Wall clock time and date at job start Tue Mar 31 2020 23:49:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86804 * 119.99827 * 2 1 4 4 H 1.48499 * 109.46926 * 270.00042 * 3 2 1 5 5 H 1.48490 * 109.47389 * 30.00367 * 3 2 1 6 6 H 1.48498 * 109.46795 * 150.00485 * 3 2 1 7 7 C 1.38815 * 120.00109 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00046 * 197.35841 * 7 2 1 9 9 N 1.36937 * 119.99641 * 17.35898 * 7 2 1 10 10 C 1.46932 * 120.62748 * 207.66326 * 9 7 2 11 11 C 1.53184 * 108.76530 * 233.63913 * 10 9 7 12 12 C 1.53039 * 109.31477 * 305.34642 * 11 10 9 13 13 H 1.08993 * 109.46228 * 301.37150 * 12 11 10 14 14 N 1.46507 * 109.45984 * 181.39917 * 12 11 10 15 15 C 1.34771 * 119.99900 * 84.97407 * 14 12 11 16 16 O 1.21503 * 119.99963 * 359.97438 * 15 14 12 17 17 C 1.48278 * 120.00081 * 179.97438 * 15 14 12 18 18 C 1.40276 * 119.24062 * 179.97438 * 17 15 14 19 19 C 1.36504 * 119.81139 * 180.02562 * 18 17 15 20 20 C 1.40756 * 118.24769 * 0.02562 * 19 18 17 21 21 C 1.40421 * 121.27409 * 180.26674 * 20 19 18 22 22 C 1.36133 * 119.64581 * 180.28643 * 21 20 19 23 23 C 1.39428 * 120.91529 * 359.46218 * 22 21 20 24 24 C 1.36000 * 121.08497 * 0.25122 * 23 22 21 25 25 C 1.40817 * 119.73966 * 0.02562 * 24 23 22 26 26 N 1.31882 * 119.23506 * 0.02562 * 17 15 14 27 27 C 1.53042 * 109.52638 * 61.38640 * 12 11 10 28 28 H 1.09001 * 109.49738 * 178.67667 * 27 12 11 29 29 O 1.42904 * 109.50007 * 58.57926 * 27 12 11 30 30 C 1.46924 * 120.63474 * 27.69200 * 9 7 2 31 31 H 0.97002 * 119.99905 * 359.97438 * 1 2 3 32 32 H 1.08997 * 109.58263 * 353.42360 * 10 9 7 33 33 H 1.08994 * 109.58034 * 113.70153 * 10 9 7 34 34 H 1.08997 * 109.49066 * 185.39852 * 11 10 9 35 35 H 1.09004 * 109.51232 * 65.30645 * 11 10 9 36 36 H 0.97003 * 119.99927 * 264.96875 * 14 12 11 37 37 H 1.08000 * 120.09042 * 0.04785 * 18 17 15 38 38 H 1.08008 * 120.87397 * 180.02562 * 19 18 17 39 39 H 1.08000 * 120.17633 * 0.04522 * 21 20 19 40 40 H 1.08003 * 119.53611 * 179.73367 * 22 21 20 41 41 H 1.08002 * 119.46067 * 180.27537 * 23 22 21 42 42 H 1.08002 * 120.12849 * 180.02562 * 24 23 22 43 43 H 0.96693 * 114.00282 * 179.97438 * 29 27 12 44 44 H 1.09007 * 109.58380 * 6.58019 * 30 9 7 45 45 H 1.09001 * 109.70383 * 246.23055 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5477 1.4402 0.6999 7 6 2.0102 -1.2022 -0.0005 8 1 3.0533 -1.2236 0.2785 9 7 1.3723 -2.3609 -0.3549 10 6 1.8196 -3.6549 0.1784 11 6 2.0753 -4.6087 -0.9927 12 6 0.8197 -4.6884 -1.8640 13 1 -0.0193 -5.0356 -1.2611 14 7 1.0494 -5.6256 -2.9665 15 6 0.8488 -6.9454 -2.7817 16 8 0.4781 -7.3581 -1.7008 17 6 1.0807 -7.8939 -3.8976 18 6 0.8676 -9.2644 -3.6876 19 6 1.0780 -10.1479 -4.7066 20 6 1.5078 -9.6428 -5.9481 21 6 1.7382 -10.4939 -7.0410 22 6 2.1592 -9.9704 -8.2251 23 6 2.3547 -8.5978 -8.3723 24 6 2.1360 -7.7424 -7.3378 25 6 1.7055 -8.2450 -6.0949 26 7 1.4836 -7.4296 -5.0644 27 6 0.5014 -3.3028 -2.4306 28 1 -0.3792 -3.3647 -3.0700 29 8 1.6140 -2.8327 -3.1944 30 6 0.2280 -2.3339 -1.2760 31 1 -0.4850 0.8401 0.0004 32 1 2.7401 -3.5177 0.7457 33 1 1.0482 -4.0685 0.8280 34 1 2.3150 -5.6001 -0.6085 35 1 2.9090 -4.2378 -1.5890 36 1 1.3457 -5.2961 -3.8294 37 1 0.5376 -9.6193 -2.7224 38 1 0.9189 -11.2066 -4.5640 39 1 1.5861 -11.5585 -6.9416 40 1 2.3400 -10.6271 -9.0633 41 1 2.6848 -8.2073 -9.3236 42 1 2.2920 -6.6818 -7.4692 43 1 1.4817 -1.9580 -3.5847 44 1 0.0984 -1.3252 -1.6684 45 1 -0.6756 -2.6396 -0.7486 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090751566.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:49:54 Heat of formation + Delta-G solvation = -2.285701 kcal Electronic energy + Delta-G solvation = -29081.920982 eV Core-core repulsion = 25064.909522 eV Total energy + Delta-G solvation = -4017.011460 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.25135 -39.66662 -38.04939 -37.02039 -34.76679 -34.44584 -33.78983 -32.10184 -31.02171 -30.39295 -29.29448 -29.00430 -25.83498 -24.71895 -23.90510 -22.45007 -22.40601 -21.87623 -20.51699 -19.52166 -18.41579 -17.95761 -17.50397 -17.13044 -16.01402 -15.56790 -15.44525 -15.26298 -15.03711 -14.81072 -14.69337 -14.21622 -14.11198 -13.85117 -13.70519 -13.48177 -13.43080 -13.19389 -12.75075 -12.16462 -12.02969 -11.99742 -11.92799 -11.84678 -11.25530 -11.13137 -10.92982 -10.80769 -10.56511 -10.45976 -10.34951 -10.10693 -10.02731 -9.76188 -9.56921 -9.15624 -9.12543 -8.70511 -8.61298 -8.47836 -6.67548 -5.80298 -3.20736 -0.09738 0.36889 1.61728 2.23683 3.13445 3.18597 3.37680 3.45080 3.46685 3.84495 3.86831 4.20143 4.42102 4.46168 4.49136 4.61684 4.78398 4.80895 4.89055 5.00834 5.13034 5.31656 5.40167 5.42007 5.49326 5.58510 5.59436 5.66610 5.72198 5.96834 5.97509 6.03908 6.06251 6.13335 6.24236 6.29768 6.44390 6.48027 6.57366 6.81011 6.85277 7.00095 7.19038 7.37586 7.45442 7.78211 7.81160 8.27190 8.34607 8.44485 9.19137 9.82280 10.39113 11.28530 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.022301 B = 0.002398 C = 0.002240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.219718 B =11671.364417 C =12496.013553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C -0.002 4.002 3 Si 0.903 3.097 4 H -0.288 1.288 5 H -0.292 1.292 6 H -0.279 1.279 7 C -0.241 4.241 8 H 0.066 0.934 9 N -0.583 5.583 10 C 0.148 3.852 11 C -0.136 4.136 12 C 0.160 3.840 13 H 0.092 0.908 14 N -0.693 5.693 15 C 0.561 3.439 16 O -0.535 6.535 17 C 0.124 3.876 18 C -0.124 4.124 19 C -0.065 4.065 20 C -0.090 4.090 21 C -0.102 4.102 22 C -0.109 4.109 23 C -0.106 4.106 24 C -0.083 4.083 25 C 0.123 3.877 26 N -0.441 5.441 27 C 0.073 3.927 28 H 0.044 0.956 29 O -0.558 6.558 30 C 0.145 3.855 31 H 0.253 0.747 32 H 0.057 0.943 33 H 0.021 0.979 34 H 0.053 0.947 35 H 0.070 0.930 36 H 0.413 0.587 37 H 0.152 0.848 38 H 0.146 0.854 39 H 0.132 0.868 40 H 0.128 0.872 41 H 0.131 0.869 42 H 0.140 0.860 43 H 0.375 0.625 44 H 0.096 0.904 45 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.831 -20.326 -16.996 26.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.200 4.200 3 Si 0.734 3.266 4 H -0.215 1.215 5 H -0.219 1.219 6 H -0.205 1.205 7 C -0.371 4.371 8 H 0.084 0.916 9 N -0.305 5.305 10 C 0.021 3.979 11 C -0.176 4.176 12 C 0.056 3.944 13 H 0.110 0.890 14 N -0.343 5.343 15 C 0.345 3.655 16 O -0.411 6.411 17 C -0.030 4.030 18 C -0.145 4.145 19 C -0.090 4.090 20 C -0.092 4.092 21 C -0.120 4.120 22 C -0.128 4.128 23 C -0.126 4.126 24 C -0.102 4.102 25 C 0.000 4.000 26 N -0.153 5.153 27 C 0.012 3.988 28 H 0.062 0.938 29 O -0.364 6.364 30 C 0.018 3.982 31 H 0.063 0.937 32 H 0.076 0.924 33 H 0.038 0.962 34 H 0.072 0.928 35 H 0.089 0.911 36 H 0.249 0.751 37 H 0.170 0.830 38 H 0.163 0.837 39 H 0.149 0.851 40 H 0.146 0.854 41 H 0.149 0.851 42 H 0.157 0.843 43 H 0.222 0.778 44 H 0.114 0.886 45 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 1.868 -20.096 -16.170 25.861 hybrid contribution 0.135 0.644 -0.529 0.844 sum 2.003 -19.452 -16.698 25.714 Atomic orbital electron populations 1.70020 1.05199 1.25478 1.54560 1.25016 0.95296 0.98377 1.01273 0.86262 0.79112 0.83612 0.77646 1.21511 1.21895 1.20483 1.19197 0.92730 0.84745 1.40428 0.91627 1.43884 1.35406 1.01607 1.49610 1.20892 0.97929 0.86388 0.92644 1.22308 0.97508 0.99396 0.98432 1.21115 0.99446 0.86555 0.87259 0.88971 1.46109 1.65979 1.05561 1.16632 1.17937 0.78444 0.82682 0.86447 1.90783 1.47167 1.77957 1.25230 1.21521 0.96623 0.92960 0.91940 1.21790 0.98935 0.92540 1.01201 1.21465 0.95717 1.00539 0.91323 1.18995 1.00581 0.94343 0.95290 1.20998 0.99294 0.99477 0.92258 1.21001 0.98528 0.95488 0.97736 1.20942 0.99238 0.93317 0.99127 1.20933 0.97789 1.01001 0.90429 1.18877 0.98739 0.88999 0.93389 1.67871 1.09720 1.38684 0.99001 1.22830 0.87766 0.93827 0.94363 0.93828 1.86360 1.41750 1.38204 1.70051 1.21443 0.89663 0.98518 0.88560 0.93657 0.92407 0.96154 0.92835 0.91082 0.75086 0.83047 0.83675 0.85062 0.85385 0.85059 0.84251 0.77826 0.88566 0.95401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.76 11.19 55.49 0.62 -25.13 16 2 C 0.00 -0.05 4.91 -17.43 -0.09 -0.14 16 3 Si 0.90 21.50 29.59 -169.99 -5.03 16.47 16 4 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 7 C -0.24 -6.55 9.59 -15.06 -0.14 -6.70 16 8 H 0.07 1.78 7.89 -52.49 -0.41 1.37 16 9 N -0.58 -14.46 2.94 -172.33 -0.51 -14.97 16 10 C 0.15 3.24 6.52 -3.71 -0.02 3.22 16 11 C -0.14 -2.65 5.51 -26.62 -0.15 -2.80 16 12 C 0.16 2.94 2.20 -67.88 -0.15 2.79 16 13 H 0.09 1.80 7.58 -51.93 -0.39 1.40 16 14 N -0.69 -11.40 5.04 -54.57 -0.27 -11.67 16 15 C 0.56 9.22 7.78 -12.13 -0.09 9.12 16 16 O -0.53 -10.01 15.94 5.36 0.09 -9.92 16 17 C 0.12 1.73 6.75 -82.95 -0.56 1.17 16 18 C -0.12 -1.42 9.54 -39.44 -0.38 -1.80 16 19 C -0.06 -0.58 9.88 -39.26 -0.39 -0.97 16 20 C -0.09 -0.89 5.75 -106.71 -0.61 -1.50 16 21 C -0.10 -0.73 9.77 -39.52 -0.39 -1.11 16 22 C -0.11 -0.69 9.95 -39.90 -0.40 -1.09 16 23 C -0.11 -0.75 9.94 -39.94 -0.40 -1.14 16 24 C -0.08 -0.78 9.99 -39.41 -0.39 -1.17 16 25 C 0.12 1.44 6.61 -84.86 -0.56 0.88 16 26 N -0.44 -5.98 9.47 -7.54 -0.07 -6.05 16 27 C 0.07 1.37 3.38 -26.61 -0.09 1.28 16 28 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 29 O -0.56 -10.22 12.08 -35.23 -0.43 -10.65 16 30 C 0.15 3.33 4.95 -3.71 -0.02 3.31 16 31 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 32 H 0.06 1.24 7.93 -51.93 -0.41 0.83 16 33 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 35 H 0.07 1.46 7.61 -51.93 -0.40 1.07 16 36 H 0.41 6.50 7.56 -40.82 -0.31 6.19 16 37 H 0.15 1.61 7.60 -52.49 -0.40 1.21 16 38 H 0.15 0.80 8.06 -52.48 -0.42 0.38 16 39 H 0.13 0.59 8.06 -52.49 -0.42 0.17 16 40 H 0.13 0.47 8.06 -52.48 -0.42 0.05 16 41 H 0.13 0.59 8.06 -52.49 -0.42 0.17 16 42 H 0.14 1.19 8.06 -52.49 -0.42 0.77 16 43 H 0.37 5.95 9.08 45.56 0.41 6.37 16 44 H 0.10 2.41 6.04 -51.93 -0.31 2.10 16 45 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 LS Contribution 373.02 15.07 5.62 5.62 Total: -1.00 -32.30 373.02 -9.97 -42.27 By element: Atomic # 1 Polarization: 15.82 SS G_CDS: -5.16 Total: 10.66 kcal Atomic # 6 Polarization: 8.20 SS G_CDS: -4.82 Total: 3.37 kcal Atomic # 7 Polarization: -57.59 SS G_CDS: -0.23 Total: -57.82 kcal Atomic # 8 Polarization: -20.23 SS G_CDS: -0.34 Total: -20.57 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.03 Total: 16.47 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.30 -9.97 -42.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090751566.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.981 kcal (2) G-P(sol) polarization free energy of solvation -32.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds