Wall clock time and date at job start Tue Mar 31 2020 23:41:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86800 * 119.99974 * 2 1 4 4 H 1.48502 * 109.47006 * 269.99872 * 3 2 1 5 5 H 1.48494 * 109.47187 * 29.99937 * 3 2 1 6 6 H 1.48496 * 109.46872 * 150.00064 * 3 2 1 7 7 C 1.38811 * 119.99532 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99595 * 196.59770 * 7 2 1 9 9 N 1.36928 * 120.00322 * 16.60538 * 7 2 1 10 10 C 1.46926 * 120.63446 * 208.29832 * 9 7 2 11 11 C 1.53196 * 108.76857 * 233.64039 * 10 9 7 12 12 C 1.53040 * 109.30879 * 305.34230 * 11 10 9 13 13 H 1.09005 * 109.46064 * 301.36912 * 12 11 10 14 14 N 1.46497 * 109.46104 * 181.40209 * 12 11 10 15 15 C 1.34776 * 120.00463 * 84.96614 * 14 12 11 16 16 O 1.21591 * 119.99674 * 0.02562 * 15 14 12 17 17 C 1.47562 * 120.00358 * 180.02562 * 15 14 12 18 18 C 1.38709 * 120.43295 * 354.34500 * 17 15 14 19 19 C 1.39002 * 120.74966 * 180.02562 * 18 17 15 20 20 C 1.36342 * 121.19336 * 0.02562 * 19 18 17 21 21 C 1.40354 * 119.93018 * 359.97438 * 20 19 18 22 22 C 1.40675 * 122.10899 * 179.97438 * 21 20 19 23 23 C 1.36258 * 118.67411 * 180.02562 * 22 21 20 24 24 N 1.32509 * 121.83691 * 0.02562 * 23 22 21 25 25 C 1.31314 * 122.72145 * 359.95482 * 24 23 22 26 26 C 1.40135 * 119.91657 * 0.04385 * 25 24 23 27 27 C 1.53036 * 109.52961 * 61.38501 * 12 11 10 28 28 H 1.08996 * 109.50008 * 178.64775 * 27 12 11 29 29 O 1.42899 * 109.49718 * 58.57698 * 27 12 11 30 30 C 1.46931 * 120.62958 * 28.32228 * 9 7 2 31 31 H 0.97008 * 119.99715 * 359.97438 * 1 2 3 32 32 H 1.09005 * 109.58341 * 353.41575 * 10 9 7 33 33 H 1.09000 * 109.58703 * 113.83632 * 10 9 7 34 34 H 1.08993 * 109.48651 * 185.39810 * 11 10 9 35 35 H 1.08996 * 109.50763 * 65.29771 * 11 10 9 36 36 H 0.97000 * 119.99946 * 264.97597 * 14 12 11 37 37 H 1.07995 * 119.62555 * 359.74971 * 18 17 15 38 38 H 1.08004 * 119.40237 * 180.02562 * 19 18 17 39 39 H 1.08002 * 120.03661 * 180.02562 * 20 19 18 40 40 H 1.08006 * 120.66824 * 0.05362 * 22 21 20 41 41 H 1.07999 * 119.08431 * 180.02562 * 23 22 21 42 42 H 1.08004 * 120.04234 * 180.02562 * 25 24 23 43 43 H 0.96705 * 113.99839 * 179.97438 * 29 27 12 44 44 H 1.08994 * 109.58689 * 6.57983 * 30 9 7 45 45 H 1.09003 * 109.70123 * 246.22695 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0564 -1.2216 0.2677 9 7 1.3684 -2.3634 -0.3378 10 6 1.8130 -3.6518 0.2109 11 6 2.0637 -4.6212 -0.9486 12 6 0.8060 -4.7083 -1.8163 13 1 -0.0327 -5.0455 -1.2073 14 7 1.0307 -5.6599 -2.9072 15 6 0.8269 -6.9768 -2.7054 16 8 0.4561 -7.3750 -1.6180 17 6 1.0537 -7.9355 -3.8041 18 6 1.3629 -7.4833 -5.0785 19 6 1.5773 -8.3804 -6.1183 20 6 1.4903 -9.7264 -5.9190 21 6 1.1797 -10.2270 -4.6451 22 6 1.0778 -11.6064 -4.3882 23 6 0.7720 -12.0152 -3.1249 24 7 0.5694 -11.1517 -2.1404 25 6 0.6488 -9.8518 -2.3090 26 6 0.9579 -9.3283 -3.5716 27 6 0.4905 -3.3291 -2.3998 28 1 -0.3913 -3.3966 -3.0369 29 8 1.6028 -2.8719 -3.1716 30 6 0.2222 -2.3448 -1.2569 31 1 -0.4850 0.8401 0.0004 32 1 2.7352 -3.5102 0.7745 33 1 1.0408 -4.0563 0.8653 34 1 2.3013 -5.6083 -0.5524 35 1 2.8971 -4.2602 -1.5512 36 1 1.3262 -5.3423 -3.7748 37 1 1.4335 -6.4221 -5.2659 38 1 1.8172 -8.0045 -7.1020 39 1 1.6609 -10.4067 -6.7403 40 1 1.2391 -12.3269 -5.1764 41 1 0.6925 -13.0727 -2.9201 42 1 0.4757 -9.1870 -1.4756 43 1 1.4721 -2.0017 -3.5727 44 1 0.0947 -1.3409 -1.6617 45 1 -0.6812 -2.6413 -0.7239 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090693491.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:41:43 Heat of formation + Delta-G solvation = -20.254373 kcal Electronic energy + Delta-G solvation = -29418.992514 eV Core-core repulsion = 25401.201874 eV Total energy + Delta-G solvation = -4017.790640 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.13678 -40.86379 -39.44632 -38.18815 -36.49914 -35.83731 -34.19793 -33.73319 -32.18094 -31.56592 -30.81185 -30.21702 -27.13566 -25.64686 -24.62071 -24.45408 -23.91401 -23.23733 -21.64909 -20.99693 -19.30730 -18.88697 -18.73482 -17.85128 -17.42813 -17.17568 -17.00196 -16.77372 -16.23960 -16.05516 -15.70367 -15.47407 -15.41857 -15.17704 -15.01301 -14.64258 -14.59338 -14.32165 -13.84712 -13.66232 -13.65104 -13.15690 -13.05986 -13.01386 -12.78586 -12.66890 -12.51867 -12.35152 -12.25894 -12.01469 -11.83621 -11.45729 -11.18782 -10.91604 -10.74002 -10.58454 -10.39001 -10.17909 -10.11771 -9.09671 -8.67404 -7.87464 -5.32251 -0.91827 -0.12297 0.57577 1.48760 1.50515 1.59269 1.70978 1.99775 2.22022 2.52069 3.07971 3.24563 3.38285 3.45715 3.53980 3.66637 3.71896 3.75468 3.84495 3.87579 3.95417 4.00979 4.19448 4.34293 4.39133 4.40133 4.57700 4.60182 4.68204 4.75107 4.80441 4.87009 4.89376 4.94575 5.05887 5.08976 5.17859 5.20320 5.34123 5.42235 5.46042 5.56692 5.65644 5.67649 5.79139 6.37538 6.48155 6.92091 7.00475 7.14720 7.15922 7.82591 8.35849 9.18956 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.026121 B = 0.002470 C = 0.002337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.679605 B =11334.017233 C =11980.650841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.046 4.046 3 Si 0.968 3.032 4 H -0.279 1.279 5 H -0.298 1.298 6 H -0.275 1.275 7 C -0.254 4.254 8 H 0.061 0.939 9 N -0.598 5.598 10 C 0.145 3.855 11 C -0.120 4.120 12 C 0.169 3.831 13 H 0.076 0.924 14 N -0.696 5.696 15 C 0.553 3.447 16 O -0.571 6.571 17 C -0.131 4.131 18 C -0.059 4.059 19 C -0.107 4.107 20 C -0.072 4.072 21 C -0.051 4.051 22 C -0.141 4.141 23 C 0.050 3.950 24 N -0.515 5.515 25 C 0.111 3.889 26 C -0.094 4.094 27 C 0.092 3.908 28 H 0.072 0.928 29 O -0.560 6.560 30 C 0.150 3.850 31 H 0.251 0.749 32 H 0.055 0.945 33 H 0.011 0.989 34 H 0.056 0.944 35 H 0.066 0.934 36 H 0.415 0.585 37 H 0.155 0.845 38 H 0.175 0.825 39 H 0.176 0.824 40 H 0.181 0.819 41 H 0.178 0.822 42 H 0.174 0.826 43 H 0.388 0.612 44 H 0.074 0.926 45 H 0.003 0.997 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.868 -19.387 -19.479 27.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.242 4.242 3 Si 0.796 3.204 4 H -0.206 1.206 5 H -0.225 1.225 6 H -0.200 1.200 7 C -0.384 4.384 8 H 0.079 0.921 9 N -0.321 5.321 10 C 0.019 3.981 11 C -0.160 4.160 12 C 0.064 3.936 13 H 0.094 0.906 14 N -0.346 5.346 15 C 0.342 3.658 16 O -0.452 6.452 17 C -0.136 4.136 18 C -0.078 4.078 19 C -0.126 4.126 20 C -0.089 4.089 21 C -0.057 4.057 22 C -0.160 4.160 23 C -0.093 4.093 24 N -0.224 5.224 25 C -0.058 4.058 26 C -0.097 4.097 27 C 0.031 3.969 28 H 0.089 0.911 29 O -0.367 6.367 30 C 0.023 3.977 31 H 0.060 0.940 32 H 0.073 0.927 33 H 0.029 0.971 34 H 0.075 0.925 35 H 0.085 0.915 36 H 0.253 0.747 37 H 0.172 0.828 38 H 0.193 0.807 39 H 0.193 0.807 40 H 0.198 0.802 41 H 0.195 0.805 42 H 0.190 0.810 43 H 0.236 0.764 44 H 0.092 0.908 45 H 0.021 0.979 Dipole moment (debyes) X Y Z Total from point charges 2.572 -20.539 -17.724 27.251 hybrid contribution 0.097 2.134 -0.370 2.168 sum 2.670 -18.405 -18.094 25.947 Atomic orbital electron populations 1.70165 1.06471 1.25897 1.55681 1.25716 0.96005 1.01168 1.01272 0.85266 0.77795 0.79558 0.77769 1.20569 1.22501 1.20037 1.19421 0.92502 0.85730 1.40750 0.92114 1.44094 1.35460 1.02071 1.50436 1.20965 0.97403 0.86086 0.93691 1.22076 0.97930 0.98474 0.97515 1.20756 0.98133 0.86730 0.87989 0.90562 1.45861 1.67561 1.05268 1.15943 1.18562 0.76786 0.82782 0.87634 1.90576 1.48929 1.78046 1.27683 1.19777 1.07056 0.91953 0.94842 1.21864 0.93038 1.02133 0.90764 1.21381 0.98070 0.92758 1.00409 1.21655 0.95094 0.96989 0.95186 1.18557 0.98980 0.93956 0.94189 1.22329 0.99675 0.94783 0.99254 1.22824 0.96615 1.00511 0.89350 1.67569 1.13983 1.04195 1.36650 1.24283 0.92494 0.91702 0.97368 1.18972 1.01696 0.93348 0.95634 1.22487 0.88970 0.92595 0.92858 0.91075 1.86311 1.41698 1.39908 1.68791 1.21327 0.88291 0.98406 0.89689 0.93998 0.92657 0.97102 0.92501 0.91521 0.74708 0.82785 0.80726 0.80664 0.80158 0.80535 0.80975 0.76356 0.90783 0.97850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -53.34 11.19 21.65 0.24 -53.10 16 2 C -0.05 -2.51 4.92 84.86 0.42 -2.09 16 3 Si 0.97 43.67 29.59 68.60 2.03 45.70 16 4 H -0.28 -12.13 7.11 99.48 0.71 -11.43 16 5 H -0.30 -13.68 7.11 99.48 0.71 -12.97 16 6 H -0.28 -12.13 7.11 99.48 0.71 -11.43 16 7 C -0.25 -13.69 9.58 84.03 0.81 -12.88 16 8 H 0.06 3.27 7.88 -2.91 -0.02 3.25 16 9 N -0.60 -29.47 2.93 -699.08 -2.05 -31.52 16 10 C 0.14 6.34 6.52 86.36 0.56 6.90 16 11 C -0.12 -4.46 5.51 30.67 0.17 -4.29 16 12 C 0.17 5.74 2.20 45.02 0.10 5.84 16 13 H 0.08 2.91 7.58 -2.38 -0.02 2.89 16 14 N -0.70 -18.99 5.00 -445.55 -2.23 -21.22 16 15 C 0.55 16.49 7.70 86.70 0.67 17.15 16 16 O -0.57 -21.19 13.13 -4.00 -0.05 -21.24 16 17 C -0.13 -3.14 5.90 -19.89 -0.12 -3.25 16 18 C -0.06 -0.90 9.51 22.57 0.21 -0.68 16 19 C -0.11 -1.04 9.93 22.01 0.22 -0.82 16 20 C -0.07 -0.75 9.79 22.34 0.22 -0.53 16 21 C -0.05 -0.94 5.74 -21.30 -0.12 -1.06 16 22 C -0.14 -2.12 9.88 22.40 0.22 -1.90 16 23 C 0.05 1.01 11.07 84.13 0.93 1.94 16 24 N -0.52 -14.77 10.30 -195.73 -2.02 -16.79 16 25 C 0.11 3.39 10.49 85.23 0.89 4.28 16 26 C -0.09 -2.40 5.76 -21.14 -0.12 -2.52 16 27 C 0.09 3.12 3.38 30.67 0.10 3.23 16 28 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 29 O -0.56 -17.63 12.08 -148.98 -1.80 -19.43 16 30 C 0.15 6.75 4.94 86.36 0.43 7.18 16 31 H 0.25 13.87 8.31 -92.70 -0.77 13.10 16 32 H 0.05 2.39 7.93 -2.38 -0.02 2.37 16 33 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 34 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 35 H 0.07 2.54 7.61 -2.39 -0.02 2.52 16 36 H 0.41 8.97 6.32 -92.71 -0.59 8.39 16 37 H 0.15 1.63 6.42 -2.91 -0.02 1.61 16 38 H 0.18 0.37 8.06 -2.91 -0.02 0.35 16 39 H 0.18 0.43 8.06 -2.91 -0.02 0.41 16 40 H 0.18 1.05 8.06 -2.91 -0.02 1.03 16 41 H 0.18 2.35 8.06 -2.91 -0.02 2.33 16 42 H 0.17 6.09 4.97 -2.93 -0.01 6.08 16 43 H 0.39 10.41 9.08 -74.05 -0.67 9.74 16 44 H 0.07 3.67 6.06 -2.39 -0.01 3.65 16 45 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 Total: -1.00 -73.97 365.35 -0.49 -74.47 By element: Atomic # 1 Polarization: 26.85 SS G_CDS: -0.21 Total: 26.64 kcal Atomic # 6 Polarization: 10.89 SS G_CDS: 5.59 Total: 16.48 kcal Atomic # 7 Polarization: -116.58 SS G_CDS: -6.05 Total: -122.63 kcal Atomic # 8 Polarization: -38.82 SS G_CDS: -1.85 Total: -40.67 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.70 kcal Total: -73.97 -0.49 -74.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090693491.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.212 kcal (2) G-P(sol) polarization free energy of solvation -73.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds