Wall clock time and date at job start Wed Apr 1 2020 00:12:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86791 * 120.00094 * 2 1 4 4 H 1.48503 * 109.47477 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47288 * 300.00239 * 3 2 1 6 6 H 1.48504 * 109.47150 * 60.00322 * 3 2 1 7 7 C 1.38811 * 119.99909 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00320 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00086 * 359.97438 * 7 2 1 10 10 C 1.47427 * 125.65152 * 180.02562 * 9 7 2 11 11 C 1.54912 * 104.83496 * 204.15358 * 10 9 7 12 12 H 1.08995 * 111.03716 * 81.07658 * 11 10 9 13 13 N 1.46497 * 111.00281 * 204.91817 * 11 10 9 14 14 C 1.34778 * 119.99482 * 267.19482 * 13 11 10 15 15 O 1.21727 * 120.00462 * 0.02562 * 14 13 11 16 16 C 1.46397 * 119.99715 * 180.02562 * 14 13 11 17 17 N 1.37631 * 126.32885 * 359.97438 * 16 14 13 18 18 H 0.97007 * 125.55233 * 0.03682 * 17 16 14 19 19 C 1.35644 * 108.89983 * 179.74073 * 17 16 14 20 20 C 1.35116 * 109.22251 * 0.43953 * 19 17 16 21 21 C 1.39102 * 126.32795 * 179.97438 * 16 14 13 22 22 C 1.48170 * 126.63303 * 0.02562 * 21 16 14 23 23 C 1.39447 * 120.13105 * 309.72256 * 22 21 16 24 24 C 1.37995 * 119.86586 * 179.78761 * 23 22 21 25 25 C 1.38341 * 120.12949 * 0.47202 * 24 23 22 26 26 C 1.38339 * 120.26976 * 359.77933 * 25 24 23 27 27 C 1.37992 * 120.12882 * 359.97438 * 26 25 24 28 28 C 1.55158 * 101.57978 * 322.99195 * 11 10 9 29 29 H 1.08993 * 110.71885 * 153.87001 * 28 11 10 30 30 O 1.42904 * 110.71559 * 276.96274 * 28 11 10 31 31 C 1.47022 * 125.64915 * 0.02979 * 9 7 2 32 32 H 0.96999 * 119.99816 * 359.97438 * 1 2 3 33 33 H 1.08997 * 110.36642 * 85.31346 * 10 9 7 34 34 H 1.09003 * 110.36495 * 322.99091 * 10 9 7 35 35 H 0.96998 * 120.00553 * 87.19303 * 13 11 10 36 36 H 1.08001 * 125.38573 * 180.29509 * 19 17 16 37 37 H 1.08002 * 126.10367 * 179.83590 * 20 19 17 38 38 H 1.08001 * 120.06739 * 0.02562 * 23 22 21 39 39 H 1.07995 * 119.93524 * 180.23006 * 24 23 22 40 40 H 1.08005 * 119.86861 * 179.76479 * 25 24 23 41 41 H 1.07996 * 119.93977 * 179.97438 * 26 25 24 42 42 H 1.08007 * 120.06574 * 180.02562 * 27 26 25 43 43 H 0.96700 * 113.99728 * 180.02562 * 30 28 11 44 44 H 1.09000 * 109.88323 * 59.49946 * 31 9 7 45 45 H 1.08999 * 109.88455 * 298.33863 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8915 2.3963 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3880 -0.0005 10 6 1.9333 -3.7312 -0.0005 11 6 0.8520 -4.6559 -0.6133 12 1 0.8571 -4.5961 -1.7016 13 7 1.0290 -6.0394 -0.1653 14 6 1.7595 -6.8984 -0.9034 15 8 2.2726 -6.5246 -1.9421 16 6 1.9360 -8.2811 -0.4560 17 7 1.4179 -8.8396 0.6902 18 1 0.8686 -8.3789 1.3437 19 6 1.7949 -10.1411 0.7541 20 6 2.5557 -10.4372 -0.3226 21 6 2.6583 -9.2733 -1.1109 22 6 3.3940 -9.1334 -2.3894 23 6 2.7645 -8.5760 -3.5018 24 6 3.4561 -8.4443 -4.6887 25 6 4.7683 -8.8730 -4.7789 26 6 5.3965 -9.4316 -3.6802 27 6 4.7168 -9.5639 -2.4866 28 6 -0.4485 -4.0441 -0.0288 29 1 -1.2983 -4.2512 -0.6792 30 8 -0.6913 -4.5381 1.2900 31 6 -0.1375 -2.5328 -0.0006 32 1 -0.4850 0.8401 0.0004 33 1 2.1658 -4.0424 1.0179 34 1 2.8332 -3.7403 -0.6157 35 1 0.6205 -6.3372 0.6626 36 1 1.5309 -10.8307 1.5422 37 1 3.0017 -11.3959 -0.5424 38 1 1.7389 -8.2444 -3.4336 39 1 2.9709 -8.0093 -5.5498 40 1 5.3045 -8.7713 -5.7109 41 1 6.4210 -9.7648 -3.7567 42 1 5.2084 -9.9998 -1.6294 43 1 -1.4933 -4.1864 1.7002 44 1 -0.5576 -2.0516 -0.8839 45 1 -0.5544 -2.0850 0.9015 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083944531.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:12:35 Heat of formation + Delta-G solvation = 21.373274 kcal Electronic energy + Delta-G solvation = -29260.051486 eV Core-core repulsion = 25244.065957 eV Total energy + Delta-G solvation = -4015.985530 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.44212 -39.28103 -38.66950 -37.74749 -34.90879 -34.10756 -32.56575 -31.73064 -30.78137 -30.11611 -28.91727 -28.24481 -26.96993 -24.60541 -23.32165 -22.41438 -21.99705 -20.78431 -20.53758 -19.98782 -19.32996 -18.85891 -17.28933 -16.81716 -16.53291 -15.80417 -15.35052 -15.20989 -14.89415 -14.79650 -14.54254 -14.08384 -14.00960 -13.70338 -13.58804 -13.24286 -13.17254 -13.04867 -12.84174 -12.70469 -12.59055 -12.25576 -12.21821 -11.33589 -11.09136 -10.99422 -10.92994 -10.87461 -10.56517 -10.52214 -10.13624 -9.92354 -9.84739 -9.40084 -9.35699 -8.82156 -8.72064 -8.69130 -8.54365 -7.99728 -6.90437 -5.77577 -3.10528 1.08089 1.60944 1.70892 2.62726 2.92682 3.25875 3.38426 3.44507 3.45600 3.47013 4.00367 4.45708 4.50820 4.72376 4.93176 4.95997 5.05492 5.12554 5.23520 5.25308 5.26778 5.33474 5.50721 5.59476 5.63714 5.67128 5.71989 5.81442 5.95426 6.04177 6.13441 6.16057 6.20893 6.44624 6.51461 6.57015 6.64006 6.66689 6.72980 6.82501 6.90699 7.14842 7.20096 7.28718 7.40923 7.69593 7.74728 7.99182 8.16694 8.37270 9.15385 9.75367 10.39410 11.34811 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.013272 B = 0.002915 C = 0.002542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2109.135365 B = 9603.556258 C =11011.505789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.009 4.009 3 Si 0.915 3.085 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.291 1.291 7 C -0.224 4.224 8 H 0.080 0.920 9 N -0.600 5.600 10 C 0.132 3.868 11 C 0.141 3.859 12 H 0.108 0.892 13 N -0.708 5.708 14 C 0.578 3.422 15 O -0.518 6.518 16 C -0.033 4.033 17 N -0.537 5.537 18 H 0.419 0.581 19 C 0.020 3.980 20 C -0.197 4.197 21 C -0.048 4.048 22 C -0.016 4.016 23 C -0.063 4.063 24 C -0.124 4.124 25 C -0.121 4.121 26 C -0.130 4.130 27 C -0.106 4.106 28 C 0.067 3.933 29 H 0.061 0.939 30 O -0.570 6.570 31 C 0.155 3.845 32 H 0.252 0.748 33 H 0.024 0.976 34 H 0.045 0.955 35 H 0.399 0.601 36 H 0.171 0.829 37 H 0.144 0.856 38 H 0.119 0.881 39 H 0.119 0.881 40 H 0.116 0.884 41 H 0.118 0.882 42 H 0.119 0.881 43 H 0.380 0.620 44 H 0.056 0.944 45 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.709 -22.888 -0.625 22.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.205 4.205 3 Si 0.745 3.255 4 H -0.204 1.204 5 H -0.217 1.217 6 H -0.218 1.218 7 C -0.352 4.352 8 H 0.098 0.902 9 N -0.327 5.327 10 C 0.004 3.996 11 C 0.035 3.965 12 H 0.126 0.874 13 N -0.359 5.359 14 C 0.365 3.635 15 O -0.393 6.393 16 C -0.147 4.147 17 N -0.133 5.133 18 H 0.257 0.743 19 C -0.115 4.115 20 C -0.221 4.221 21 C -0.057 4.057 22 C -0.017 4.017 23 C -0.081 4.081 24 C -0.143 4.143 25 C -0.140 4.140 26 C -0.148 4.148 27 C -0.124 4.124 28 C 0.007 3.993 29 H 0.079 0.921 30 O -0.376 6.376 31 C 0.029 3.971 32 H 0.062 0.938 33 H 0.042 0.958 34 H 0.064 0.936 35 H 0.234 0.766 36 H 0.189 0.811 37 H 0.162 0.838 38 H 0.137 0.863 39 H 0.137 0.863 40 H 0.134 0.866 41 H 0.136 0.864 42 H 0.137 0.863 43 H 0.228 0.772 44 H 0.074 0.926 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.492 -22.562 -1.404 22.654 hybrid contribution -0.608 1.378 1.022 1.820 sum 0.884 -21.184 -0.382 21.206 Atomic orbital electron populations 1.69918 1.04917 1.25028 1.57608 1.24790 0.95791 0.97734 1.02203 0.85992 0.78804 0.83468 0.77220 1.20420 1.21674 1.21757 1.19151 0.90615 0.82135 1.43308 0.90182 1.44283 1.01226 0.99899 1.87300 1.21827 0.94637 0.85765 0.97339 1.22371 0.95336 0.79074 0.99671 0.87441 1.45670 1.52797 1.11334 1.26125 1.17034 0.79186 0.83013 0.84269 1.90898 1.48014 1.77106 1.23304 1.20583 1.08039 0.94452 0.91591 1.42008 1.41264 1.10422 1.19597 0.74303 1.21880 1.02611 0.85332 1.01685 1.20876 1.06060 0.98896 0.96254 1.18547 0.99695 0.92420 0.95003 1.18069 0.93109 0.99269 0.91246 1.21117 1.00041 0.95306 0.91681 1.21033 0.94877 1.00417 0.97926 1.21130 0.95137 0.99219 0.98475 1.20955 0.99621 1.01044 0.93225 1.21101 0.93572 1.00149 0.97609 1.23535 0.95624 0.97000 0.83099 0.92114 1.86217 1.49254 1.71515 1.30662 1.21856 0.85602 0.87625 1.01999 0.93771 0.95799 0.93644 0.76629 0.81134 0.83825 0.86301 0.86324 0.86561 0.86411 0.86334 0.77229 0.92566 0.92890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.70 10.31 55.49 0.57 -26.13 16 2 C -0.01 -0.27 5.49 -17.43 -0.10 -0.36 16 3 Si 0.91 22.22 29.55 -169.99 -5.02 17.20 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 7 C -0.22 -6.32 10.28 -15.06 -0.15 -6.47 16 8 H 0.08 2.22 7.83 -52.49 -0.41 1.81 16 9 N -0.60 -15.42 3.39 -170.07 -0.58 -16.00 16 10 C 0.13 2.90 6.92 -2.53 -0.02 2.88 16 11 C 0.14 2.59 3.31 -65.78 -0.22 2.37 16 12 H 0.11 2.11 7.54 -51.93 -0.39 1.72 16 13 N -0.71 -10.76 5.16 -53.12 -0.27 -11.03 16 14 C 0.58 9.28 7.76 -12.98 -0.10 9.18 16 15 O -0.52 -9.92 13.06 5.17 0.07 -9.85 16 16 C -0.03 -0.44 7.07 -81.66 -0.58 -1.01 16 17 N -0.54 -5.05 5.98 -9.24 -0.06 -5.11 16 18 H 0.42 2.91 8.18 -40.82 -0.33 2.58 16 19 C 0.02 0.16 11.86 -16.98 -0.20 -0.04 16 20 C -0.20 -1.99 10.73 -39.67 -0.43 -2.42 16 21 C -0.05 -0.63 5.67 -104.47 -0.59 -1.23 16 22 C -0.02 -0.23 5.27 -104.92 -0.55 -0.78 16 23 C -0.06 -0.92 7.63 -39.22 -0.30 -1.22 16 24 C -0.12 -1.63 10.03 -39.63 -0.40 -2.03 16 25 C -0.12 -1.44 10.04 -39.51 -0.40 -1.83 16 26 C -0.13 -1.51 10.03 -39.63 -0.40 -1.91 16 27 C -0.11 -1.33 9.74 -39.22 -0.38 -1.71 16 28 C 0.07 1.18 4.19 -24.90 -0.10 1.08 16 29 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 30 O -0.57 -8.64 12.15 -35.23 -0.43 -9.06 16 31 C 0.15 3.58 5.14 -3.06 -0.02 3.57 16 32 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 33 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 35 H 0.40 5.19 6.71 -40.82 -0.27 4.91 16 36 H 0.17 0.74 8.06 -52.49 -0.42 0.31 16 37 H 0.14 1.17 8.06 -52.49 -0.42 0.75 16 38 H 0.12 1.79 7.35 -52.49 -0.39 1.41 16 39 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 40 H 0.12 1.09 8.06 -52.48 -0.42 0.67 16 41 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 42 H 0.12 1.27 8.06 -52.48 -0.42 0.85 16 43 H 0.38 4.41 9.12 45.56 0.42 4.83 16 44 H 0.06 1.44 7.38 -51.93 -0.38 1.05 16 45 H 0.05 1.34 7.44 -51.93 -0.39 0.95 16 LS Contribution 374.72 15.07 5.65 5.65 Total: -1.00 -34.36 374.72 -10.09 -44.46 By element: Atomic # 1 Polarization: 16.91 SS G_CDS: -5.09 Total: 11.82 kcal Atomic # 6 Polarization: 3.00 SS G_CDS: -4.93 Total: -1.93 kcal Atomic # 7 Polarization: -57.94 SS G_CDS: -0.33 Total: -58.27 kcal Atomic # 8 Polarization: -18.56 SS G_CDS: -0.36 Total: -18.92 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -34.36 -10.09 -44.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083944531.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.829 kcal (2) G-P(sol) polarization free energy of solvation -34.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.456 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds