Wall clock time and date at job start Tue Mar 31 2020 23:49:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86804 * 119.99827 * 2 1 4 4 H 1.48499 * 109.46926 * 270.00042 * 3 2 1 5 5 H 1.48490 * 109.47389 * 30.00367 * 3 2 1 6 6 H 1.48498 * 109.46795 * 150.00485 * 3 2 1 7 7 C 1.38815 * 120.00109 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00046 * 197.35841 * 7 2 1 9 9 N 1.36937 * 119.99641 * 17.35898 * 7 2 1 10 10 C 1.46932 * 120.62748 * 207.66326 * 9 7 2 11 11 C 1.53184 * 108.76530 * 233.63913 * 10 9 7 12 12 C 1.53039 * 109.31477 * 305.34642 * 11 10 9 13 13 H 1.08993 * 109.46228 * 301.37150 * 12 11 10 14 14 N 1.46507 * 109.45984 * 181.39917 * 12 11 10 15 15 C 1.34771 * 119.99900 * 84.97407 * 14 12 11 16 16 O 1.21503 * 119.99963 * 359.97438 * 15 14 12 17 17 C 1.48278 * 120.00081 * 179.97438 * 15 14 12 18 18 C 1.40276 * 119.24062 * 179.97438 * 17 15 14 19 19 C 1.36504 * 119.81139 * 180.02562 * 18 17 15 20 20 C 1.40756 * 118.24769 * 0.02562 * 19 18 17 21 21 C 1.40421 * 121.27409 * 180.26674 * 20 19 18 22 22 C 1.36133 * 119.64581 * 180.28643 * 21 20 19 23 23 C 1.39428 * 120.91529 * 359.46218 * 22 21 20 24 24 C 1.36000 * 121.08497 * 0.25122 * 23 22 21 25 25 C 1.40817 * 119.73966 * 0.02562 * 24 23 22 26 26 N 1.31882 * 119.23506 * 0.02562 * 17 15 14 27 27 C 1.53042 * 109.52638 * 61.38640 * 12 11 10 28 28 H 1.09001 * 109.49738 * 178.67667 * 27 12 11 29 29 O 1.42904 * 109.50007 * 58.57926 * 27 12 11 30 30 C 1.46924 * 120.63474 * 27.69200 * 9 7 2 31 31 H 0.97002 * 119.99905 * 359.97438 * 1 2 3 32 32 H 1.08997 * 109.58263 * 353.42360 * 10 9 7 33 33 H 1.08994 * 109.58034 * 113.70153 * 10 9 7 34 34 H 1.08997 * 109.49066 * 185.39852 * 11 10 9 35 35 H 1.09004 * 109.51232 * 65.30645 * 11 10 9 36 36 H 0.97003 * 119.99927 * 264.96875 * 14 12 11 37 37 H 1.08000 * 120.09042 * 0.04785 * 18 17 15 38 38 H 1.08008 * 120.87397 * 180.02562 * 19 18 17 39 39 H 1.08000 * 120.17633 * 0.04522 * 21 20 19 40 40 H 1.08003 * 119.53611 * 179.73367 * 22 21 20 41 41 H 1.08002 * 119.46067 * 180.27537 * 23 22 21 42 42 H 1.08002 * 120.12849 * 180.02562 * 24 23 22 43 43 H 0.96693 * 114.00282 * 179.97438 * 29 27 12 44 44 H 1.09007 * 109.58380 * 6.58019 * 30 9 7 45 45 H 1.09001 * 109.70383 * 246.23055 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5477 1.4402 0.6999 7 6 2.0102 -1.2022 -0.0005 8 1 3.0533 -1.2236 0.2785 9 7 1.3723 -2.3609 -0.3549 10 6 1.8196 -3.6549 0.1784 11 6 2.0753 -4.6087 -0.9927 12 6 0.8197 -4.6884 -1.8640 13 1 -0.0193 -5.0356 -1.2611 14 7 1.0494 -5.6256 -2.9665 15 6 0.8488 -6.9454 -2.7817 16 8 0.4781 -7.3581 -1.7008 17 6 1.0807 -7.8939 -3.8976 18 6 0.8676 -9.2644 -3.6876 19 6 1.0780 -10.1479 -4.7066 20 6 1.5078 -9.6428 -5.9481 21 6 1.7382 -10.4939 -7.0410 22 6 2.1592 -9.9704 -8.2251 23 6 2.3547 -8.5978 -8.3723 24 6 2.1360 -7.7424 -7.3378 25 6 1.7055 -8.2450 -6.0949 26 7 1.4836 -7.4296 -5.0644 27 6 0.5014 -3.3028 -2.4306 28 1 -0.3792 -3.3647 -3.0700 29 8 1.6140 -2.8327 -3.1944 30 6 0.2280 -2.3339 -1.2760 31 1 -0.4850 0.8401 0.0004 32 1 2.7401 -3.5177 0.7457 33 1 1.0482 -4.0685 0.8280 34 1 2.3150 -5.6001 -0.6085 35 1 2.9090 -4.2378 -1.5890 36 1 1.3457 -5.2961 -3.8294 37 1 0.5376 -9.6193 -2.7224 38 1 0.9189 -11.2066 -4.5640 39 1 1.5861 -11.5585 -6.9416 40 1 2.3400 -10.6271 -9.0633 41 1 2.6848 -8.2073 -9.3236 42 1 2.2920 -6.6818 -7.4692 43 1 1.4817 -1.9580 -3.5847 44 1 0.0984 -1.3252 -1.6684 45 1 -0.6756 -2.6396 -0.7486 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090751566.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:49:53 Heat of formation + Delta-G solvation = -25.041322 kcal Electronic energy + Delta-G solvation = -29082.907739 eV Core-core repulsion = 25064.909522 eV Total energy + Delta-G solvation = -4017.998218 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.08351 -40.94389 -39.52017 -37.84178 -36.51807 -35.85298 -34.63546 -33.87563 -31.98090 -31.20853 -30.89906 -30.58214 -27.31625 -26.01795 -24.72959 -24.06389 -23.51941 -23.08312 -21.78546 -21.12369 -19.49558 -19.02774 -18.80392 -18.19180 -17.48267 -17.10025 -16.79373 -16.47260 -16.34391 -15.77702 -15.57402 -15.47239 -15.38572 -15.24687 -15.10111 -14.91454 -14.50895 -14.24535 -14.03768 -13.81665 -13.67708 -13.16554 -12.81707 -12.71558 -12.67124 -12.61453 -12.45578 -12.36875 -12.27575 -12.04907 -11.84485 -11.64956 -11.55588 -11.35128 -10.79155 -10.61740 -10.58779 -10.14516 -9.81536 -9.27662 -8.69280 -7.87913 -5.31825 -0.86046 -0.35139 0.91736 1.36447 1.48398 1.49791 1.58750 1.95225 2.20092 2.51660 2.92092 3.07651 3.24158 3.37546 3.55506 3.61239 3.69575 3.82523 3.83000 3.89767 3.97755 4.15482 4.24886 4.31757 4.36016 4.38217 4.50916 4.57855 4.69807 4.77272 4.81811 4.91235 4.93278 5.03469 5.04733 5.09060 5.15607 5.37485 5.39265 5.42130 5.44233 5.49543 5.54388 5.64951 5.86280 6.33523 6.37257 6.67768 6.89038 7.05564 7.14085 7.81727 8.35092 9.18742 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.022301 B = 0.002398 C = 0.002240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.219718 B =11671.364417 C =12496.013553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.047 4.047 3 Si 0.968 3.032 4 H -0.281 1.281 5 H -0.297 1.297 6 H -0.274 1.274 7 C -0.254 4.254 8 H 0.062 0.938 9 N -0.598 5.598 10 C 0.146 3.854 11 C -0.120 4.120 12 C 0.166 3.834 13 H 0.081 0.919 14 N -0.689 5.689 15 C 0.562 3.438 16 O -0.564 6.564 17 C 0.097 3.903 18 C -0.142 4.142 19 C -0.047 4.047 20 C -0.101 4.101 21 C -0.101 4.101 22 C -0.104 4.104 23 C -0.093 4.093 24 C -0.111 4.111 25 C 0.096 3.904 26 N -0.461 5.461 27 C 0.090 3.910 28 H 0.066 0.934 29 O -0.561 6.561 30 C 0.152 3.848 31 H 0.251 0.749 32 H 0.057 0.943 33 H 0.016 0.984 34 H 0.059 0.941 35 H 0.062 0.938 36 H 0.417 0.583 37 H 0.152 0.848 38 H 0.186 0.814 39 H 0.165 0.835 40 H 0.164 0.836 41 H 0.160 0.840 42 H 0.137 0.863 43 H 0.386 0.614 44 H 0.074 0.926 45 H 0.007 0.993 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.848 -22.705 -19.993 30.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.243 4.243 3 Si 0.796 3.204 4 H -0.208 1.208 5 H -0.223 1.223 6 H -0.199 1.199 7 C -0.384 4.384 8 H 0.080 0.920 9 N -0.321 5.321 10 C 0.020 3.980 11 C -0.160 4.160 12 C 0.061 3.939 13 H 0.099 0.901 14 N -0.339 5.339 15 C 0.347 3.653 16 O -0.443 6.443 17 C -0.055 4.055 18 C -0.163 4.163 19 C -0.072 4.072 20 C -0.103 4.103 21 C -0.119 4.119 22 C -0.121 4.121 23 C -0.112 4.112 24 C -0.129 4.129 25 C -0.028 4.028 26 N -0.173 5.173 27 C 0.029 3.971 28 H 0.084 0.916 29 O -0.368 6.368 30 C 0.025 3.975 31 H 0.060 0.940 32 H 0.076 0.924 33 H 0.034 0.966 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.254 0.746 37 H 0.170 0.830 38 H 0.203 0.797 39 H 0.183 0.817 40 H 0.182 0.818 41 H 0.177 0.823 42 H 0.155 0.845 43 H 0.235 0.765 44 H 0.093 0.907 45 H 0.025 0.975 Dipole moment (debyes) X Y Z Total from point charges 2.899 -22.488 -19.192 29.706 hybrid contribution -0.139 1.264 0.242 1.295 sum 2.760 -21.224 -18.950 28.586 Atomic orbital electron populations 1.70162 1.06464 1.25912 1.55615 1.25707 0.96020 1.01186 1.01344 0.85259 0.77859 0.79555 0.77684 1.20800 1.22346 1.19935 1.19426 0.92770 0.85873 1.40318 0.92050 1.44102 1.35640 1.01949 1.50407 1.20964 0.97632 0.85869 0.93557 1.22081 0.97636 0.98783 0.97462 1.20851 0.98421 0.86930 0.87674 0.90138 1.45928 1.66290 1.05553 1.16089 1.18361 0.77299 0.82698 0.86918 1.90748 1.48465 1.78409 1.26667 1.21180 0.99433 0.93327 0.91585 1.21836 1.00408 0.91851 1.02237 1.21891 0.93266 1.01962 0.90081 1.19326 1.00457 0.93966 0.96594 1.21405 0.98267 1.00798 0.91421 1.21486 0.96582 0.95510 0.98545 1.21360 0.96889 0.93656 0.99313 1.21081 0.99585 1.01617 0.90634 1.19305 0.99730 0.90178 0.93549 1.67743 1.10303 1.39894 0.99360 1.22523 0.88774 0.92746 0.93063 0.91622 1.86339 1.41598 1.39136 1.69749 1.21309 0.88475 0.98370 0.89381 0.93981 0.92399 0.96609 0.92223 0.91964 0.74581 0.83005 0.79680 0.81737 0.81804 0.82277 0.84532 0.76502 0.90745 0.97466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.27 11.19 21.65 0.24 -54.02 16 2 C -0.05 -2.62 4.91 84.86 0.42 -2.20 16 3 Si 0.97 44.65 29.59 68.60 2.03 46.68 16 4 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 5 H -0.30 -13.81 7.11 99.48 0.71 -13.11 16 6 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 7 C -0.25 -14.01 9.59 84.03 0.81 -13.21 16 8 H 0.06 3.38 7.89 -2.91 -0.02 3.36 16 9 N -0.60 -30.44 2.94 -699.12 -2.05 -32.50 16 10 C 0.15 6.56 6.52 86.36 0.56 7.12 16 11 C -0.12 -4.74 5.51 30.67 0.17 -4.57 16 12 C 0.17 6.24 2.20 45.02 0.10 6.34 16 13 H 0.08 3.25 7.58 -2.39 -0.02 3.23 16 14 N -0.69 -23.18 5.04 -444.87 -2.24 -25.43 16 15 C 0.56 19.08 7.78 86.92 0.68 19.75 16 16 O -0.56 -21.89 15.94 -3.72 -0.06 -21.95 16 17 C 0.10 2.79 6.75 42.30 0.29 3.08 16 18 C -0.14 -3.23 9.54 22.36 0.21 -3.01 16 19 C -0.05 -0.74 9.88 22.48 0.22 -0.51 16 20 C -0.10 -1.76 5.75 -21.22 -0.12 -1.88 16 21 C -0.10 -1.00 9.77 22.31 0.22 -0.79 16 22 C -0.10 -0.83 9.95 22.07 0.22 -0.61 16 23 C -0.09 -0.99 9.94 22.04 0.22 -0.77 16 24 C -0.11 -1.95 9.99 22.38 0.22 -1.72 16 25 C 0.10 2.17 6.61 40.47 0.27 2.44 16 26 N -0.46 -12.71 9.47 -177.77 -1.68 -14.39 16 27 C 0.09 3.41 3.38 30.67 0.10 3.52 16 28 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 29 O -0.56 -20.48 12.08 -148.98 -1.80 -22.28 16 30 C 0.15 7.17 4.95 86.36 0.43 7.59 16 31 H 0.25 14.11 8.31 -92.71 -0.77 13.34 16 32 H 0.06 2.55 7.93 -2.39 -0.02 2.53 16 33 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 35 H 0.06 2.58 7.61 -2.38 -0.02 2.57 16 36 H 0.42 13.37 7.56 -92.71 -0.70 12.67 16 37 H 0.15 3.28 7.60 -2.91 -0.02 3.25 16 38 H 0.19 1.29 8.06 -2.91 -0.02 1.27 16 39 H 0.17 0.53 8.06 -2.91 -0.02 0.51 16 40 H 0.16 0.19 8.06 -2.91 -0.02 0.17 16 41 H 0.16 0.77 8.06 -2.91 -0.02 0.75 16 42 H 0.14 2.32 8.06 -2.91 -0.02 2.30 16 43 H 0.39 12.14 9.08 -74.06 -0.67 11.46 16 44 H 0.07 3.85 6.04 -2.38 -0.01 3.83 16 45 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 Total: -1.00 -72.27 373.02 -0.89 -73.16 By element: Atomic # 1 Polarization: 30.49 SS G_CDS: -0.33 Total: 30.15 kcal Atomic # 6 Polarization: 15.57 SS G_CDS: 5.01 Total: 20.57 kcal Atomic # 7 Polarization: -120.60 SS G_CDS: -5.73 Total: -126.34 kcal Atomic # 8 Polarization: -42.36 SS G_CDS: -1.86 Total: -44.22 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal Total: -72.27 -0.89 -73.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090751566.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.118 kcal (2) G-P(sol) polarization free energy of solvation -72.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds