Wall clock time and date at job start Wed Apr 1 2020 00:12:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86791 * 120.00094 * 2 1 4 4 H 1.48503 * 109.47477 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47288 * 300.00239 * 3 2 1 6 6 H 1.48504 * 109.47150 * 60.00322 * 3 2 1 7 7 C 1.38811 * 119.99909 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00320 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00086 * 359.97438 * 7 2 1 10 10 C 1.47427 * 125.65152 * 180.02562 * 9 7 2 11 11 C 1.54912 * 104.83496 * 204.15358 * 10 9 7 12 12 H 1.08995 * 111.03716 * 81.07658 * 11 10 9 13 13 N 1.46497 * 111.00281 * 204.91817 * 11 10 9 14 14 C 1.34778 * 119.99482 * 267.19482 * 13 11 10 15 15 O 1.21727 * 120.00462 * 0.02562 * 14 13 11 16 16 C 1.46397 * 119.99715 * 180.02562 * 14 13 11 17 17 N 1.37631 * 126.32885 * 359.97438 * 16 14 13 18 18 H 0.97007 * 125.55233 * 0.03682 * 17 16 14 19 19 C 1.35644 * 108.89983 * 179.74073 * 17 16 14 20 20 C 1.35116 * 109.22251 * 0.43953 * 19 17 16 21 21 C 1.39102 * 126.32795 * 179.97438 * 16 14 13 22 22 C 1.48170 * 126.63303 * 0.02562 * 21 16 14 23 23 C 1.39447 * 120.13105 * 309.72256 * 22 21 16 24 24 C 1.37995 * 119.86586 * 179.78761 * 23 22 21 25 25 C 1.38341 * 120.12949 * 0.47202 * 24 23 22 26 26 C 1.38339 * 120.26976 * 359.77933 * 25 24 23 27 27 C 1.37992 * 120.12882 * 359.97438 * 26 25 24 28 28 C 1.55158 * 101.57978 * 322.99195 * 11 10 9 29 29 H 1.08993 * 110.71885 * 153.87001 * 28 11 10 30 30 O 1.42904 * 110.71559 * 276.96274 * 28 11 10 31 31 C 1.47022 * 125.64915 * 0.02979 * 9 7 2 32 32 H 0.96999 * 119.99816 * 359.97438 * 1 2 3 33 33 H 1.08997 * 110.36642 * 85.31346 * 10 9 7 34 34 H 1.09003 * 110.36495 * 322.99091 * 10 9 7 35 35 H 0.96998 * 120.00553 * 87.19303 * 13 11 10 36 36 H 1.08001 * 125.38573 * 180.29509 * 19 17 16 37 37 H 1.08002 * 126.10367 * 179.83590 * 20 19 17 38 38 H 1.08001 * 120.06739 * 0.02562 * 23 22 21 39 39 H 1.07995 * 119.93524 * 180.23006 * 24 23 22 40 40 H 1.08005 * 119.86861 * 179.76479 * 25 24 23 41 41 H 1.07996 * 119.93977 * 179.97438 * 26 25 24 42 42 H 1.08007 * 120.06574 * 180.02562 * 27 26 25 43 43 H 0.96700 * 113.99728 * 180.02562 * 30 28 11 44 44 H 1.09000 * 109.88323 * 59.49946 * 31 9 7 45 45 H 1.08999 * 109.88455 * 298.33863 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8915 2.3963 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3880 -0.0005 10 6 1.9333 -3.7312 -0.0005 11 6 0.8520 -4.6559 -0.6133 12 1 0.8571 -4.5961 -1.7016 13 7 1.0290 -6.0394 -0.1653 14 6 1.7595 -6.8984 -0.9034 15 8 2.2726 -6.5246 -1.9421 16 6 1.9360 -8.2811 -0.4560 17 7 1.4179 -8.8396 0.6902 18 1 0.8686 -8.3789 1.3437 19 6 1.7949 -10.1411 0.7541 20 6 2.5557 -10.4372 -0.3226 21 6 2.6583 -9.2733 -1.1109 22 6 3.3940 -9.1334 -2.3894 23 6 2.7645 -8.5760 -3.5018 24 6 3.4561 -8.4443 -4.6887 25 6 4.7683 -8.8730 -4.7789 26 6 5.3965 -9.4316 -3.6802 27 6 4.7168 -9.5639 -2.4866 28 6 -0.4485 -4.0441 -0.0288 29 1 -1.2983 -4.2512 -0.6792 30 8 -0.6913 -4.5381 1.2900 31 6 -0.1375 -2.5328 -0.0006 32 1 -0.4850 0.8401 0.0004 33 1 2.1658 -4.0424 1.0179 34 1 2.8332 -3.7403 -0.6157 35 1 0.6205 -6.3372 0.6626 36 1 1.5309 -10.8307 1.5422 37 1 3.0017 -11.3959 -0.5424 38 1 1.7389 -8.2444 -3.4336 39 1 2.9709 -8.0093 -5.5498 40 1 5.3045 -8.7713 -5.7109 41 1 6.4210 -9.7648 -3.7567 42 1 5.2084 -9.9998 -1.6294 43 1 -1.4933 -4.1864 1.7002 44 1 -0.5576 -2.0516 -0.8839 45 1 -0.5544 -2.0850 0.9015 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083944531.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:12:34 Heat of formation + Delta-G solvation = -3.452340 kcal Electronic energy + Delta-G solvation = -29261.128006 eV Core-core repulsion = 25244.065957 eV Total energy + Delta-G solvation = -4017.062049 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.32184 -40.64680 -39.59995 -39.19772 -36.50535 -35.54416 -33.77028 -33.34155 -31.73638 -31.14408 -30.27933 -29.58368 -28.57590 -26.47412 -24.41105 -23.35162 -23.11439 -22.28108 -21.87439 -21.27153 -20.33976 -19.93557 -19.05652 -18.33801 -17.49374 -16.97422 -16.81866 -16.59359 -16.28753 -15.84631 -15.79737 -15.56797 -15.27245 -14.85500 -14.73828 -14.57065 -14.41648 -14.26719 -14.19266 -13.96687 -13.72573 -13.63840 -13.22771 -13.12721 -12.83869 -12.79514 -12.33353 -12.13347 -12.02695 -11.94929 -11.91474 -11.85980 -11.21499 -10.91682 -10.80558 -10.27218 -10.17803 -9.69163 -9.39016 -8.99077 -8.92698 -7.91841 -5.27821 0.09608 0.63313 0.78294 1.43594 1.44647 1.55145 1.84544 1.95815 2.21587 2.31842 2.46679 3.03673 3.13861 3.27312 3.57499 3.75839 3.89181 3.91263 4.00303 4.13561 4.19890 4.21126 4.34347 4.35362 4.42486 4.47874 4.60945 4.69461 4.78057 4.79908 4.83161 4.96933 5.17873 5.22968 5.28376 5.31669 5.38901 5.44117 5.57970 5.61598 5.69465 5.72517 5.81121 5.92727 6.11310 6.21120 6.48326 6.62074 6.82573 7.03710 7.16986 7.67220 8.30739 9.18167 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.013272 B = 0.002915 C = 0.002542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2109.135365 B = 9603.556258 C =11011.505789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.059 4.059 3 Si 0.980 3.020 4 H -0.271 1.271 5 H -0.289 1.289 6 H -0.287 1.287 7 C -0.248 4.248 8 H 0.075 0.925 9 N -0.621 5.621 10 C 0.133 3.867 11 C 0.155 3.845 12 H 0.092 0.908 13 N -0.696 5.696 14 C 0.577 3.423 15 O -0.558 6.558 16 C -0.068 4.068 17 N -0.525 5.525 18 H 0.432 0.568 19 C 0.055 3.945 20 C -0.214 4.214 21 C -0.060 4.060 22 C -0.036 4.036 23 C -0.086 4.086 24 C -0.140 4.140 25 C -0.127 4.127 26 C -0.131 4.131 27 C -0.115 4.115 28 C 0.094 3.906 29 H 0.091 0.909 30 O -0.564 6.564 31 C 0.160 3.840 32 H 0.250 0.750 33 H 0.024 0.976 34 H 0.025 0.975 35 H 0.412 0.588 36 H 0.220 0.780 37 H 0.163 0.837 38 H 0.100 0.900 39 H 0.127 0.873 40 H 0.142 0.858 41 H 0.147 0.853 42 H 0.136 0.864 43 H 0.399 0.601 44 H 0.025 0.975 45 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.043 -25.264 0.752 25.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.252 4.252 3 Si 0.808 3.192 4 H -0.196 1.196 5 H -0.216 1.216 6 H -0.214 1.214 7 C -0.377 4.377 8 H 0.093 0.907 9 N -0.348 5.348 10 C 0.007 3.993 11 C 0.048 3.952 12 H 0.110 0.890 13 N -0.348 5.348 14 C 0.366 3.634 15 O -0.436 6.436 16 C -0.182 4.182 17 N -0.122 5.122 18 H 0.272 0.728 19 C -0.082 4.082 20 C -0.237 4.237 21 C -0.069 4.069 22 C -0.037 4.037 23 C -0.105 4.105 24 C -0.158 4.158 25 C -0.145 4.145 26 C -0.149 4.149 27 C -0.133 4.133 28 C 0.033 3.967 29 H 0.108 0.892 30 O -0.373 6.373 31 C 0.035 3.965 32 H 0.059 0.941 33 H 0.042 0.958 34 H 0.044 0.956 35 H 0.249 0.751 36 H 0.237 0.763 37 H 0.180 0.820 38 H 0.118 0.882 39 H 0.145 0.855 40 H 0.159 0.841 41 H 0.165 0.835 42 H 0.154 0.846 43 H 0.250 0.750 44 H 0.043 0.957 45 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 1.793 -24.964 0.019 25.028 hybrid contribution -0.677 2.017 0.632 2.219 sum 1.116 -22.948 0.651 22.984 Atomic orbital electron populations 1.70110 1.06006 1.25487 1.57930 1.25599 0.96777 1.00763 1.02078 0.84996 0.77982 0.79252 0.76993 1.19557 1.21554 1.21381 1.19443 0.90882 0.83676 1.43695 0.90681 1.44552 1.02531 1.00510 1.87185 1.21852 0.95095 0.85336 0.97058 1.21914 0.94337 0.80274 0.98632 0.88955 1.45428 1.52992 1.09743 1.26631 1.17439 0.78224 0.84108 0.83617 1.90874 1.49604 1.78109 1.25062 1.20107 1.10891 0.93211 0.93958 1.42005 1.40751 1.10903 1.18540 0.72820 1.22655 0.99401 0.84764 1.01345 1.21182 1.07190 0.98763 0.96545 1.18850 0.99431 0.93724 0.94929 1.18368 0.94097 0.99543 0.91658 1.21115 0.99660 0.96755 0.92933 1.21271 0.95832 1.00841 0.97890 1.21465 0.94642 0.98592 0.99797 1.21354 1.00844 1.00054 0.92657 1.21384 0.93119 1.00080 0.98708 1.23119 0.96024 0.92668 0.84872 0.89155 1.86179 1.50768 1.70914 1.29438 1.21718 0.84077 0.91429 0.99301 0.94073 0.95840 0.95622 0.75070 0.76324 0.81968 0.88186 0.85518 0.84065 0.83523 0.84609 0.74965 0.95692 0.95356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.88 10.31 21.65 0.22 -55.66 16 2 C -0.06 -3.37 5.49 84.86 0.47 -2.91 16 3 Si 0.98 46.36 29.55 68.60 2.03 48.38 16 4 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 5 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 6 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 7 C -0.25 -14.43 10.28 84.03 0.86 -13.57 16 8 H 0.08 4.30 7.83 -2.91 -0.02 4.27 16 9 N -0.62 -32.99 3.39 -691.98 -2.35 -35.34 16 10 C 0.13 6.07 6.92 86.86 0.60 6.67 16 11 C 0.16 5.78 3.31 46.39 0.15 5.93 16 12 H 0.09 3.77 7.54 -2.39 -0.02 3.75 16 13 N -0.70 -20.92 5.16 -440.17 -2.27 -23.20 16 14 C 0.58 18.84 7.76 86.37 0.67 19.51 16 15 O -0.56 -22.51 13.06 -4.43 -0.06 -22.57 16 16 C -0.07 -1.77 7.07 40.57 0.29 -1.48 16 17 N -0.53 -8.44 5.98 -183.13 -1.10 -9.54 16 18 H 0.43 4.61 8.18 -92.70 -0.76 3.85 16 19 C 0.05 0.66 11.86 83.38 0.99 1.65 16 20 C -0.21 -3.75 10.73 22.21 0.24 -3.51 16 21 C -0.06 -1.55 5.67 -19.77 -0.11 -1.66 16 22 C -0.04 -1.03 5.27 -20.05 -0.11 -1.14 16 23 C -0.09 -2.65 7.63 22.50 0.17 -2.48 16 24 C -0.14 -3.80 10.03 22.24 0.22 -3.58 16 25 C -0.13 -2.92 10.04 22.32 0.22 -2.69 16 26 C -0.13 -2.86 10.03 22.24 0.22 -2.64 16 27 C -0.11 -2.79 9.74 22.50 0.22 -2.57 16 28 C 0.09 3.22 4.19 31.78 0.13 3.36 16 29 H 0.09 2.67 8.14 -2.39 -0.02 2.65 16 30 O -0.56 -15.95 12.15 -148.98 -1.81 -17.76 16 31 C 0.16 7.62 5.14 86.73 0.45 8.07 16 32 H 0.25 14.24 8.31 -92.71 -0.77 13.47 16 33 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.41 10.05 6.71 -92.71 -0.62 9.43 16 36 H 0.22 0.51 8.06 -2.91 -0.02 0.48 16 37 H 0.16 2.15 8.06 -2.91 -0.02 2.12 16 38 H 0.10 3.31 7.35 -2.91 -0.02 3.29 16 39 H 0.13 3.02 8.06 -2.91 -0.02 3.00 16 40 H 0.14 2.43 8.06 -2.91 -0.02 2.41 16 41 H 0.15 2.26 8.06 -2.91 -0.02 2.24 16 42 H 0.14 2.69 8.06 -2.91 -0.02 2.67 16 43 H 0.40 8.28 9.12 -74.06 -0.68 7.61 16 44 H 0.02 1.33 7.38 -2.39 -0.02 1.31 16 45 H 0.03 1.47 7.44 -2.39 -0.02 1.45 16 Total: -1.00 -78.89 374.72 -0.65 -79.53 By element: Atomic # 1 Polarization: 30.18 SS G_CDS: -1.00 Total: 29.17 kcal Atomic # 6 Polarization: 1.28 SS G_CDS: 5.69 Total: 6.97 kcal Atomic # 7 Polarization: -118.23 SS G_CDS: -5.49 Total: -123.73 kcal Atomic # 8 Polarization: -38.46 SS G_CDS: -1.87 Total: -40.33 kcal Atomic # 14 Polarization: 46.36 SS G_CDS: 2.03 Total: 48.38 kcal Total: -78.89 -0.65 -79.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083944531.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.081 kcal (2) G-P(sol) polarization free energy of solvation -78.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds