Wall clock time and date at job start Tue Mar 31 2020 23:41:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86800 * 119.99974 * 2 1 4 4 H 1.48502 * 109.47006 * 269.99872 * 3 2 1 5 5 H 1.48494 * 109.47187 * 29.99937 * 3 2 1 6 6 H 1.48496 * 109.46872 * 150.00064 * 3 2 1 7 7 C 1.38811 * 119.99532 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99595 * 196.59770 * 7 2 1 9 9 N 1.36928 * 120.00322 * 16.60538 * 7 2 1 10 10 C 1.46926 * 120.63446 * 208.29832 * 9 7 2 11 11 C 1.53196 * 108.76857 * 233.64039 * 10 9 7 12 12 C 1.53040 * 109.30879 * 305.34230 * 11 10 9 13 13 H 1.09005 * 109.46064 * 301.36912 * 12 11 10 14 14 N 1.46497 * 109.46104 * 181.40209 * 12 11 10 15 15 C 1.34776 * 120.00463 * 84.96614 * 14 12 11 16 16 O 1.21591 * 119.99674 * 0.02562 * 15 14 12 17 17 C 1.47562 * 120.00358 * 180.02562 * 15 14 12 18 18 C 1.38709 * 120.43295 * 354.34500 * 17 15 14 19 19 C 1.39002 * 120.74966 * 180.02562 * 18 17 15 20 20 C 1.36342 * 121.19336 * 0.02562 * 19 18 17 21 21 C 1.40354 * 119.93018 * 359.97438 * 20 19 18 22 22 C 1.40675 * 122.10899 * 179.97438 * 21 20 19 23 23 C 1.36258 * 118.67411 * 180.02562 * 22 21 20 24 24 N 1.32509 * 121.83691 * 0.02562 * 23 22 21 25 25 C 1.31314 * 122.72145 * 359.95482 * 24 23 22 26 26 C 1.40135 * 119.91657 * 0.04385 * 25 24 23 27 27 C 1.53036 * 109.52961 * 61.38501 * 12 11 10 28 28 H 1.08996 * 109.50008 * 178.64775 * 27 12 11 29 29 O 1.42899 * 109.49718 * 58.57698 * 27 12 11 30 30 C 1.46931 * 120.62958 * 28.32228 * 9 7 2 31 31 H 0.97008 * 119.99715 * 359.97438 * 1 2 3 32 32 H 1.09005 * 109.58341 * 353.41575 * 10 9 7 33 33 H 1.09000 * 109.58703 * 113.83632 * 10 9 7 34 34 H 1.08993 * 109.48651 * 185.39810 * 11 10 9 35 35 H 1.08996 * 109.50763 * 65.29771 * 11 10 9 36 36 H 0.97000 * 119.99946 * 264.97597 * 14 12 11 37 37 H 1.07995 * 119.62555 * 359.74971 * 18 17 15 38 38 H 1.08004 * 119.40237 * 180.02562 * 19 18 17 39 39 H 1.08002 * 120.03661 * 180.02562 * 20 19 18 40 40 H 1.08006 * 120.66824 * 0.05362 * 22 21 20 41 41 H 1.07999 * 119.08431 * 180.02562 * 23 22 21 42 42 H 1.08004 * 120.04234 * 180.02562 * 25 24 23 43 43 H 0.96705 * 113.99839 * 179.97438 * 29 27 12 44 44 H 1.08994 * 109.58689 * 6.57983 * 30 9 7 45 45 H 1.09003 * 109.70123 * 246.22695 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0564 -1.2216 0.2677 9 7 1.3684 -2.3634 -0.3378 10 6 1.8130 -3.6518 0.2109 11 6 2.0637 -4.6212 -0.9486 12 6 0.8060 -4.7083 -1.8163 13 1 -0.0327 -5.0455 -1.2073 14 7 1.0307 -5.6599 -2.9072 15 6 0.8269 -6.9768 -2.7054 16 8 0.4561 -7.3750 -1.6180 17 6 1.0537 -7.9355 -3.8041 18 6 1.3629 -7.4833 -5.0785 19 6 1.5773 -8.3804 -6.1183 20 6 1.4903 -9.7264 -5.9190 21 6 1.1797 -10.2270 -4.6451 22 6 1.0778 -11.6064 -4.3882 23 6 0.7720 -12.0152 -3.1249 24 7 0.5694 -11.1517 -2.1404 25 6 0.6488 -9.8518 -2.3090 26 6 0.9579 -9.3283 -3.5716 27 6 0.4905 -3.3291 -2.3998 28 1 -0.3913 -3.3966 -3.0369 29 8 1.6028 -2.8719 -3.1716 30 6 0.2222 -2.3448 -1.2569 31 1 -0.4850 0.8401 0.0004 32 1 2.7352 -3.5102 0.7745 33 1 1.0408 -4.0563 0.8653 34 1 2.3013 -5.6083 -0.5524 35 1 2.8971 -4.2602 -1.5512 36 1 1.3262 -5.3423 -3.7748 37 1 1.4335 -6.4221 -5.2659 38 1 1.8172 -8.0045 -7.1020 39 1 1.6609 -10.4067 -6.7403 40 1 1.2391 -12.3269 -5.1764 41 1 0.6925 -13.0727 -2.9201 42 1 0.4757 -9.1870 -1.4756 43 1 1.4721 -2.0017 -3.5727 44 1 0.0947 -1.3409 -1.6617 45 1 -0.6812 -2.6413 -0.7239 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090693491.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:41:44 Heat of formation + Delta-G solvation = 2.453738 kcal Electronic energy + Delta-G solvation = -29418.007816 eV Core-core repulsion = 25401.201874 eV Total energy + Delta-G solvation = -4016.805942 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.27939 -39.69435 -38.05439 -37.38099 -34.84670 -34.52266 -33.21609 -32.14662 -31.42706 -30.28823 -29.22554 -28.94753 -25.52645 -24.63816 -23.73011 -23.44515 -22.38113 -21.72881 -20.54219 -19.50308 -18.16215 -17.99602 -17.24943 -16.94658 -16.42789 -15.94395 -15.57722 -15.22845 -15.13970 -14.97611 -14.67940 -14.17368 -13.95659 -13.94499 -13.81278 -13.52528 -13.25678 -12.94927 -12.81046 -12.35949 -12.33408 -12.16611 -12.04368 -11.83807 -11.30059 -11.18325 -10.85078 -10.60914 -10.53452 -10.39377 -10.22898 -10.08441 -9.89042 -9.70473 -9.47978 -9.42740 -9.24375 -8.85003 -8.54482 -8.33532 -6.71446 -5.84723 -3.26172 -0.14435 0.61702 1.41260 2.51907 3.09366 3.17135 3.34055 3.41893 3.43356 3.89672 4.23453 4.30036 4.41022 4.44991 4.50579 4.61375 4.66308 4.76001 4.81459 5.02076 5.21645 5.30367 5.37661 5.41619 5.43877 5.45594 5.52126 5.65794 5.78566 5.86517 5.89906 5.98734 6.02314 6.15354 6.19941 6.35977 6.42073 6.49532 6.57989 6.75857 6.78954 6.93850 7.12849 7.38876 7.56915 7.75471 7.85931 8.16715 8.23192 8.39641 9.14774 9.77511 10.34427 11.24123 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.026121 B = 0.002470 C = 0.002337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.679605 B =11334.017233 C =11980.650841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C -0.001 4.001 3 Si 0.904 3.096 4 H -0.288 1.288 5 H -0.292 1.292 6 H -0.279 1.279 7 C -0.243 4.243 8 H 0.066 0.934 9 N -0.583 5.583 10 C 0.148 3.852 11 C -0.137 4.137 12 C 0.161 3.839 13 H 0.094 0.906 14 N -0.706 5.706 15 C 0.555 3.445 16 O -0.534 6.534 17 C -0.095 4.095 18 C -0.081 4.081 19 C -0.106 4.106 20 C -0.091 4.091 21 C -0.030 4.030 22 C -0.166 4.166 23 C 0.078 3.922 24 N -0.490 5.490 25 C 0.148 3.852 26 C -0.080 4.080 27 C 0.072 3.928 28 H 0.044 0.956 29 O -0.561 6.561 30 C 0.146 3.854 31 H 0.254 0.746 32 H 0.058 0.942 33 H 0.021 0.979 34 H 0.054 0.946 35 H 0.070 0.930 36 H 0.402 0.598 37 H 0.134 0.866 38 H 0.135 0.865 39 H 0.135 0.865 40 H 0.137 0.863 41 H 0.152 0.848 42 H 0.202 0.798 43 H 0.376 0.624 44 H 0.096 0.904 45 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.498 -18.128 -15.103 23.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.199 4.199 3 Si 0.734 3.266 4 H -0.215 1.215 5 H -0.218 1.218 6 H -0.205 1.205 7 C -0.373 4.373 8 H 0.084 0.916 9 N -0.305 5.305 10 C 0.021 3.979 11 C -0.177 4.177 12 C 0.058 3.942 13 H 0.112 0.888 14 N -0.356 5.356 15 C 0.342 3.658 16 O -0.414 6.414 17 C -0.100 4.100 18 C -0.100 4.100 19 C -0.125 4.125 20 C -0.109 4.109 21 C -0.036 4.036 22 C -0.186 4.186 23 C -0.065 4.065 24 N -0.199 5.199 25 C -0.022 4.022 26 C -0.083 4.083 27 C 0.011 3.989 28 H 0.062 0.938 29 O -0.366 6.366 30 C 0.018 3.982 31 H 0.064 0.936 32 H 0.076 0.924 33 H 0.039 0.961 34 H 0.073 0.927 35 H 0.088 0.912 36 H 0.238 0.762 37 H 0.152 0.848 38 H 0.152 0.848 39 H 0.152 0.848 40 H 0.155 0.845 41 H 0.169 0.831 42 H 0.218 0.782 43 H 0.223 0.777 44 H 0.114 0.886 45 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 1.184 -19.272 -13.312 23.453 hybrid contribution 0.507 1.855 -1.671 2.548 sum 1.692 -17.417 -14.983 23.037 Atomic orbital electron populations 1.70015 1.05201 1.25523 1.54509 1.25041 0.95314 0.98395 1.01124 0.86257 0.79123 0.83571 0.77638 1.21511 1.21849 1.20456 1.19194 0.92484 0.84583 1.40995 0.91635 1.43876 1.35196 1.01864 1.49545 1.20900 0.98002 0.86368 0.92619 1.22316 0.97380 0.99488 0.98513 1.21111 0.99607 0.86102 0.87389 0.88769 1.46163 1.67301 1.05808 1.16294 1.18100 0.77845 0.82592 0.87307 1.90572 1.47423 1.77482 1.25874 1.20010 1.02854 0.92747 0.94353 1.21490 0.96173 1.00518 0.91804 1.20917 0.99035 0.93125 0.99396 1.21150 0.98074 0.95982 0.95681 1.18167 0.98250 0.93581 0.93557 1.21856 1.03135 0.94548 0.99020 1.22335 0.95490 0.99792 0.88931 1.67696 1.13600 1.03977 1.34589 1.24687 0.89229 0.91470 0.96796 1.18880 1.01406 0.92507 0.95523 1.22853 0.87661 0.94068 0.94299 0.93808 1.86337 1.42049 1.38993 1.69234 1.21433 0.89723 0.98265 0.88743 0.93621 0.92373 0.96111 0.92713 0.91152 0.76228 0.84785 0.84756 0.84764 0.84492 0.83107 0.78204 0.77717 0.88594 0.95362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.27 11.19 55.49 0.62 -24.65 16 2 C 0.00 -0.02 4.92 -17.43 -0.09 -0.11 16 3 Si 0.90 21.08 29.59 -169.99 -5.03 16.05 16 4 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.24 -6.44 9.58 -15.06 -0.14 -6.58 16 8 H 0.07 1.74 7.88 -52.49 -0.41 1.33 16 9 N -0.58 -13.98 2.93 -172.31 -0.51 -14.49 16 10 C 0.15 3.12 6.52 -3.71 -0.02 3.10 16 11 C -0.14 -2.50 5.51 -26.61 -0.15 -2.64 16 12 C 0.16 2.71 2.20 -67.89 -0.15 2.56 16 13 H 0.09 1.72 7.58 -51.93 -0.39 1.32 16 14 N -0.71 -9.82 5.00 -54.80 -0.27 -10.10 16 15 C 0.55 8.06 7.70 -12.46 -0.10 7.96 16 16 O -0.53 -9.20 13.13 5.29 0.07 -9.13 16 17 C -0.09 -1.16 5.90 -104.66 -0.62 -1.78 16 18 C -0.08 -0.75 9.51 -39.12 -0.37 -1.12 16 19 C -0.11 -0.79 9.93 -39.98 -0.40 -1.19 16 20 C -0.09 -0.71 9.79 -39.47 -0.39 -1.10 16 21 C -0.03 -0.32 5.74 -106.84 -0.61 -0.93 16 22 C -0.17 -1.51 9.88 -39.37 -0.39 -1.90 16 23 C 0.08 0.82 11.07 -17.97 -0.20 0.62 16 24 N -0.49 -6.71 10.30 -13.22 -0.14 -6.84 16 25 C 0.15 2.10 10.49 -17.06 -0.18 1.92 16 26 C -0.08 -1.03 5.76 -106.59 -0.61 -1.65 16 27 C 0.07 1.24 3.38 -26.61 -0.09 1.15 16 28 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 29 O -0.56 -9.28 12.08 -35.23 -0.43 -9.70 16 30 C 0.15 3.20 4.94 -3.71 -0.02 3.18 16 31 H 0.25 6.87 8.31 -40.82 -0.34 6.53 16 32 H 0.06 1.21 7.93 -51.93 -0.41 0.80 16 33 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.07 1.35 7.61 -51.93 -0.40 0.96 16 36 H 0.40 4.76 6.32 -40.82 -0.26 4.50 16 37 H 0.13 0.98 6.42 -52.49 -0.34 0.64 16 38 H 0.13 0.61 8.06 -52.48 -0.42 0.19 16 39 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16 40 H 0.14 0.79 8.06 -52.48 -0.42 0.36 16 41 H 0.15 1.13 8.06 -52.49 -0.42 0.71 16 42 H 0.20 3.10 4.97 -52.49 -0.26 2.84 16 43 H 0.38 5.39 9.08 45.56 0.41 5.80 16 44 H 0.10 2.32 6.06 -51.93 -0.31 2.00 16 45 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 365.35 15.07 5.51 5.51 Total: -1.00 -31.78 365.35 -9.59 -41.37 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: -4.89 Total: 10.47 kcal Atomic # 6 Polarization: 6.03 SS G_CDS: -4.52 Total: 1.51 kcal Atomic # 7 Polarization: -55.78 SS G_CDS: -0.29 Total: -56.08 kcal Atomic # 8 Polarization: -18.47 SS G_CDS: -0.36 Total: -18.83 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.03 Total: 16.05 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.78 -9.59 -41.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090693491.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.820 kcal (2) G-P(sol) polarization free energy of solvation -31.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.367 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds