Wall clock time and date at job start Tue Mar 31 2020 23:45:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 119.99476 * 2 1 4 4 H 1.48500 * 109.47195 * 269.99491 * 3 2 1 5 5 H 1.48492 * 109.47326 * 29.99882 * 3 2 1 6 6 H 1.48509 * 109.46626 * 149.99804 * 3 2 1 7 7 C 1.38812 * 119.99862 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00594 * 0.02562 * 7 2 1 9 9 N 1.36943 * 119.99300 * 180.02562 * 7 2 1 10 10 C 1.46499 * 119.99458 * 180.02562 * 9 7 2 11 11 H 1.09005 * 112.85131 * 336.19816 * 10 9 7 12 12 C 1.53956 * 113.74239 * 107.40478 * 10 9 7 13 13 C 1.53785 * 87.02052 * 139.94047 * 12 10 9 14 14 H 1.09001 * 113.61152 * 89.22775 * 13 12 10 15 15 C 1.52997 * 113.61570 * 220.04627 * 13 12 10 16 16 N 1.46505 * 109.47212 * 274.13670 * 15 13 12 17 17 C 1.34771 * 119.99622 * 179.97438 * 16 15 13 18 18 O 1.21484 * 120.00555 * 0.02562 * 17 16 15 19 19 C 1.48291 * 119.99819 * 180.02562 * 17 16 15 20 20 C 1.35672 * 118.87250 * 180.02562 * 19 17 16 21 21 C 1.42054 * 119.93412 * 179.97438 * 20 19 17 22 22 O 1.21933 * 121.06880 * 179.97438 * 21 20 19 23 23 C 1.47213 * 117.86577 * 0.02562 * 21 20 19 24 24 C 1.39585 * 121.36122 * 180.02562 * 23 21 20 25 25 C 1.36641 * 119.69744 * 179.97438 * 24 23 21 26 26 C 1.38883 * 120.55801 * 0.02562 * 25 24 23 27 27 C 1.37717 * 120.71807 * 359.97320 * 26 25 24 28 28 C 1.39292 * 119.72006 * 0.02562 * 27 26 25 29 29 N 1.36474 * 118.86749 * 359.73916 * 19 17 16 30 30 H 0.96997 * 119.18315 * 359.97438 * 29 19 17 31 31 C 1.53777 * 113.61234 * 205.00061 * 10 9 7 32 32 H 0.96993 * 120.00483 * 0.02562 * 1 2 3 33 33 H 0.96995 * 120.00108 * 0.02562 * 9 7 2 34 34 H 1.09000 * 113.61511 * 25.42215 * 12 10 9 35 35 H 1.09001 * 113.66554 * 254.46954 * 12 10 9 36 36 H 1.09002 * 109.47153 * 154.13662 * 15 13 12 37 37 H 1.09001 * 109.46832 * 34.13853 * 15 13 12 38 38 H 0.96996 * 119.99606 * 0.02562 * 16 15 13 39 39 H 1.08000 * 120.03574 * 359.97438 * 20 19 17 40 40 H 1.08003 * 120.15185 * 359.95662 * 24 23 21 41 41 H 1.08000 * 119.72357 * 180.02562 * 25 24 23 42 42 H 1.07997 * 119.64438 * 179.97438 * 26 25 24 43 43 H 1.07999 * 120.14039 * 180.02562 * 27 26 25 44 44 H 1.09011 * 113.61618 * 105.38985 * 31 10 9 45 45 H 1.09000 * 113.69499 * 334.49383 * 31 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 1.4703 -2.1375 0.0005 9 7 3.3797 -1.2020 0.0011 10 6 4.1122 -2.4707 0.0011 11 1 3.5278 -3.2970 0.4060 12 6 4.7877 -2.7965 -1.3435 13 6 5.9845 -3.3108 -0.5261 14 1 5.9133 -4.3666 -0.2647 15 6 7.3418 -2.9373 -1.1253 16 7 7.7272 -3.9383 -2.1231 17 6 8.8940 -3.8143 -2.7862 18 8 9.6263 -2.8726 -2.5562 19 6 9.2839 -4.8272 -3.7966 20 6 10.4637 -4.6801 -4.4502 21 6 10.8597 -5.6374 -5.4221 22 8 11.9153 -5.5253 -6.0221 23 6 9.9543 -6.7686 -5.6826 24 6 10.2712 -7.7514 -6.6218 25 6 9.4060 -8.7870 -6.8361 26 6 8.2141 -8.8695 -6.1279 27 6 7.8814 -7.9110 -5.1967 28 6 8.7482 -6.8463 -4.9616 29 7 8.4464 -5.8785 -4.0328 30 1 7.6155 -5.9421 -3.5364 31 6 5.5258 -2.3658 0.5971 32 1 -0.4850 0.8399 -0.0004 33 1 3.8646 -0.3620 0.0014 34 1 5.0149 -1.9149 -1.9429 35 1 4.2793 -3.5760 -1.9110 36 1 8.0915 -2.9049 -0.3347 37 1 7.2723 -1.9587 -1.6003 38 1 7.1423 -4.6899 -2.3070 39 1 11.1012 -3.8361 -4.2318 40 1 11.1959 -7.6934 -7.1767 41 1 9.6509 -9.5479 -7.5623 42 1 7.5409 -9.6942 -6.3093 43 1 6.9523 -7.9845 -4.6509 44 1 5.6126 -2.7981 1.5941 45 1 5.9564 -1.3667 0.5301 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086140920.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:45:05 Heat of formation + Delta-G solvation = -12.979904 kcal Electronic energy + Delta-G solvation = -27823.261943 eV Core-core repulsion = 23805.786748 eV Total energy + Delta-G solvation = -4017.475195 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.48900 -40.99980 -39.92414 -39.25304 -38.09574 -36.34918 -35.16761 -33.28856 -32.80581 -31.95008 -30.99331 -29.12023 -26.46309 -26.32888 -25.30924 -24.67228 -23.42906 -22.53372 -22.14262 -20.88505 -19.90410 -19.53500 -19.36386 -19.18238 -17.41137 -17.29750 -16.94942 -16.83086 -16.59816 -16.18621 -15.99657 -15.85015 -15.56131 -15.18554 -15.00700 -14.80796 -14.74872 -14.59086 -14.38361 -14.36165 -13.97386 -13.24580 -13.23381 -13.06892 -13.04150 -12.89461 -12.69937 -12.29321 -12.15626 -11.98570 -11.80868 -11.63544 -11.43348 -11.12423 -10.86260 -10.79222 -10.63653 -10.31150 -10.07147 -9.25235 -8.92189 -8.02389 -5.34261 -0.77205 -0.19614 0.48980 1.37741 1.39871 1.42294 1.47260 1.50276 1.66416 2.05828 2.47941 2.88209 3.09390 3.28185 3.34788 3.55333 3.59630 3.70268 3.78413 3.84341 3.95998 4.09606 4.25198 4.28639 4.33372 4.36516 4.37362 4.54031 4.66976 4.73747 4.78284 4.88039 4.92104 4.98678 5.01923 5.04538 5.10386 5.27116 5.36351 5.38619 5.45415 5.51324 5.66458 5.75890 5.79471 5.94909 6.19952 6.23869 6.62606 6.76069 7.09215 7.88400 8.04464 9.19009 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.017356 B = 0.001987 C = 0.001876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.880740 B =14090.020753 C =14923.217011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.984 5.984 2 C -0.068 4.068 3 Si 0.951 3.049 4 H -0.282 1.282 5 H -0.299 1.299 6 H -0.251 1.251 7 C -0.228 4.228 8 H 0.061 0.939 9 N -0.745 5.745 10 C 0.143 3.857 11 H 0.079 0.921 12 C -0.157 4.157 13 C -0.096 4.096 14 H 0.127 0.873 15 C 0.133 3.867 16 N -0.696 5.696 17 C 0.554 3.446 18 O -0.542 6.542 19 C 0.184 3.816 20 C -0.267 4.267 21 C 0.407 3.593 22 O -0.537 6.537 23 C -0.226 4.226 24 C -0.051 4.051 25 C -0.151 4.151 26 C -0.046 4.046 27 C -0.162 4.162 28 C 0.192 3.808 29 N -0.582 5.582 30 H 0.434 0.566 31 C -0.138 4.138 32 H 0.256 0.744 33 H 0.364 0.636 34 H 0.065 0.935 35 H 0.071 0.929 36 H 0.079 0.921 37 H 0.061 0.939 38 H 0.415 0.585 39 H 0.147 0.853 40 H 0.127 0.873 41 H 0.154 0.846 42 H 0.170 0.830 43 H 0.174 0.826 44 H 0.082 0.918 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.208 -22.473 -9.244 30.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.635 5.635 2 C -0.259 4.259 3 Si 0.779 3.221 4 H -0.208 1.208 5 H -0.226 1.226 6 H -0.176 1.176 7 C -0.359 4.359 8 H 0.079 0.921 9 N -0.386 5.386 10 C 0.034 3.966 11 H 0.097 0.903 12 C -0.197 4.197 13 C -0.115 4.115 14 H 0.145 0.855 15 C 0.010 3.990 16 N -0.349 5.349 17 C 0.338 3.662 18 O -0.418 6.418 19 C 0.071 3.929 20 C -0.295 4.295 21 C 0.297 3.703 22 O -0.423 6.423 23 C -0.230 4.230 24 C -0.069 4.069 25 C -0.170 4.170 26 C -0.065 4.065 27 C -0.182 4.182 28 C 0.088 3.912 29 N -0.197 5.197 30 H 0.276 0.724 31 C -0.177 4.177 32 H 0.065 0.935 33 H 0.197 0.803 34 H 0.083 0.917 35 H 0.090 0.910 36 H 0.097 0.903 37 H 0.080 0.920 38 H 0.253 0.747 39 H 0.165 0.835 40 H 0.145 0.855 41 H 0.172 0.828 42 H 0.188 0.812 43 H 0.191 0.809 44 H 0.100 0.900 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 19.033 -21.787 -9.327 30.396 hybrid contribution -0.356 1.395 0.064 1.441 sum 18.677 -20.392 -9.263 29.163 Atomic orbital electron populations 1.69872 1.07065 1.26522 1.60029 1.25499 0.96089 1.01162 1.03134 0.85465 0.78717 0.80040 0.77884 1.20843 1.22594 1.17595 1.19131 0.82900 0.93388 1.40489 0.92057 1.42819 1.02402 1.04181 1.89194 1.21999 0.90877 0.87888 0.95806 0.90299 1.23800 0.96914 1.00687 0.98310 1.22502 0.91268 1.01270 0.96494 0.85497 1.21488 0.96258 0.90920 0.90313 1.45788 1.19805 1.29020 1.40257 1.18133 0.82281 0.84773 0.81002 1.90861 1.52812 1.32631 1.65481 1.19826 0.91237 0.87537 0.94345 1.22288 0.98678 1.05076 1.03448 1.18897 0.85395 0.84736 0.81245 1.90680 1.25194 1.76756 1.49653 1.20341 0.97097 1.00942 1.04612 1.20953 0.99667 0.92236 0.94092 1.21258 0.94822 0.98890 1.02033 1.21666 0.95667 0.97594 0.91541 1.21192 1.00824 0.93467 1.02705 1.18036 0.93917 0.89819 0.89394 1.41162 1.22037 1.19807 1.36733 0.72444 1.23367 0.95753 0.99805 0.98771 0.93494 0.80255 0.91665 0.90990 0.90262 0.92031 0.74691 0.83500 0.85528 0.82792 0.81215 0.80892 0.89964 0.90585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -61.82 13.97 21.65 0.30 -61.52 16 2 C -0.07 -3.88 5.50 84.86 0.47 -3.41 16 3 Si 0.95 44.58 27.74 68.60 1.90 46.48 16 4 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 5 H -0.30 -14.35 7.11 99.48 0.71 -13.64 16 6 H -0.25 -10.56 6.52 99.48 0.65 -9.91 16 7 C -0.23 -12.33 10.45 84.03 0.88 -11.45 16 8 H 0.06 3.61 8.06 -2.91 -0.02 3.58 16 9 N -0.75 -31.98 5.21 -320.16 -1.67 -33.65 16 10 C 0.14 4.44 4.48 45.58 0.20 4.65 16 11 H 0.08 2.52 8.10 -2.38 -0.02 2.50 16 12 C -0.16 -3.69 7.45 31.18 0.23 -3.46 16 13 C -0.10 -1.51 3.75 -10.27 -0.04 -1.55 16 14 H 0.13 1.24 8.14 -2.39 -0.02 1.22 16 15 C 0.13 2.11 5.50 86.38 0.47 2.59 16 16 N -0.70 -8.43 5.54 -465.56 -2.58 -11.01 16 17 C 0.55 10.26 7.80 86.92 0.68 10.93 16 18 O -0.54 -14.85 16.18 -3.66 -0.06 -14.91 16 19 C 0.18 3.08 6.75 40.50 0.27 3.35 16 20 C -0.27 -6.25 9.49 22.62 0.21 -6.04 16 21 C 0.41 10.61 6.97 25.58 0.18 10.78 16 22 O -0.54 -17.86 17.34 -5.10 -0.09 -17.94 16 23 C -0.23 -4.31 5.89 -19.99 -0.12 -4.43 16 24 C -0.05 -0.81 9.61 22.22 0.21 -0.60 16 25 C -0.15 -1.31 9.97 22.05 0.22 -1.09 16 26 C -0.05 -0.22 10.01 22.30 0.22 0.01 16 27 C -0.16 -0.88 9.91 22.40 0.22 -0.65 16 28 C 0.19 2.29 6.66 39.12 0.26 2.55 16 29 N -0.58 -5.50 5.32 -177.42 -0.94 -6.45 16 30 H 0.43 0.64 6.78 -92.71 -0.63 0.01 16 31 C -0.14 -3.08 7.39 31.12 0.23 -2.85 16 32 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 33 H 0.36 15.28 5.79 -92.71 -0.54 14.74 16 34 H 0.06 1.76 7.92 -2.39 -0.02 1.74 16 35 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.06 1.24 7.87 -2.39 -0.02 1.22 16 38 H 0.42 1.87 6.60 -92.71 -0.61 1.26 16 39 H 0.15 3.86 7.48 -2.91 -0.02 3.83 16 40 H 0.13 2.21 7.78 -2.91 -0.02 2.19 16 41 H 0.15 0.58 8.06 -2.91 -0.02 0.55 16 42 H 0.17 -0.32 8.06 -2.91 -0.02 -0.35 16 43 H 0.17 -0.30 8.06 -2.91 -0.02 -0.33 16 44 H 0.08 1.63 8.14 -2.38 -0.02 1.61 16 45 H 0.08 1.81 8.08 -2.39 -0.02 1.79 16 Total: -1.00 -83.43 379.12 0.90 -82.53 By element: Atomic # 1 Polarization: 17.91 SS G_CDS: -0.78 Total: 17.13 kcal Atomic # 6 Polarization: -5.48 SS G_CDS: 4.81 Total: -0.67 kcal Atomic # 7 Polarization: -107.73 SS G_CDS: -4.89 Total: -112.62 kcal Atomic # 8 Polarization: -32.71 SS G_CDS: -0.15 Total: -32.86 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 1.90 Total: 46.48 kcal Total: -83.43 0.90 -82.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086140920.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.552 kcal (2) G-P(sol) polarization free energy of solvation -83.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds