.535 Atomic orbital electron populations 1.70044 1.06639 1.25353 1.58398 1.25645 0.96480 1.00972 1.03087 0.85083 0.78037 0.79167 0.77216 1.21606 1.22215 1.18752 1.19420 0.91322 0.83198 1.41743 0.89438 1.46117 1.02923 1.01879 1.85126 1.22750 0.94114 0.83225 0.98616 1.23272 0.98269 0.93426 0.82220 1.22405 0.87458 0.90996 0.95909 1.22558 0.83291 0.98902 0.98028 1.48158 1.07484 1.70251 1.07422 1.18571 0.82713 0.75458 0.87590 1.90716 1.32108 1.50953 1.72221 1.18833 1.01925 1.04754 0.91857 1.21342 0.95234 0.97202 0.94622 1.21198 1.01139 1.01057 0.93714 1.21111 0.92027 0.92970 1.00821 1.19659 1.01020 1.02301 0.91329 1.22078 0.99610 1.02793 0.99320 1.22533 1.00237 0.99079 0.85940 1.41971 1.30408 1.37409 1.10071 0.74731 1.18285 0.92381 0.95233 0.94132 1.22352 1.03061 0.99443 0.78927 1.23028 0.84184 0.96030 0.99610 1.87890 1.27912 1.93615 1.18432 0.94597 0.90019 0.91555 0.95578 0.96750 0.87483 0.86786 0.82981 0.81742 0.82879 0.80894 0.77922 0.87791 0.88507 0.85115 0.95649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.48 11.49 21.65 0.25 -59.23 16 2 C -0.07 -4.04 5.50 84.86 0.47 -3.57 16 3 Si 0.98 46.59 29.56 68.60 2.03 48.61 16 4 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 5 H -0.30 -14.19 7.11 99.48 0.71 -13.49 16 6 H -0.26 -11.68 7.11 99.48 0.71 -10.98 16 7 C -0.23 -13.02 10.70 84.03 0.90 -12.13 16 8 H 0.09 4.72 7.83 -2.91 -0.02 4.70 16 9 N -0.63 -32.91 3.70 -729.34 -2.70 -35.61 16 10 C 0.14 5.30 8.33 86.30 0.72 6.02 16 11 C 0.07 2.59 1.21 -10.64 -0.01 2.58 16 12 C 0.16 7.77 6.57 86.31 0.57 8.34 16 13 C 0.10 2.66 4.59 86.04 0.39 3.05 16 14 N -0.60 -17.86 3.03 -822.47 -2.49 -20.36 16 15 C 0.57 18.54 7.23 86.69 0.63 19.17 16 16 O -0.58 -21.67 16.54 -4.00 -0.07 -21.74 16 17 C -0.17 -5.08 4.95 -20.03 -0.10 -5.18 16 18 C -0.06 -1.50 7.42 22.56 0.17 -1.33 16 19 C -0.15 -3.00 10.00 22.21 0.22 -2.78 16 20 C -0.05 -1.12 10.09 22.51 0.23 -0.89 16 21 C -0.14 -3.81 6.37 -20.21 -0.13 -3.94 16 22 C -0.21 -5.05 11.09 23.52 0.26 -4.79 16 23 C 0.05 1.10 11.82 82.98 0.98 2.08 16 24 N -0.60 -17.38 6.04 -186.99 -1.13 -18.51 16 25 H 0.42 11.96 8.96 -92.70 -0.83 11.13 16 26 C 0.11 3.46 6.97 39.44 0.27 3.73 16 27 C 0.08 2.27 6.59 86.34 0.57 2.84 16 28 C 0.05 1.53 6.88 72.06 0.50 2.03 16 29 O -0.36 -13.61 10.52 -148.98 -1.57 -15.18 16 30 H 0.25 14.90 8.31 -92.71 -0.77 14.13 16 31 H 0.08 2.68 8.09 -2.39 -0.02 2.66 16 32 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 33 H 0.03 1.49 6.47 -2.39 -0.02 1.48 16 34 H 0.01 0.76 7.92 -2.39 -0.02 0.74 16 35 H 0.11 2.98 4.77 -2.38 -0.01 2.97 16 36 H 0.11 2.37 8.14 -2.39 -0.02 2.35 16 37 H 0.15 2.70 7.19 -2.91 -0.02 2.68 16 38 H 0.17 2.01 8.06 -2.91 -0.02 1.99 16 39 H 0.15 2.39 8.06 -2.91 -0.02 2.36 16 40 H 0.17 2.99 8.06 -2.91 -0.02 2.97 16 41 H 0.20 3.04 8.06 -2.91 -0.02 3.01 16 42 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 43 H 0.10 2.65 7.09 -2.38 -0.02 2.63 16 44 H 0.13 3.29 8.14 -2.39 -0.02 3.27 16 45 H 0.03 0.96 7.20 -2.39 -0.02 0.95 16 Total: -1.00 -80.67 367.12 1.15 -79.51 By element: Atomic # 1 Polarization: 27.06 SS G_CDS: 0.20 Total: 27.27 kcal Atomic # 6 Polarization: 8.60 SS G_CDS: 6.63 Total: 15.23 kcal Atomic # 7 Polarization: -127.63 SS G_CDS: -6.07 Total: -133.71 kcal Atomic # 8 Polarization: -35.28 SS G_CDS: -1.63 Total: -36.91 kcal Atomic # 14 Polarization: 46.59 SS G_CDS: 2.03 Total: 48.61 kcal Total: -80.67 1.15 -79.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053440351.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.206 kcal (2) G-P(sol) polarization free energy of solvation -80.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.512 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds