Wall clock time and date at job start Tue Mar 31 2020 23:45:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 119.99476 * 2 1 4 4 H 1.48500 * 109.47195 * 269.99491 * 3 2 1 5 5 H 1.48492 * 109.47326 * 29.99882 * 3 2 1 6 6 H 1.48509 * 109.46626 * 149.99804 * 3 2 1 7 7 C 1.38812 * 119.99862 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00594 * 0.02562 * 7 2 1 9 9 N 1.36943 * 119.99300 * 180.02562 * 7 2 1 10 10 C 1.46499 * 119.99458 * 180.02562 * 9 7 2 11 11 H 1.09005 * 112.85131 * 336.19816 * 10 9 7 12 12 C 1.53956 * 113.74239 * 107.40478 * 10 9 7 13 13 C 1.53785 * 87.02052 * 139.94047 * 12 10 9 14 14 H 1.09001 * 113.61152 * 89.22775 * 13 12 10 15 15 C 1.52997 * 113.61570 * 220.04627 * 13 12 10 16 16 N 1.46505 * 109.47212 * 274.13670 * 15 13 12 17 17 C 1.34771 * 119.99622 * 179.97438 * 16 15 13 18 18 O 1.21484 * 120.00555 * 0.02562 * 17 16 15 19 19 C 1.48291 * 119.99819 * 180.02562 * 17 16 15 20 20 C 1.35672 * 118.87250 * 180.02562 * 19 17 16 21 21 C 1.42054 * 119.93412 * 179.97438 * 20 19 17 22 22 O 1.21933 * 121.06880 * 179.97438 * 21 20 19 23 23 C 1.47213 * 117.86577 * 0.02562 * 21 20 19 24 24 C 1.39585 * 121.36122 * 180.02562 * 23 21 20 25 25 C 1.36641 * 119.69744 * 179.97438 * 24 23 21 26 26 C 1.38883 * 120.55801 * 0.02562 * 25 24 23 27 27 C 1.37717 * 120.71807 * 359.97320 * 26 25 24 28 28 C 1.39292 * 119.72006 * 0.02562 * 27 26 25 29 29 N 1.36474 * 118.86749 * 359.73916 * 19 17 16 30 30 H 0.96997 * 119.18315 * 359.97438 * 29 19 17 31 31 C 1.53777 * 113.61234 * 205.00061 * 10 9 7 32 32 H 0.96993 * 120.00483 * 0.02562 * 1 2 3 33 33 H 0.96995 * 120.00108 * 0.02562 * 9 7 2 34 34 H 1.09000 * 113.61511 * 25.42215 * 12 10 9 35 35 H 1.09001 * 113.66554 * 254.46954 * 12 10 9 36 36 H 1.09002 * 109.47153 * 154.13662 * 15 13 12 37 37 H 1.09001 * 109.46832 * 34.13853 * 15 13 12 38 38 H 0.96996 * 119.99606 * 0.02562 * 16 15 13 39 39 H 1.08000 * 120.03574 * 359.97438 * 20 19 17 40 40 H 1.08003 * 120.15185 * 359.95662 * 24 23 21 41 41 H 1.08000 * 119.72357 * 180.02562 * 25 24 23 42 42 H 1.07997 * 119.64438 * 179.97438 * 26 25 24 43 43 H 1.07999 * 120.14039 * 180.02562 * 27 26 25 44 44 H 1.09011 * 113.61618 * 105.38985 * 31 10 9 45 45 H 1.09000 * 113.69499 * 334.49383 * 31 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 1.4703 -2.1375 0.0005 9 7 3.3797 -1.2020 0.0011 10 6 4.1122 -2.4707 0.0011 11 1 3.5278 -3.2970 0.4060 12 6 4.7877 -2.7965 -1.3435 13 6 5.9845 -3.3108 -0.5261 14 1 5.9133 -4.3666 -0.2647 15 6 7.3418 -2.9373 -1.1253 16 7 7.7272 -3.9383 -2.1231 17 6 8.8940 -3.8143 -2.7862 18 8 9.6263 -2.8726 -2.5562 19 6 9.2839 -4.8272 -3.7966 20 6 10.4637 -4.6801 -4.4502 21 6 10.8597 -5.6374 -5.4221 22 8 11.9153 -5.5253 -6.0221 23 6 9.9543 -6.7686 -5.6826 24 6 10.2712 -7.7514 -6.6218 25 6 9.4060 -8.7870 -6.8361 26 6 8.2141 -8.8695 -6.1279 27 6 7.8814 -7.9110 -5.1967 28 6 8.7482 -6.8463 -4.9616 29 7 8.4464 -5.8785 -4.0328 30 1 7.6155 -5.9421 -3.5364 31 6 5.5258 -2.3658 0.5971 32 1 -0.4850 0.8399 -0.0004 33 1 3.8646 -0.3620 0.0014 34 1 5.0149 -1.9149 -1.9429 35 1 4.2793 -3.5760 -1.9110 36 1 8.0915 -2.9049 -0.3347 37 1 7.2723 -1.9587 -1.6003 38 1 7.1423 -4.6899 -2.3070 39 1 11.1012 -3.8361 -4.2318 40 1 11.1959 -7.6934 -7.1767 41 1 9.6509 -9.5479 -7.5623 42 1 7.5409 -9.6942 -6.3093 43 1 6.9523 -7.9845 -4.6509 44 1 5.6126 -2.7981 1.5941 45 1 5.9564 -1.3667 0.5301 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086140920.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:45:06 Heat of formation + Delta-G solvation = 11.912168 kcal Electronic energy + Delta-G solvation = -27822.182542 eV Core-core repulsion = 23805.786748 eV Total energy + Delta-G solvation = -4016.395794 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.79230 -40.17972 -38.83201 -38.46466 -37.46137 -35.25833 -33.50793 -32.59791 -31.43217 -30.88402 -30.33040 -28.11741 -25.44715 -25.30657 -24.16362 -23.64163 -22.86198 -21.33407 -21.26741 -19.67240 -19.13164 -18.85578 -18.57587 -17.52814 -16.65750 -16.43614 -16.14549 -16.01545 -15.46366 -15.21910 -14.97778 -14.75577 -14.55557 -14.48822 -14.14589 -13.93443 -13.76373 -13.67657 -13.49317 -12.77557 -12.53735 -12.41532 -12.37425 -12.13967 -11.84330 -11.78597 -11.74324 -11.01767 -10.85418 -10.63354 -10.32925 -10.24315 -10.03882 -9.95795 -9.93533 -9.65905 -9.57541 -9.48730 -8.98950 -8.28811 -7.36924 -5.86587 -3.22947 -0.02774 0.39870 1.02105 2.10049 2.29121 2.40341 2.73055 3.31046 3.33981 3.39804 3.50387 3.78778 4.00984 4.12229 4.31728 4.50500 4.51884 4.62048 4.65720 4.66311 4.77382 4.90155 4.96266 5.18876 5.28430 5.29231 5.34054 5.36320 5.47163 5.50969 5.61249 5.63997 5.67082 5.78667 5.85134 5.99880 6.02479 6.04352 6.07282 6.12565 6.28030 6.33096 6.42165 6.50812 6.82394 6.87743 7.42335 7.50610 7.88747 8.32945 9.10283 9.82991 10.02020 11.31383 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.017356 B = 0.001987 C = 0.001876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.880740 B =14090.020753 C =14923.217011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.006 3.994 3 Si 0.884 3.116 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.277 1.277 7 C -0.251 4.251 8 H 0.091 0.909 9 N -0.736 5.736 10 C 0.173 3.827 11 H 0.084 0.916 12 C -0.163 4.163 13 C -0.129 4.129 14 H 0.092 0.908 15 C 0.130 3.870 16 N -0.716 5.716 17 C 0.550 3.450 18 O -0.502 6.502 19 C 0.155 3.845 20 C -0.233 4.233 21 C 0.418 3.582 22 O -0.483 6.483 23 C -0.203 4.203 24 C -0.027 4.027 25 C -0.161 4.161 26 C -0.052 4.052 27 C -0.174 4.174 28 C 0.202 3.798 29 N -0.606 5.606 30 H 0.416 0.584 31 C -0.144 4.144 32 H 0.260 0.740 33 H 0.363 0.637 34 H 0.078 0.922 35 H 0.059 0.941 36 H 0.073 0.927 37 H 0.077 0.923 38 H 0.396 0.604 39 H 0.166 0.834 40 H 0.139 0.861 41 H 0.131 0.869 42 H 0.134 0.866 43 H 0.137 0.863 44 H 0.067 0.933 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.455 -19.872 -9.556 28.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.190 4.190 3 Si 0.714 3.286 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.203 1.203 7 C -0.381 4.381 8 H 0.109 0.891 9 N -0.376 5.376 10 C 0.061 3.939 11 H 0.102 0.898 12 C -0.204 4.204 13 C -0.148 4.148 14 H 0.110 0.890 15 C 0.007 3.993 16 N -0.368 5.368 17 C 0.333 3.667 18 O -0.375 6.375 19 C 0.045 3.955 20 C -0.261 4.261 21 C 0.304 3.696 22 O -0.364 6.364 23 C -0.207 4.207 24 C -0.046 4.046 25 C -0.180 4.180 26 C -0.071 4.071 27 C -0.195 4.195 28 C 0.099 3.901 29 N -0.220 5.220 30 H 0.253 0.747 31 C -0.184 4.184 32 H 0.071 0.929 33 H 0.196 0.804 34 H 0.097 0.903 35 H 0.078 0.922 36 H 0.091 0.909 37 H 0.095 0.905 38 H 0.231 0.769 39 H 0.183 0.817 40 H 0.157 0.843 41 H 0.149 0.851 42 H 0.152 0.848 43 H 0.154 0.846 44 H 0.085 0.915 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 19.281 -19.090 -9.653 28.798 hybrid contribution -0.309 0.811 0.148 0.880 sum 18.972 -18.279 -9.504 28.007 Atomic orbital electron populations 1.69697 1.05138 1.25991 1.57004 1.24710 0.95275 0.97337 1.01722 0.86557 0.79230 0.84910 0.77857 1.21013 1.21624 1.20269 1.19116 0.80640 0.94753 1.43605 0.89139 1.42756 1.04122 1.01984 1.88705 1.21511 0.89505 0.90158 0.92697 0.89777 1.23987 0.95861 1.00603 0.99969 1.22675 0.92745 1.00104 0.99320 0.88964 1.21617 0.96372 0.91247 0.90029 1.46013 1.20464 1.28929 1.41379 1.18097 0.82198 0.85273 0.81085 1.90866 1.51419 1.30977 1.64280 1.20133 0.91941 0.87580 0.95838 1.22497 0.97250 1.04713 1.01596 1.18508 0.85543 0.83858 0.81669 1.90728 1.23034 1.75232 1.47373 1.20345 0.96260 1.01146 1.02928 1.20890 0.98995 0.91135 0.93535 1.20918 0.95117 0.99746 1.02181 1.21179 0.96000 0.97052 0.92844 1.20736 1.00440 0.95097 1.03189 1.17868 0.94101 0.88863 0.89293 1.41208 1.22159 1.21193 1.37465 0.74677 1.23472 0.98934 0.98927 0.97083 0.92947 0.80401 0.90314 0.92236 0.90858 0.90501 0.76920 0.81696 0.84302 0.85091 0.84804 0.84552 0.91453 0.90184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.49 13.97 55.49 0.78 -27.71 16 2 C 0.01 0.16 5.50 -17.43 -0.10 0.07 16 3 Si 0.88 21.50 27.74 -169.99 -4.71 16.78 16 4 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 6 H -0.28 -6.30 6.52 56.52 0.37 -5.93 16 7 C -0.25 -6.77 10.45 -15.06 -0.16 -6.93 16 8 H 0.09 2.60 8.06 -52.49 -0.42 2.18 16 9 N -0.74 -16.26 5.21 -52.55 -0.27 -16.53 16 10 C 0.17 2.88 4.48 -67.03 -0.30 2.58 16 11 H 0.08 1.42 8.10 -51.93 -0.42 1.00 16 12 C -0.16 -2.19 7.45 -25.82 -0.19 -2.38 16 13 C -0.13 -1.30 3.75 -89.81 -0.34 -1.63 16 14 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 15 C 0.13 1.26 5.50 -4.04 -0.02 1.24 16 16 N -0.72 -5.65 5.54 -61.11 -0.34 -5.99 16 17 C 0.55 5.56 7.80 -12.13 -0.09 5.47 16 18 O -0.50 -6.97 16.18 5.38 0.09 -6.88 16 19 C 0.16 1.38 6.75 -82.58 -0.56 0.83 16 20 C -0.23 -2.55 9.49 -39.04 -0.37 -2.92 16 21 C 0.42 4.99 6.97 -34.48 -0.24 4.75 16 22 O -0.48 -7.13 17.34 4.98 0.09 -7.04 16 23 C -0.20 -1.93 5.89 -104.81 -0.62 -2.55 16 24 C -0.03 -0.22 9.61 -39.66 -0.38 -0.60 16 25 C -0.16 -0.91 9.97 -39.92 -0.40 -1.31 16 26 C -0.05 -0.25 10.01 -39.53 -0.40 -0.64 16 27 C -0.17 -0.89 9.91 -39.38 -0.39 -1.28 16 28 C 0.20 1.47 6.66 -84.00 -0.56 0.91 16 29 N -0.61 -3.77 5.32 -7.43 -0.04 -3.81 16 30 H 0.42 1.32 6.78 -40.82 -0.28 1.04 16 31 C -0.14 -1.87 7.39 -25.92 -0.19 -2.06 16 32 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 33 H 0.36 7.95 5.79 -40.82 -0.24 7.71 16 34 H 0.08 1.16 7.92 -51.93 -0.41 0.75 16 35 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.08 0.87 7.87 -51.93 -0.41 0.47 16 38 H 0.40 1.92 6.60 -40.82 -0.27 1.65 16 39 H 0.17 1.90 7.48 -52.49 -0.39 1.51 16 40 H 0.14 1.08 7.78 -52.48 -0.41 0.67 16 41 H 0.13 0.46 8.06 -52.49 -0.42 0.03 16 42 H 0.13 0.30 8.06 -52.49 -0.42 -0.12 16 43 H 0.14 0.35 8.06 -52.49 -0.42 -0.07 16 44 H 0.07 0.80 8.14 -51.92 -0.42 0.38 16 45 H 0.08 1.07 8.08 -51.93 -0.42 0.65 16 LS Contribution 379.12 15.07 5.71 5.71 Total: -1.00 -35.24 379.12 -9.80 -45.04 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: -5.79 Total: 6.88 kcal Atomic # 6 Polarization: -1.15 SS G_CDS: -5.30 Total: -6.45 kcal Atomic # 7 Polarization: -54.17 SS G_CDS: 0.12 Total: -54.04 kcal Atomic # 8 Polarization: -14.10 SS G_CDS: 0.17 Total: -13.93 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.71 Total: 16.78 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -35.24 -9.80 -45.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086140920.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.953 kcal (2) G-P(sol) polarization free energy of solvation -35.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.040 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds