Wall clock time and date at job start Wed Apr 1 2020 00:06:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86800 * 119.99797 * 2 1 4 4 H 1.48505 * 109.46753 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47025 * 299.99532 * 3 2 1 6 6 H 1.48500 * 109.47423 * 60.00024 * 3 2 1 7 7 C 1.38814 * 119.99931 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99672 * 170.57045 * 7 2 1 9 9 N 1.36933 * 120.00124 * 350.57001 * 7 2 1 10 10 C 1.48144 * 127.83725 * 164.33482 * 9 7 2 11 11 C 1.57687 * 104.67594 * 139.77609 * 10 9 7 12 12 H 1.08994 * 120.32627 * 244.63929 * 11 10 9 13 13 C 1.54283 * 103.38630 * 24.73255 * 11 10 9 14 14 H 1.09001 * 121.81694 * 220.67612 * 13 11 10 15 15 C 1.48148 * 127.83891 * 344.33889 * 9 7 2 16 16 C 1.52991 * 59.72555 * 112.63579 * 13 11 10 17 17 H 1.09000 * 117.44856 * 252.39657 * 16 13 11 18 18 N 1.46508 * 117.44429 * 107.64694 * 16 13 11 19 19 C 1.34771 * 120.00014 * 155.00222 * 18 16 13 20 20 O 1.21277 * 120.00321 * 359.97438 * 19 18 16 21 21 C 1.50701 * 119.99824 * 179.97438 * 19 18 16 22 22 C 1.53001 * 109.47224 * 179.97438 * 21 19 18 23 23 C 1.50701 * 109.47224 * 179.97438 * 22 21 19 24 24 N 1.29903 * 124.85403 * 90.34043 * 23 22 21 25 25 C 1.36062 * 108.80020 * 180.11941 * 24 23 22 26 26 C 1.39586 * 133.80730 * 179.88619 * 25 24 23 27 27 C 1.37683 * 119.72999 * 179.68497 * 26 25 24 28 28 C 1.38721 * 120.42144 * 359.97438 * 27 26 25 29 29 C 1.37910 * 120.47494 * 359.97438 * 28 27 26 30 30 C 1.38666 * 119.87570 * 0.02562 * 29 28 27 31 31 O 1.34229 * 124.85565 * 270.00482 * 23 22 21 32 32 H 0.97001 * 120.00129 * 0.02562 * 1 2 3 33 33 H 1.09008 * 110.40933 * 259.20335 * 10 9 7 34 34 H 1.09000 * 110.40957 * 21.51274 * 10 9 7 35 35 H 1.09001 * 110.40250 * 100.79748 * 15 9 7 36 36 H 1.08998 * 110.40797 * 338.36981 * 15 9 7 37 37 H 0.97002 * 119.99587 * 334.99939 * 18 16 13 38 38 H 1.09000 * 109.47235 * 60.00265 * 21 19 18 39 39 H 1.08997 * 109.47605 * 299.99725 * 21 19 18 40 40 H 1.09007 * 109.46523 * 60.00574 * 22 21 19 41 41 H 1.08996 * 109.47595 * 300.00866 * 22 21 19 42 42 H 1.08003 * 120.13493 * 359.66038 * 26 25 24 43 43 H 1.08003 * 119.78636 * 179.97438 * 27 26 25 44 44 H 1.07998 * 119.75641 * 179.97438 * 28 27 26 45 45 H 1.08003 * 120.05900 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0794 -1.2085 -0.1527 9 7 1.3395 -2.3800 0.1954 10 6 1.8185 -3.7547 -0.0790 11 6 1.2962 -4.6102 1.1383 12 1 2.0013 -5.0726 1.8288 13 6 0.0736 -3.8121 1.6372 14 1 -0.1318 -3.6800 2.6995 15 6 -0.0299 -2.5685 0.7282 16 6 -0.1129 -5.1898 0.9985 17 1 -0.5438 -5.2255 -0.0021 18 7 -0.4770 -6.3001 1.8823 19 6 -1.1310 -7.3692 1.3867 20 8 -1.4186 -7.4120 0.2093 21 6 -1.5050 -8.5115 2.2958 22 6 -2.2338 -9.5879 1.4888 23 6 -2.6072 -10.7306 2.3977 24 7 -3.7257 -10.8239 3.0517 25 6 -3.7188 -11.9797 3.7696 26 6 -4.6310 -12.5847 4.6358 27 6 -4.3220 -13.7941 5.2168 28 6 -3.1110 -14.4143 4.9462 29 6 -2.2007 -13.8287 4.0917 30 6 -2.4954 -12.6108 3.4977 31 8 -1.8344 -11.8005 2.6422 32 1 -0.4850 0.8400 -0.0004 33 1 1.4045 -4.1211 -1.0185 34 1 2.9078 -3.7786 -0.1098 35 1 -0.7326 -2.7496 -0.0851 36 1 -0.3351 -1.6978 1.3086 37 1 -0.2473 -6.2657 2.8241 38 1 -2.1591 -8.1466 3.0877 39 1 -0.6028 -8.9358 2.7363 40 1 -1.5800 -9.9530 0.6966 41 1 -3.1360 -9.1635 1.0485 42 1 -5.5751 -12.1059 4.8497 43 1 -5.0269 -14.2628 5.8875 44 1 -2.8795 -15.3627 5.4082 45 1 -1.2597 -14.3173 3.8861 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001115229790.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:06:41 Heat of formation + Delta-G solvation = 38.632836 kcal Electronic energy + Delta-G solvation = -27287.409999 eV Core-core repulsion = 23272.172900 eV Total energy + Delta-G solvation = -4015.237099 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -44.31930 -41.13384 -39.80210 -38.97465 -36.18862 -36.00074 -34.60549 -34.22231 -32.14524 -31.64249 -30.35646 -28.79884 -27.80415 -26.65486 -24.19380 -23.64269 -23.08535 -22.42995 -21.95532 -21.32314 -20.88500 -19.07565 -18.85898 -18.47835 -18.09608 -17.77903 -17.50372 -16.74505 -16.65268 -16.43305 -15.67480 -15.36195 -15.13396 -14.92479 -14.85623 -14.65491 -14.51332 -14.23309 -13.74856 -13.59738 -13.43408 -13.31626 -13.21056 -13.11927 -12.86218 -12.74444 -12.54717 -12.34928 -12.25075 -12.07792 -11.97672 -11.87885 -11.67446 -11.52759 -11.06925 -10.85239 -10.69229 -9.82882 -9.69960 -9.48649 -8.93030 -7.92718 -5.29465 -0.35822 0.20709 1.28979 1.38919 1.47172 1.47615 1.52296 1.58993 1.99295 2.48100 2.64532 2.73108 2.87438 3.28319 3.46654 3.56163 3.63541 3.82945 3.83316 3.92445 3.96941 4.00457 4.09382 4.17096 4.21437 4.29778 4.32251 4.42961 4.47038 4.53372 4.74412 4.81164 4.84340 4.90615 4.95433 4.98954 5.05346 5.18600 5.28194 5.32945 5.38218 5.42012 5.45281 5.55057 5.64332 5.71238 6.15990 6.50991 6.52790 6.99652 7.20833 7.66641 8.45099 9.21528 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.040106 B = 0.001503 C = 0.001489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.976094 B =18626.296286 C =18795.170471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.063 4.063 3 Si 0.982 3.018 4 H -0.263 1.263 5 H -0.293 1.293 6 H -0.290 1.290 7 C -0.241 4.241 8 H 0.083 0.917 9 N -0.618 5.618 10 C 0.148 3.852 11 C -0.165 4.165 12 H 0.142 0.858 13 C -0.182 4.182 14 H 0.125 0.875 15 C 0.189 3.811 16 C 0.115 3.885 17 H 0.106 0.894 18 N -0.683 5.683 19 C 0.521 3.479 20 O -0.579 6.579 21 C -0.122 4.122 22 C -0.011 4.011 23 C 0.254 3.746 24 N -0.503 5.503 25 C -0.012 4.012 26 C -0.080 4.080 27 C -0.110 4.110 28 C -0.083 4.083 29 C -0.102 4.102 30 C -0.020 4.020 31 O -0.221 6.221 32 H 0.250 0.750 33 H 0.021 0.979 34 H 0.061 0.939 35 H -0.005 1.005 36 H 0.057 0.943 37 H 0.419 0.581 38 H 0.120 0.880 39 H 0.127 0.873 40 H 0.111 0.889 41 H 0.113 0.887 42 H 0.143 0.857 43 H 0.171 0.829 44 H 0.179 0.821 45 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.259 -31.649 14.611 35.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.256 4.256 3 Si 0.809 3.191 4 H -0.187 1.187 5 H -0.220 1.220 6 H -0.216 1.216 7 C -0.369 4.369 8 H 0.101 0.899 9 N -0.341 5.341 10 C 0.022 3.978 11 C -0.186 4.186 12 H 0.159 0.841 13 C -0.203 4.203 14 H 0.143 0.857 15 C 0.063 3.937 16 C 0.008 3.992 17 H 0.124 0.876 18 N -0.333 5.333 19 C 0.309 3.691 20 O -0.458 6.458 21 C -0.162 4.162 22 C -0.049 4.049 23 C 0.042 3.958 24 N -0.233 5.233 25 C -0.123 4.123 26 C -0.099 4.099 27 C -0.129 4.129 28 C -0.101 4.101 29 C -0.121 4.121 30 C -0.069 4.069 31 O -0.113 6.113 32 H 0.059 0.941 33 H 0.039 0.961 34 H 0.080 0.920 35 H 0.013 0.987 36 H 0.076 0.924 37 H 0.257 0.743 38 H 0.138 0.862 39 H 0.145 0.855 40 H 0.130 0.870 41 H 0.131 0.869 42 H 0.160 0.840 43 H 0.189 0.811 44 H 0.196 0.804 45 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -5.952 -31.010 13.740 34.436 hybrid contribution 0.711 1.047 -0.083 1.268 sum -5.241 -29.963 13.657 33.343 Atomic orbital electron populations 1.70111 1.06619 1.25744 1.57136 1.25769 0.96480 1.01383 1.02001 0.84973 0.78340 0.79014 0.76732 1.18725 1.22002 1.21636 1.19437 0.91476 0.83490 1.42526 0.89903 1.45435 1.14178 1.01151 1.73381 1.21835 0.97936 0.84287 0.93718 1.25001 0.90873 1.01359 1.01331 0.84071 1.24302 1.04247 0.91130 1.00599 0.85690 1.20792 0.86061 0.93808 0.93068 1.21418 0.97495 0.85261 0.95046 0.87638 1.45191 1.57926 1.17394 1.12828 1.20905 0.76272 0.83392 0.88491 1.90735 1.55418 1.80615 1.19073 1.21550 1.04034 0.92370 0.98258 1.19971 1.03948 0.87054 0.93938 1.26594 0.84503 0.88653 0.96022 1.70632 1.21400 1.19617 1.11638 1.20357 0.96802 0.92960 1.02192 1.20684 0.98554 0.95864 0.94802 1.21534 0.98068 0.93708 0.99601 1.21565 0.92273 1.00842 0.95431 1.20362 1.02844 0.90680 0.98166 1.20863 0.93348 0.96278 0.96432 1.84486 1.44396 1.29184 1.53252 0.94089 0.96074 0.92016 0.98669 0.92428 0.74314 0.86183 0.85468 0.87037 0.86869 0.83960 0.81129 0.80407 0.82797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.43 10.88 21.65 0.24 -57.19 16 2 C -0.06 -3.57 5.40 84.86 0.46 -3.11 16 3 Si 0.98 45.46 29.56 68.60 2.03 47.49 16 4 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 5 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 6 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 7 C -0.24 -13.52 10.35 84.03 0.87 -12.65 16 8 H 0.08 4.43 7.85 -2.91 -0.02 4.41 16 9 N -0.62 -32.11 3.38 -681.42 -2.30 -34.41 16 10 C 0.15 6.17 7.09 87.72 0.62 6.80 16 11 C -0.16 -5.37 7.34 -8.70 -0.06 -5.43 16 12 H 0.14 3.71 8.14 -2.39 -0.02 3.69 16 13 C -0.18 -6.55 6.98 -9.89 -0.07 -6.62 16 14 H 0.13 3.92 8.14 -2.39 -0.02 3.90 16 15 C 0.19 9.34 5.70 86.53 0.49 9.84 16 16 C 0.12 3.62 5.92 44.99 0.27 3.88 16 17 H 0.11 4.00 7.40 -2.39 -0.02 3.99 16 18 N -0.68 -15.20 5.56 -442.54 -2.46 -17.66 16 19 C 0.52 11.99 7.83 87.66 0.69 12.68 16 20 O -0.58 -18.69 15.55 -3.02 -0.05 -18.74 16 21 C -0.12 -1.77 5.68 29.85 0.17 -1.60 16 22 C -0.01 -0.19 5.13 29.85 0.15 -0.03 16 23 C 0.25 5.30 7.49 88.39 0.66 5.96 16 24 N -0.50 -12.11 11.34 -296.27 -3.36 -15.47 16 25 C -0.01 -0.26 7.24 39.32 0.28 0.02 16 26 C -0.08 -1.21 10.10 22.46 0.23 -0.98 16 27 C -0.11 -0.91 10.02 22.25 0.22 -0.69 16 28 C -0.08 -0.60 10.03 22.31 0.22 -0.38 16 29 C -0.10 -1.26 10.06 22.29 0.22 -1.03 16 30 C -0.02 -0.39 7.43 22.88 0.17 -0.22 16 31 O -0.22 -4.72 10.77 -9.96 -0.11 -4.83 16 32 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 33 H 0.02 0.92 8.14 -2.38 -0.02 0.90 16 34 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 35 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 36 H 0.06 3.20 6.53 -2.39 -0.02 3.19 16 37 H 0.42 6.29 8.83 -92.71 -0.82 5.47 16 38 H 0.12 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.13 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.11 1.85 8.10 -2.38 -0.02 1.83 16 41 H 0.11 2.16 8.10 -2.39 -0.02 2.14 16 42 H 0.14 1.79 8.06 -2.91 -0.02 1.77 16 43 H 0.17 0.22 8.06 -2.91 -0.02 0.20 16 44 H 0.18 -0.09 8.06 -2.91 -0.02 -0.11 16 45 H 0.15 1.20 8.06 -2.91 -0.02 1.18 16 Total: -1.00 -79.18 382.48 -0.21 -79.39 By element: Atomic # 1 Polarization: 14.79 SS G_CDS: 0.21 Total: 15.00 kcal Atomic # 6 Polarization: 0.83 SS G_CDS: 5.60 Total: 6.43 kcal Atomic # 7 Polarization: -116.85 SS G_CDS: -7.89 Total: -124.73 kcal Atomic # 8 Polarization: -23.42 SS G_CDS: -0.15 Total: -23.57 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.49 kcal Total: -79.18 -0.21 -79.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115229790.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.018 kcal (2) G-P(sol) polarization free energy of solvation -79.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.385 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds