Wall clock time and date at job start Wed Apr 1 2020 00:02:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86797 * 119.99954 * 2 1 4 4 H 1.48499 * 109.47346 * 240.00276 * 3 2 1 5 5 H 1.48504 * 109.47162 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47315 * 120.00106 * 3 2 1 7 7 C 1.38814 * 120.00232 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00204 * 180.02562 * 7 2 1 9 9 N 1.36935 * 119.99682 * 359.97438 * 7 2 1 10 10 C 1.50235 * 130.84365 * 0.03046 * 9 7 2 11 11 H 1.09006 * 116.45716 * 359.97407 * 10 9 7 12 12 C 1.55844 * 101.05414 * 233.94675 * 10 9 7 13 13 C 1.54859 * 103.44555 * 327.05927 * 12 10 9 14 14 C 1.50246 * 130.83792 * 180.02562 * 9 7 2 15 15 H 1.09002 * 115.85632 * 0.38133 * 14 9 7 16 16 C 1.56217 * 101.03675 * 234.07319 * 14 9 7 17 17 H 1.09001 * 110.74171 * 85.39135 * 16 14 9 18 18 N 1.46501 * 110.67822 * 208.53230 * 16 14 9 19 19 C 1.34778 * 119.99448 * 269.82575 * 18 16 14 20 20 O 1.21280 * 120.00541 * 359.97438 * 19 18 16 21 21 C 1.50703 * 119.99730 * 180.02562 * 19 18 16 22 22 C 1.50699 * 109.47436 * 180.02562 * 21 19 18 23 23 N 1.29747 * 126.29034 * 269.69018 * 22 21 19 24 24 O 1.41358 * 109.73801 * 179.88079 * 23 22 21 25 25 C 1.34814 * 109.33386 * 0.39342 * 24 23 22 26 26 C 1.38975 * 133.45886 * 179.78179 * 25 24 23 27 27 C 1.37802 * 119.80037 * 179.97438 * 26 25 24 28 28 C 1.38787 * 120.60097 * 359.97438 * 27 26 25 29 29 C 1.36623 * 120.51115 * 0.02562 * 28 27 26 30 30 C 1.39687 * 119.79169 * 0.02562 * 29 28 27 31 31 C 1.54853 * 103.27135 * 326.95052 * 16 14 9 32 32 H 0.96994 * 120.00110 * 359.97438 * 1 2 3 33 33 H 1.09003 * 110.62942 * 85.54437 * 12 10 9 34 34 H 1.08995 * 110.62740 * 208.57051 * 12 10 9 35 35 H 1.09002 * 110.62524 * 118.48472 * 13 12 10 36 36 H 1.08991 * 110.62529 * 241.35349 * 13 12 10 37 37 H 0.96997 * 120.00006 * 89.83265 * 18 16 14 38 38 H 1.09004 * 109.46879 * 299.99456 * 21 19 18 39 39 H 1.08997 * 109.47430 * 59.99901 * 21 19 18 40 40 H 1.08002 * 120.10163 * 359.96741 * 26 25 24 41 41 H 1.07994 * 119.70068 * 180.02562 * 27 26 25 42 42 H 1.07998 * 119.74404 * 180.02562 * 28 27 26 43 43 H 1.08002 * 120.10714 * 180.02562 * 29 28 27 44 44 H 1.09003 * 110.62517 * 241.54588 * 31 16 14 45 45 H 1.08999 * 110.63024 * 118.68624 * 31 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6964 1.2124 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 -0.1499 -2.6706 -0.0006 11 1 -0.8105 -1.8035 -0.0003 12 6 -0.2741 -3.6109 1.2360 13 6 1.0670 -4.3852 1.2357 14 6 1.8188 -3.8072 -0.0005 15 1 2.9014 -3.9343 0.0060 16 6 1.0671 -4.3850 -1.2421 17 1 1.6235 -4.1848 -2.1578 18 7 0.8332 -5.8224 -1.0825 19 6 1.7471 -6.7073 -1.5275 20 8 2.7630 -6.3138 -2.0605 21 6 1.5062 -8.1859 -1.3638 22 6 2.6698 -8.9513 -1.9395 23 7 2.7833 -9.3715 -3.1618 24 8 4.0154 -10.0456 -3.3223 25 6 4.6801 -10.0460 -2.1494 26 6 5.9070 -10.5594 -1.7462 27 6 6.3237 -10.3938 -0.4432 28 6 5.5293 -9.7178 0.4722 29 6 4.3199 -9.2056 0.0959 30 6 3.8784 -9.3634 -1.2199 31 6 -0.2736 -3.6103 -1.2382 32 1 -0.4850 0.8400 0.0004 33 1 -0.3814 -3.0292 2.1515 34 1 -1.1131 -4.2961 1.1146 35 1 1.6248 -4.1873 2.1511 36 1 0.8929 -5.4546 1.1171 37 1 0.0205 -6.1371 -0.6566 38 1 1.4047 -8.4224 -0.3046 39 1 0.5922 -8.4654 -1.8878 40 1 6.5319 -11.0866 -2.4519 41 1 7.2776 -10.7931 -0.1317 42 1 5.8697 -9.5957 1.4898 43 1 3.7071 -8.6803 0.8135 44 1 -1.1127 -4.2955 -1.1175 45 1 -0.3835 -3.0282 -2.1532 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001095714491.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:02:15 Heat of formation + Delta-G solvation = 58.660019 kcal Electronic energy + Delta-G solvation = -29390.127190 eV Core-core repulsion = 25375.758535 eV Total energy + Delta-G solvation = -4014.368655 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.83853 -41.45470 -39.86685 -38.67914 -35.67783 -35.45579 -34.22983 -31.72454 -31.23500 -31.02439 -30.96460 -30.34262 -28.76996 -26.11812 -24.30425 -23.69825 -23.18374 -22.48139 -21.44297 -20.96093 -20.11881 -18.97013 -18.55754 -18.26463 -18.16489 -17.01435 -16.79889 -16.72418 -16.57377 -16.37282 -15.99465 -15.56809 -15.17593 -14.92763 -14.76543 -14.39064 -14.09299 -13.92338 -13.51661 -13.35446 -13.26556 -13.19056 -13.10175 -12.87175 -12.78792 -12.58265 -12.36898 -12.35791 -12.24241 -12.06141 -12.01819 -11.88219 -11.55653 -11.19388 -11.04666 -10.88547 -10.75962 -10.01034 -9.96073 -9.61650 -8.85137 -7.80050 -5.18741 -0.39637 0.28249 0.91725 1.41496 1.45383 1.47448 1.53440 1.58524 2.18875 2.49944 2.65454 2.94699 3.19321 3.33502 3.51872 3.57590 3.74755 3.96418 4.05181 4.09242 4.13953 4.18535 4.24639 4.32726 4.37223 4.45338 4.48309 4.51209 4.63076 4.74551 4.79414 4.83928 4.93257 5.00417 5.11234 5.11502 5.17976 5.24080 5.29487 5.35359 5.41008 5.50394 5.55482 5.70886 5.77749 5.91048 6.15801 6.27724 6.59064 7.05952 7.28262 7.69513 8.55403 9.26642 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.017409 B = 0.002603 C = 0.002490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.013827 B =10755.574142 C =11242.959869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C -0.062 4.062 3 Si 0.973 3.027 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.226 4.226 8 H 0.069 0.931 9 N -0.620 5.620 10 C 0.138 3.862 11 H 0.116 0.884 12 C -0.126 4.126 13 C -0.114 4.114 14 C 0.119 3.881 15 H 0.064 0.936 16 C 0.146 3.854 17 H 0.046 0.954 18 N -0.689 5.689 19 C 0.516 3.484 20 O -0.587 6.587 21 C -0.067 4.067 22 C 0.156 3.844 23 N -0.317 5.317 24 O -0.122 6.122 25 C 0.049 3.951 26 C -0.140 4.140 27 C -0.051 4.051 28 C -0.148 4.148 29 C -0.044 4.044 30 C -0.208 4.208 31 C -0.127 4.127 32 H 0.249 0.751 33 H 0.034 0.966 34 H 0.092 0.908 35 H 0.043 0.957 36 H 0.097 0.903 37 H 0.421 0.579 38 H 0.173 0.827 39 H 0.152 0.848 40 H 0.153 0.847 41 H 0.177 0.823 42 H 0.167 0.833 43 H 0.156 0.844 44 H 0.101 0.899 45 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.952 -24.639 5.061 25.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.255 4.255 3 Si 0.802 3.198 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.207 1.207 7 C -0.355 4.355 8 H 0.087 0.913 9 N -0.342 5.342 10 C 0.032 3.968 11 H 0.134 0.866 12 C -0.165 4.165 13 C -0.153 4.153 14 C 0.011 3.989 15 H 0.082 0.918 16 C 0.039 3.961 17 H 0.065 0.935 18 N -0.342 5.342 19 C 0.302 3.698 20 O -0.467 6.467 21 C -0.107 4.107 22 C -0.025 4.025 23 N -0.062 5.062 24 O -0.132 6.132 25 C -0.004 4.004 26 C -0.160 4.160 27 C -0.070 4.070 28 C -0.165 4.165 29 C -0.064 4.064 30 C -0.211 4.211 31 C -0.167 4.167 32 H 0.058 0.942 33 H 0.053 0.947 34 H 0.110 0.890 35 H 0.062 0.938 36 H 0.115 0.885 37 H 0.260 0.740 38 H 0.190 0.810 39 H 0.170 0.830 40 H 0.171 0.829 41 H 0.194 0.806 42 H 0.185 0.815 43 H 0.174 0.826 44 H 0.119 0.881 45 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 3.198 -24.169 3.402 24.616 hybrid contribution 0.627 1.438 0.154 1.576 sum 3.825 -22.731 3.556 23.324 Atomic orbital electron populations 1.69681 1.05804 1.25120 1.58635 1.25383 0.96540 1.00094 1.03473 0.85230 0.77248 0.79514 0.77809 1.21226 1.21620 1.20661 1.19245 0.90437 0.83728 1.42134 0.91283 1.46728 1.03139 0.99535 1.84757 1.23639 0.85791 0.95409 0.91933 0.86638 1.22955 0.97262 0.97994 0.98277 1.22816 0.96199 0.99670 0.96631 1.23391 0.95736 0.84663 0.95118 0.91762 1.22126 0.97177 0.79073 0.97732 0.93518 1.45818 1.23079 1.05032 1.60282 1.20653 0.82976 0.88651 0.77522 1.90778 1.29500 1.81416 1.44976 1.20476 0.95169 0.87983 1.07109 1.24300 0.95362 0.92253 0.90582 1.79768 0.96268 1.12558 1.17629 1.89057 1.27126 1.67348 1.29654 1.20870 0.95919 0.97893 0.85735 1.20475 0.92425 1.04422 0.98646 1.21661 1.00426 0.94344 0.90592 1.21311 0.93905 0.99157 1.02165 1.20861 0.96986 0.95972 0.92549 1.20906 0.94885 1.07274 0.98083 1.23145 0.95564 0.98306 0.99663 0.94154 0.94742 0.88973 0.93799 0.88501 0.74014 0.80976 0.83045 0.82891 0.80579 0.81507 0.82636 0.88055 0.94128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.49 10.48 21.65 0.23 -54.26 16 2 C -0.06 -3.49 5.50 84.86 0.47 -3.02 16 3 Si 0.97 46.15 29.55 68.60 2.03 48.18 16 4 H -0.29 -13.42 7.11 99.48 0.71 -12.72 16 5 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 6 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 7 C -0.23 -12.77 10.59 84.03 0.89 -11.88 16 8 H 0.07 3.87 7.83 -2.91 -0.02 3.85 16 9 N -0.62 -30.79 2.99 -614.53 -1.83 -32.62 16 10 C 0.14 5.97 4.69 46.24 0.22 6.18 16 11 H 0.12 5.93 5.58 -2.38 -0.01 5.92 16 12 C -0.13 -4.21 6.44 32.21 0.21 -4.00 16 13 C -0.11 -3.54 6.32 32.20 0.20 -3.33 16 14 C 0.12 4.74 5.35 46.35 0.25 4.99 16 15 H 0.06 2.77 8.14 -2.39 -0.02 2.75 16 16 C 0.15 5.10 3.16 46.74 0.15 5.25 16 17 H 0.05 2.00 7.58 -2.39 -0.02 1.99 16 18 N -0.69 -15.96 3.73 -434.28 -1.62 -17.58 16 19 C 0.52 13.29 7.82 87.66 0.69 13.97 16 20 O -0.59 -22.53 15.70 -3.03 -0.05 -22.58 16 21 C -0.07 -1.07 6.30 29.10 0.18 -0.88 16 22 C 0.16 3.90 5.96 45.04 0.27 4.17 16 23 N -0.32 -9.87 12.81 -43.47 -0.56 -10.43 16 24 O -0.12 -3.88 12.06 29.93 0.36 -3.52 16 25 C 0.05 1.27 7.48 22.99 0.17 1.44 16 26 C -0.14 -2.52 10.07 22.34 0.23 -2.29 16 27 C -0.05 -0.62 10.02 22.30 0.22 -0.40 16 28 C -0.15 -1.84 9.97 22.02 0.22 -1.62 16 29 C -0.04 -0.74 10.05 22.24 0.22 -0.51 16 30 C -0.21 -4.94 6.32 -20.21 -0.13 -5.07 16 31 C -0.13 -4.46 6.19 32.22 0.20 -4.26 16 32 H 0.25 14.04 8.31 -92.71 -0.77 13.27 16 33 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.09 2.25 7.82 -2.39 -0.02 2.23 16 35 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.10 2.09 6.42 -2.39 -0.02 2.08 16 37 H 0.42 5.93 7.92 -92.71 -0.73 5.19 16 38 H 0.17 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.15 1.54 8.14 -2.39 -0.02 1.52 16 40 H 0.15 2.08 8.06 -2.91 -0.02 2.05 16 41 H 0.18 0.75 8.06 -2.91 -0.02 0.73 16 42 H 0.17 0.99 8.06 -2.91 -0.02 0.96 16 43 H 0.16 1.78 8.06 -2.91 -0.02 1.76 16 44 H 0.10 2.58 7.39 -2.39 -0.02 2.57 16 45 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 Total: -1.00 -83.31 370.81 3.51 -79.80 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: 0.30 Total: 14.29 kcal Atomic # 6 Polarization: -5.93 SS G_CDS: 4.65 Total: -1.28 kcal Atomic # 7 Polarization: -111.11 SS G_CDS: -3.78 Total: -114.89 kcal Atomic # 8 Polarization: -26.42 SS G_CDS: 0.31 Total: -26.10 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 2.03 Total: 48.18 kcal Total: -83.31 3.51 -79.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095714491.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.458 kcal (2) G-P(sol) polarization free energy of solvation -83.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.798 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds