Wall clock time and date at job start Wed Apr 1 2020 00:02:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86797 * 119.99954 * 2 1 4 4 H 1.48499 * 109.47346 * 240.00276 * 3 2 1 5 5 H 1.48504 * 109.47162 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47315 * 120.00106 * 3 2 1 7 7 C 1.38814 * 120.00232 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00204 * 180.02562 * 7 2 1 9 9 N 1.36935 * 119.99682 * 359.97438 * 7 2 1 10 10 C 1.50235 * 130.84365 * 0.03046 * 9 7 2 11 11 H 1.09006 * 116.45716 * 359.97407 * 10 9 7 12 12 C 1.55844 * 101.05414 * 233.94675 * 10 9 7 13 13 C 1.54859 * 103.44555 * 327.05927 * 12 10 9 14 14 C 1.50246 * 130.83792 * 180.02562 * 9 7 2 15 15 H 1.09002 * 115.85632 * 0.38133 * 14 9 7 16 16 C 1.56217 * 101.03675 * 234.07319 * 14 9 7 17 17 H 1.09001 * 110.74171 * 85.39135 * 16 14 9 18 18 N 1.46501 * 110.67822 * 208.53230 * 16 14 9 19 19 C 1.34778 * 119.99448 * 269.82575 * 18 16 14 20 20 O 1.21280 * 120.00541 * 359.97438 * 19 18 16 21 21 C 1.50703 * 119.99730 * 180.02562 * 19 18 16 22 22 C 1.50699 * 109.47436 * 180.02562 * 21 19 18 23 23 N 1.29747 * 126.29034 * 269.69018 * 22 21 19 24 24 O 1.41358 * 109.73801 * 179.88079 * 23 22 21 25 25 C 1.34814 * 109.33386 * 0.39342 * 24 23 22 26 26 C 1.38975 * 133.45886 * 179.78179 * 25 24 23 27 27 C 1.37802 * 119.80037 * 179.97438 * 26 25 24 28 28 C 1.38787 * 120.60097 * 359.97438 * 27 26 25 29 29 C 1.36623 * 120.51115 * 0.02562 * 28 27 26 30 30 C 1.39687 * 119.79169 * 0.02562 * 29 28 27 31 31 C 1.54853 * 103.27135 * 326.95052 * 16 14 9 32 32 H 0.96994 * 120.00110 * 359.97438 * 1 2 3 33 33 H 1.09003 * 110.62942 * 85.54437 * 12 10 9 34 34 H 1.08995 * 110.62740 * 208.57051 * 12 10 9 35 35 H 1.09002 * 110.62524 * 118.48472 * 13 12 10 36 36 H 1.08991 * 110.62529 * 241.35349 * 13 12 10 37 37 H 0.96997 * 120.00006 * 89.83265 * 18 16 14 38 38 H 1.09004 * 109.46879 * 299.99456 * 21 19 18 39 39 H 1.08997 * 109.47430 * 59.99901 * 21 19 18 40 40 H 1.08002 * 120.10163 * 359.96741 * 26 25 24 41 41 H 1.07994 * 119.70068 * 180.02562 * 27 26 25 42 42 H 1.07998 * 119.74404 * 180.02562 * 28 27 26 43 43 H 1.08002 * 120.10714 * 180.02562 * 29 28 27 44 44 H 1.09003 * 110.62517 * 241.54588 * 31 16 14 45 45 H 1.08999 * 110.63024 * 118.68624 * 31 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6964 1.2124 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 -0.1499 -2.6706 -0.0006 11 1 -0.8105 -1.8035 -0.0003 12 6 -0.2741 -3.6109 1.2360 13 6 1.0670 -4.3852 1.2357 14 6 1.8188 -3.8072 -0.0005 15 1 2.9014 -3.9343 0.0060 16 6 1.0671 -4.3850 -1.2421 17 1 1.6235 -4.1848 -2.1578 18 7 0.8332 -5.8224 -1.0825 19 6 1.7471 -6.7073 -1.5275 20 8 2.7630 -6.3138 -2.0605 21 6 1.5062 -8.1859 -1.3638 22 6 2.6698 -8.9513 -1.9395 23 7 2.7833 -9.3715 -3.1618 24 8 4.0154 -10.0456 -3.3223 25 6 4.6801 -10.0460 -2.1494 26 6 5.9070 -10.5594 -1.7462 27 6 6.3237 -10.3938 -0.4432 28 6 5.5293 -9.7178 0.4722 29 6 4.3199 -9.2056 0.0959 30 6 3.8784 -9.3634 -1.2199 31 6 -0.2736 -3.6103 -1.2382 32 1 -0.4850 0.8400 0.0004 33 1 -0.3814 -3.0292 2.1515 34 1 -1.1131 -4.2961 1.1146 35 1 1.6248 -4.1873 2.1511 36 1 0.8929 -5.4546 1.1171 37 1 0.0205 -6.1371 -0.6566 38 1 1.4047 -8.4224 -0.3046 39 1 0.5922 -8.4654 -1.8878 40 1 6.5319 -11.0866 -2.4519 41 1 7.2776 -10.7931 -0.1317 42 1 5.8697 -9.5957 1.4898 43 1 3.7071 -8.6803 0.8135 44 1 -1.1127 -4.2955 -1.1175 45 1 -0.3835 -3.0282 -2.1532 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001095714491.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:02:15 Heat of formation + Delta-G solvation = 80.507620 kcal Electronic energy + Delta-G solvation = -29389.179807 eV Core-core repulsion = 25375.758535 eV Total energy + Delta-G solvation = -4013.421272 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.98122 -40.08503 -38.49012 -37.94812 -34.71865 -34.02810 -32.39227 -30.97464 -30.33170 -30.05086 -29.21731 -28.94631 -27.30584 -24.25429 -23.54683 -22.93064 -21.94604 -21.16580 -20.14273 -19.56146 -18.61970 -17.79866 -17.45678 -17.29905 -16.87832 -15.97897 -15.78740 -15.44089 -15.37509 -14.89982 -14.52215 -14.31087 -14.06584 -13.88219 -13.72947 -13.47782 -12.72422 -12.54462 -12.49388 -12.37602 -12.19730 -11.81455 -11.54638 -11.51090 -11.40171 -11.26641 -11.09338 -10.95721 -10.93402 -10.85190 -10.27286 -10.14693 -9.93988 -9.78474 -9.42864 -9.29734 -9.19467 -8.96196 -8.86353 -8.59385 -6.95163 -5.75693 -3.13754 0.38143 1.01787 1.77250 2.29202 2.66998 3.21966 3.38770 3.41728 3.43396 3.45045 3.76764 4.00248 4.29915 4.42778 4.62780 4.67186 4.84448 4.88758 4.93557 5.03311 5.14106 5.16919 5.34695 5.45710 5.52901 5.59236 5.73941 5.80151 5.82591 5.90887 5.93706 6.01183 6.06219 6.06489 6.23798 6.27369 6.34833 6.48679 6.53549 6.60829 6.75520 6.90057 6.93930 7.03338 7.22223 7.48825 7.63662 7.76754 8.12120 8.33638 9.07530 9.70059 10.49773 11.34052 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.017409 B = 0.002603 C = 0.002490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.013827 B =10755.574142 C =11242.959869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.011 4.011 3 Si 0.917 3.083 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.286 1.286 7 C -0.212 4.212 8 H 0.079 0.921 9 N -0.589 5.589 10 C 0.156 3.844 11 H 0.153 0.847 12 C -0.138 4.138 13 C -0.130 4.130 14 C 0.129 3.871 15 H 0.084 0.916 16 C 0.127 3.873 17 H 0.085 0.915 18 N -0.707 5.707 19 C 0.514 3.486 20 O -0.530 6.530 21 C -0.078 4.078 22 C 0.158 3.842 23 N -0.276 5.276 24 O -0.092 6.092 25 C 0.084 3.916 26 C -0.128 4.128 27 C -0.062 4.062 28 C -0.150 4.150 29 C -0.034 4.034 30 C -0.184 4.184 31 C -0.141 4.141 32 H 0.255 0.745 33 H 0.055 0.945 34 H 0.045 0.955 35 H 0.051 0.949 36 H 0.050 0.950 37 H 0.397 0.603 38 H 0.124 0.876 39 H 0.121 0.879 40 H 0.138 0.862 41 H 0.139 0.861 42 H 0.135 0.865 43 H 0.134 0.866 44 H 0.055 0.945 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.253 -22.019 2.676 22.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.206 4.206 3 Si 0.747 3.253 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.340 4.340 8 H 0.096 0.904 9 N -0.309 5.309 10 C 0.049 3.951 11 H 0.170 0.830 12 C -0.177 4.177 13 C -0.170 4.170 14 C 0.020 3.980 15 H 0.102 0.898 16 C 0.021 3.979 17 H 0.103 0.897 18 N -0.358 5.358 19 C 0.297 3.703 20 O -0.406 6.406 21 C -0.119 4.119 22 C -0.024 4.024 23 N -0.019 5.019 24 O -0.102 6.102 25 C 0.030 3.970 26 C -0.148 4.148 27 C -0.082 4.082 28 C -0.169 4.169 29 C -0.054 4.054 30 C -0.187 4.187 31 C -0.181 4.181 32 H 0.065 0.935 33 H 0.074 0.926 34 H 0.064 0.936 35 H 0.070 0.930 36 H 0.068 0.932 37 H 0.232 0.768 38 H 0.142 0.858 39 H 0.139 0.861 40 H 0.156 0.844 41 H 0.157 0.843 42 H 0.153 0.847 43 H 0.152 0.848 44 H 0.073 0.927 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.523 -21.480 0.992 21.790 hybrid contribution 0.407 0.679 0.865 1.172 sum 3.931 -20.801 1.857 21.251 Atomic orbital electron populations 1.69446 1.04996 1.25165 1.57555 1.24696 0.95651 0.97517 1.02751 0.86111 0.78401 0.82830 0.77931 1.21172 1.21555 1.21231 1.19012 0.90352 0.81858 1.42814 0.90362 1.46451 1.01556 0.98795 1.84111 1.23713 0.87709 0.95056 0.88591 0.83017 1.23064 0.95074 0.98218 1.01356 1.22909 0.97704 0.97422 0.98965 1.23241 0.96136 0.86174 0.92495 0.89751 1.22760 0.98264 0.76369 1.00487 0.89717 1.46166 1.22128 1.07283 1.60253 1.19963 0.84210 0.86941 0.79197 1.90779 1.26986 1.80198 1.42665 1.20299 0.95353 0.92339 1.03887 1.23732 0.94425 0.93187 0.91059 1.79863 0.95449 1.10660 1.15925 1.89147 1.26581 1.66462 1.28059 1.20286 0.94446 0.96204 0.86043 1.20047 0.93216 1.04306 0.97192 1.21144 0.99346 0.95899 0.91768 1.20815 0.94757 1.00664 1.00635 1.20478 0.95903 0.95756 0.93310 1.20623 0.94828 1.06395 0.96901 1.23315 0.93914 0.98462 1.02453 0.93489 0.92616 0.93586 0.93022 0.93159 0.76830 0.85840 0.86093 0.84423 0.84320 0.84726 0.84838 0.92658 0.91589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.84 10.48 55.49 0.58 -25.26 16 2 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 3 Si 0.92 21.86 29.55 -169.99 -5.02 16.84 16 4 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.21 -5.79 10.59 -15.06 -0.16 -5.95 16 8 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 9 N -0.59 -14.32 2.99 -145.59 -0.43 -14.76 16 10 C 0.16 3.39 4.69 -62.78 -0.29 3.09 16 11 H 0.15 3.80 5.58 -51.93 -0.29 3.52 16 12 C -0.14 -2.50 6.44 -24.23 -0.16 -2.65 16 13 C -0.13 -2.23 6.32 -24.25 -0.15 -2.38 16 14 C 0.13 2.59 5.35 -62.61 -0.34 2.25 16 15 H 0.08 1.78 8.14 -51.93 -0.42 1.36 16 16 C 0.13 2.27 3.16 -65.23 -0.21 2.07 16 17 H 0.08 1.76 7.58 -51.93 -0.39 1.37 16 18 N -0.71 -9.41 3.73 -51.20 -0.19 -9.60 16 19 C 0.51 7.23 7.82 -10.98 -0.09 7.14 16 20 O -0.53 -10.17 15.70 5.56 0.09 -10.08 16 21 C -0.08 -0.76 6.30 -29.03 -0.18 -0.94 16 22 C 0.16 2.06 5.96 -80.12 -0.48 1.58 16 23 N -0.28 -4.21 12.81 34.91 0.45 -3.76 16 24 O -0.09 -1.39 12.06 7.70 0.09 -1.29 16 25 C 0.08 1.08 7.48 -38.47 -0.29 0.79 16 26 C -0.13 -1.22 10.07 -39.47 -0.40 -1.62 16 27 C -0.06 -0.47 10.02 -39.54 -0.40 -0.87 16 28 C -0.15 -1.21 9.97 -39.96 -0.40 -1.61 16 29 C -0.03 -0.34 10.05 -39.62 -0.40 -0.74 16 30 C -0.18 -2.29 6.32 -105.16 -0.67 -2.95 16 31 C -0.14 -2.58 6.19 -24.22 -0.15 -2.73 16 32 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 33 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 34 H 0.05 0.69 7.82 -51.93 -0.41 0.28 16 35 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 36 H 0.05 0.69 6.42 -51.93 -0.33 0.35 16 37 H 0.40 3.98 7.92 -40.82 -0.32 3.66 16 38 H 0.12 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.12 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.14 0.99 8.06 -52.49 -0.42 0.57 16 41 H 0.14 0.61 8.06 -52.49 -0.42 0.19 16 42 H 0.13 0.74 8.06 -52.49 -0.42 0.31 16 43 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 44 H 0.05 0.82 7.39 -51.93 -0.38 0.44 16 45 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 LS Contribution 370.81 15.07 5.59 5.59 Total: -1.00 -34.08 370.81 -9.60 -43.67 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: -5.90 Total: 4.55 kcal Atomic # 6 Polarization: -1.05 SS G_CDS: -4.84 Total: -5.89 kcal Atomic # 7 Polarization: -53.79 SS G_CDS: 0.40 Total: -53.38 kcal Atomic # 8 Polarization: -11.56 SS G_CDS: 0.18 Total: -11.38 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -34.08 -9.60 -43.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095714491.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.179 kcal (2) G-P(sol) polarization free energy of solvation -34.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.672 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds