Wall clock time and date at job start Wed Apr 1 2020 00:06:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86800 * 119.99797 * 2 1 4 4 H 1.48505 * 109.46753 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47025 * 299.99532 * 3 2 1 6 6 H 1.48500 * 109.47423 * 60.00024 * 3 2 1 7 7 C 1.38814 * 119.99931 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99672 * 170.57045 * 7 2 1 9 9 N 1.36933 * 120.00124 * 350.57001 * 7 2 1 10 10 C 1.48144 * 127.83725 * 164.33482 * 9 7 2 11 11 C 1.57687 * 104.67594 * 139.77609 * 10 9 7 12 12 H 1.08994 * 120.32627 * 244.63929 * 11 10 9 13 13 C 1.54283 * 103.38630 * 24.73255 * 11 10 9 14 14 H 1.09001 * 121.81694 * 220.67612 * 13 11 10 15 15 C 1.48148 * 127.83891 * 344.33889 * 9 7 2 16 16 C 1.52991 * 59.72555 * 112.63579 * 13 11 10 17 17 H 1.09000 * 117.44856 * 252.39657 * 16 13 11 18 18 N 1.46508 * 117.44429 * 107.64694 * 16 13 11 19 19 C 1.34771 * 120.00014 * 155.00222 * 18 16 13 20 20 O 1.21277 * 120.00321 * 359.97438 * 19 18 16 21 21 C 1.50701 * 119.99824 * 179.97438 * 19 18 16 22 22 C 1.53001 * 109.47224 * 179.97438 * 21 19 18 23 23 C 1.50701 * 109.47224 * 179.97438 * 22 21 19 24 24 N 1.29903 * 124.85403 * 90.34043 * 23 22 21 25 25 C 1.36062 * 108.80020 * 180.11941 * 24 23 22 26 26 C 1.39586 * 133.80730 * 179.88619 * 25 24 23 27 27 C 1.37683 * 119.72999 * 179.68497 * 26 25 24 28 28 C 1.38721 * 120.42144 * 359.97438 * 27 26 25 29 29 C 1.37910 * 120.47494 * 359.97438 * 28 27 26 30 30 C 1.38666 * 119.87570 * 0.02562 * 29 28 27 31 31 O 1.34229 * 124.85565 * 270.00482 * 23 22 21 32 32 H 0.97001 * 120.00129 * 0.02562 * 1 2 3 33 33 H 1.09008 * 110.40933 * 259.20335 * 10 9 7 34 34 H 1.09000 * 110.40957 * 21.51274 * 10 9 7 35 35 H 1.09001 * 110.40250 * 100.79748 * 15 9 7 36 36 H 1.08998 * 110.40797 * 338.36981 * 15 9 7 37 37 H 0.97002 * 119.99587 * 334.99939 * 18 16 13 38 38 H 1.09000 * 109.47235 * 60.00265 * 21 19 18 39 39 H 1.08997 * 109.47605 * 299.99725 * 21 19 18 40 40 H 1.09007 * 109.46523 * 60.00574 * 22 21 19 41 41 H 1.08996 * 109.47595 * 300.00866 * 22 21 19 42 42 H 1.08003 * 120.13493 * 359.66038 * 26 25 24 43 43 H 1.08003 * 119.78636 * 179.97438 * 27 26 25 44 44 H 1.07998 * 119.75641 * 179.97438 * 28 27 26 45 45 H 1.08003 * 120.05900 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0794 -1.2085 -0.1527 9 7 1.3395 -2.3800 0.1954 10 6 1.8185 -3.7547 -0.0790 11 6 1.2962 -4.6102 1.1383 12 1 2.0013 -5.0726 1.8288 13 6 0.0736 -3.8121 1.6372 14 1 -0.1318 -3.6800 2.6995 15 6 -0.0299 -2.5685 0.7282 16 6 -0.1129 -5.1898 0.9985 17 1 -0.5438 -5.2255 -0.0021 18 7 -0.4770 -6.3001 1.8823 19 6 -1.1310 -7.3692 1.3867 20 8 -1.4186 -7.4120 0.2093 21 6 -1.5050 -8.5115 2.2958 22 6 -2.2338 -9.5879 1.4888 23 6 -2.6072 -10.7306 2.3977 24 7 -3.7257 -10.8239 3.0517 25 6 -3.7188 -11.9797 3.7696 26 6 -4.6310 -12.5847 4.6358 27 6 -4.3220 -13.7941 5.2168 28 6 -3.1110 -14.4143 4.9462 29 6 -2.2007 -13.8287 4.0917 30 6 -2.4954 -12.6108 3.4977 31 8 -1.8344 -11.8005 2.6422 32 1 -0.4850 0.8400 -0.0004 33 1 1.4045 -4.1211 -1.0185 34 1 2.9078 -3.7786 -0.1098 35 1 -0.7326 -2.7496 -0.0851 36 1 -0.3351 -1.6978 1.3086 37 1 -0.2473 -6.2657 2.8241 38 1 -2.1591 -8.1466 3.0877 39 1 -0.6028 -8.9358 2.7363 40 1 -1.5800 -9.9530 0.6966 41 1 -3.1360 -9.1635 1.0485 42 1 -5.5751 -12.1059 4.8497 43 1 -5.0269 -14.2628 5.8875 44 1 -2.8795 -15.3627 5.4082 45 1 -1.2597 -14.3173 3.8861 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001115229790.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:06:42 Heat of formation + Delta-G solvation = 62.593556 kcal Electronic energy + Delta-G solvation = -27286.370984 eV Core-core repulsion = 23272.172900 eV Total energy + Delta-G solvation = -4014.198084 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.64371 -39.95108 -38.50782 -38.28473 -35.36602 -34.53216 -33.80508 -32.63771 -31.11756 -30.41388 -29.64132 -27.04917 -26.41610 -25.31721 -23.57082 -22.68892 -22.05631 -21.44803 -20.58075 -20.10131 -19.32178 -18.49412 -17.72731 -17.36295 -16.93296 -16.86889 -16.25111 -15.86810 -15.79150 -14.74538 -14.64819 -14.43345 -14.26811 -13.85206 -13.64264 -13.35338 -13.26911 -12.95987 -12.75441 -12.72489 -12.69781 -12.25908 -11.97760 -11.70426 -11.64529 -11.49697 -11.47284 -11.00083 -10.86246 -10.84852 -10.38233 -10.23827 -10.15302 -9.93476 -9.75196 -9.27332 -9.23716 -8.88295 -8.76528 -8.36996 -6.89056 -5.81870 -3.16127 0.23178 0.76416 1.96827 2.05613 2.52854 2.99999 3.19822 3.36711 3.42595 3.44405 3.45485 4.06750 4.28282 4.32666 4.41703 4.45048 4.54040 4.61360 4.68876 4.80130 4.81346 4.95341 5.10342 5.14620 5.33585 5.36606 5.38372 5.39847 5.53781 5.55832 5.60472 5.71657 5.78561 5.84013 5.85642 5.86408 6.11877 6.17136 6.20227 6.49174 6.66927 6.75526 6.86447 7.23103 7.32682 7.49007 7.51483 7.69849 8.17686 8.18187 9.08846 9.71661 10.48463 11.32649 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.040106 B = 0.001503 C = 0.001489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.976094 B =18626.296286 C =18795.170471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.005 4.005 3 Si 0.913 3.087 4 H -0.278 1.278 5 H -0.290 1.290 6 H -0.289 1.289 7 C -0.228 4.228 8 H 0.078 0.922 9 N -0.593 5.593 10 C 0.158 3.842 11 C -0.185 4.185 12 H 0.106 0.894 13 C -0.180 4.180 14 H 0.101 0.899 15 C 0.185 3.815 16 C 0.092 3.908 17 H 0.133 0.867 18 N -0.696 5.696 19 C 0.519 3.481 20 O -0.537 6.537 21 C -0.138 4.138 22 C -0.015 4.015 23 C 0.258 3.742 24 N -0.477 5.477 25 C 0.022 3.978 26 C -0.062 4.062 27 C -0.121 4.121 28 C -0.096 4.096 29 C -0.092 4.092 30 C 0.005 3.995 31 O -0.212 6.212 32 H 0.254 0.746 33 H 0.031 0.969 34 H 0.050 0.950 35 H 0.027 0.973 36 H 0.091 0.909 37 H 0.400 0.600 38 H 0.104 0.896 39 H 0.100 0.900 40 H 0.109 0.891 41 H 0.122 0.878 42 H 0.137 0.863 43 H 0.137 0.863 44 H 0.140 0.860 45 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.304 -28.827 12.005 31.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.202 4.202 3 Si 0.743 3.257 4 H -0.203 1.203 5 H -0.216 1.216 6 H -0.216 1.216 7 C -0.356 4.356 8 H 0.095 0.905 9 N -0.316 5.316 10 C 0.030 3.970 11 C -0.207 4.207 12 H 0.124 0.876 13 C -0.201 4.201 14 H 0.119 0.881 15 C 0.059 3.941 16 C -0.013 4.013 17 H 0.150 0.850 18 N -0.344 5.344 19 C 0.305 3.695 20 O -0.414 6.414 21 C -0.179 4.179 22 C -0.054 4.054 23 C 0.047 3.953 24 N -0.206 5.206 25 C -0.089 4.089 26 C -0.081 4.081 27 C -0.140 4.140 28 C -0.114 4.114 29 C -0.111 4.111 30 C -0.045 4.045 31 O -0.103 6.103 32 H 0.065 0.935 33 H 0.048 0.952 34 H 0.069 0.931 35 H 0.045 0.955 36 H 0.109 0.891 37 H 0.234 0.766 38 H 0.122 0.878 39 H 0.118 0.882 40 H 0.127 0.873 41 H 0.140 0.860 42 H 0.154 0.846 43 H 0.155 0.845 44 H 0.158 0.842 45 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -7.016 -28.137 11.094 31.049 hybrid contribution 1.106 0.335 0.738 1.371 sum -5.910 -27.802 11.832 30.787 Atomic orbital electron populations 1.69910 1.05069 1.25384 1.55679 1.24907 0.95642 0.98014 1.01680 0.86039 0.78882 0.83487 0.77291 1.20343 1.21646 1.21624 1.19036 0.90915 0.82283 1.43328 0.90453 1.45133 1.13722 0.99983 1.72786 1.21694 0.97209 0.85668 0.92388 1.25095 0.90378 1.02207 1.03006 0.87565 1.24635 1.02426 0.92476 1.00545 0.88089 1.21066 0.87021 0.92435 0.93563 1.21922 0.98518 0.85190 0.95687 0.84981 1.45386 1.58064 1.18654 1.12344 1.20255 0.77563 0.83009 0.88646 1.90738 1.53952 1.79801 1.16882 1.21623 1.02693 0.94355 0.99214 1.20016 1.04173 0.87179 0.93987 1.26516 0.84562 0.88352 0.95874 1.70696 1.20633 1.18479 1.10779 1.19949 0.95477 0.92666 1.00855 1.20366 0.98442 0.94695 0.94573 1.21074 0.97451 0.94972 1.00503 1.21038 0.93260 1.00042 0.97043 1.19917 1.01474 0.91565 0.98151 1.20371 0.93212 0.95189 0.95711 1.84526 1.44106 1.28931 1.52769 0.93549 0.95153 0.93133 0.95531 0.89130 0.76650 0.87754 0.88167 0.87307 0.85993 0.84562 0.84478 0.84190 0.84657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.64 10.88 55.49 0.60 -26.04 16 2 C -0.01 -0.15 5.40 -17.43 -0.09 -0.24 16 3 Si 0.91 21.78 29.56 -169.99 -5.03 16.75 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 7 C -0.23 -6.29 10.35 -15.06 -0.16 -6.45 16 8 H 0.08 2.07 7.85 -52.48 -0.41 1.66 16 9 N -0.59 -15.09 3.38 -166.73 -0.56 -15.65 16 10 C 0.16 3.29 7.09 -0.58 0.00 3.29 16 11 C -0.19 -3.20 7.34 -87.38 -0.64 -3.84 16 12 H 0.11 1.62 8.14 -51.93 -0.42 1.20 16 13 C -0.18 -3.30 6.98 -89.23 -0.62 -3.92 16 14 H 0.10 1.69 8.14 -51.93 -0.42 1.27 16 15 C 0.19 4.40 5.70 -2.41 -0.01 4.39 16 16 C 0.09 1.50 5.92 -67.93 -0.40 1.10 16 17 H 0.13 2.46 7.40 -51.93 -0.38 2.07 16 18 N -0.70 -8.55 5.56 -53.81 -0.30 -8.85 16 19 C 0.52 6.36 7.83 -10.99 -0.09 6.28 16 20 O -0.54 -8.69 15.55 5.56 0.09 -8.61 16 21 C -0.14 -1.14 5.68 -27.88 -0.16 -1.30 16 22 C -0.02 -0.14 5.13 -27.88 -0.14 -0.28 16 23 C 0.26 2.70 7.49 -13.09 -0.10 2.61 16 24 N -0.48 -5.66 11.34 -8.70 -0.10 -5.76 16 25 C 0.02 0.24 7.24 -84.71 -0.61 -0.37 16 26 C -0.06 -0.50 10.10 -39.28 -0.40 -0.90 16 27 C -0.12 -0.68 10.02 -39.61 -0.40 -1.08 16 28 C -0.10 -0.51 10.03 -39.52 -0.40 -0.91 16 29 C -0.09 -0.67 10.06 -39.54 -0.40 -1.06 16 30 C 0.01 0.06 7.43 -38.64 -0.29 -0.23 16 31 O -0.21 -2.28 10.77 3.62 0.04 -2.24 16 32 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 33 H 0.03 0.65 8.14 -51.92 -0.42 0.22 16 34 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 35 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.09 2.40 6.53 -51.93 -0.34 2.06 16 37 H 0.40 3.74 8.83 -40.82 -0.36 3.38 16 38 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.11 0.91 8.10 -51.93 -0.42 0.49 16 41 H 0.12 1.13 8.10 -51.93 -0.42 0.71 16 42 H 0.14 0.90 8.06 -52.48 -0.42 0.48 16 43 H 0.14 0.39 8.06 -52.48 -0.42 -0.04 16 44 H 0.14 0.33 8.06 -52.49 -0.42 -0.10 16 45 H 0.14 0.70 8.06 -52.48 -0.42 0.27 16 LS Contribution 382.48 15.07 5.76 5.76 Total: -1.00 -34.27 382.48 -10.52 -44.79 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: -6.12 Total: 2.77 kcal Atomic # 6 Polarization: 1.99 SS G_CDS: -4.91 Total: -2.92 kcal Atomic # 7 Polarization: -55.95 SS G_CDS: -0.36 Total: -56.30 kcal Atomic # 8 Polarization: -10.98 SS G_CDS: 0.13 Total: -10.85 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.03 Total: 16.75 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.27 -10.52 -44.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115229790.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.385 kcal (2) G-P(sol) polarization free energy of solvation -34.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.792 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds