Wall clock time and date at job start Tue Mar 31 2020 23:37:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86796 * 119.99821 * 2 1 4 4 H 1.48504 * 109.46942 * 239.99380 * 3 2 1 5 5 H 1.48497 * 109.47631 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.46863 * 120.00262 * 3 2 1 7 7 C 1.37876 * 120.00000 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99950 * 180.02562 * 7 2 1 9 9 C 1.50708 * 119.99845 * 359.97438 * 7 2 1 10 10 N 1.46899 * 109.46893 * 180.02562 * 9 7 2 11 11 C 1.46902 * 110.99812 * 170.00180 * 10 9 7 12 12 C 1.53237 * 109.33861 * 187.25318 * 11 10 9 13 13 N 1.47079 * 108.52328 * 306.17036 * 12 11 10 14 14 C 1.34770 * 120.88410 * 231.18515 * 13 12 11 15 15 O 1.21571 * 120.00372 * 183.80793 * 14 13 12 16 16 C 1.47679 * 120.00139 * 3.80916 * 14 13 12 17 17 C 1.40586 * 120.28188 * 130.89306 * 16 14 13 18 18 N 1.30805 * 121.51716 * 179.97438 * 17 16 14 19 19 C 1.33898 * 121.72082 * 0.02562 * 18 17 16 20 20 C 1.40392 * 120.74191 * 180.02562 * 19 18 17 21 21 C 1.36235 * 120.10372 * 180.02562 * 20 19 18 22 22 C 1.39105 * 121.18752 * 359.66602 * 21 20 19 23 23 C 1.37777 * 120.60492 * 0.62631 * 22 21 20 24 24 O 1.35706 * 120.31370 * 179.70409 * 23 22 21 25 25 C 1.41080 * 119.37584 * 359.42396 * 23 22 21 26 26 C 1.39146 * 120.27929 * 310.90355 * 16 14 13 27 27 C 1.47088 * 118.23697 * 51.45965 * 13 12 11 28 28 C 1.46899 * 111.00139 * 294.30210 * 10 9 7 29 29 H 0.97003 * 119.99830 * 359.97438 * 1 2 3 30 30 H 1.08999 * 109.46710 * 60.00488 * 9 7 2 31 31 H 1.08995 * 109.47549 * 300.00376 * 9 7 2 32 32 H 1.09007 * 109.48808 * 67.29499 * 11 10 9 33 33 H 1.08996 * 109.51546 * 307.23049 * 11 10 9 34 34 H 1.09003 * 109.62738 * 186.46095 * 12 11 10 35 35 H 1.08996 * 109.62684 * 65.88224 * 12 11 10 36 36 H 1.07994 * 119.23955 * 0.02562 * 17 16 14 37 37 H 1.07999 * 119.95091 * 359.97438 * 20 19 18 38 38 H 1.08006 * 119.40703 * 179.97438 * 21 20 19 39 39 H 1.07996 * 119.69782 * 180.32159 * 22 21 20 40 40 H 0.96700 * 113.99676 * 269.71910 * 24 23 22 41 41 H 1.08000 * 121.00326 * 0.02562 * 26 16 14 42 42 H 1.08995 * 109.62841 * 68.24577 * 27 13 12 43 43 H 1.08996 * 109.62656 * 188.83423 * 27 13 12 44 44 H 1.08997 * 109.49448 * 292.71182 * 28 10 9 45 45 H 1.09003 * 109.49320 * 52.78867 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 7 2.2056 -3.6157 -0.0005 11 6 1.5211 -4.8935 0.2376 12 6 2.5636 -6.0032 0.4104 13 7 3.4615 -5.9863 -0.7544 14 6 3.7119 -7.1123 -1.4513 15 8 4.5097 -7.0949 -2.3684 16 6 3.0170 -8.3674 -1.1009 17 6 2.3941 -9.1356 -2.1001 18 7 1.7725 -10.2511 -1.8170 19 6 1.6976 -10.7169 -0.5639 20 6 1.0255 -11.9172 -0.2833 21 6 0.9569 -12.3788 0.9966 22 6 1.5501 -11.6842 2.0457 23 6 2.2143 -10.4993 1.8156 24 8 2.7858 -9.8235 2.8443 25 6 2.2999 -9.9981 0.4996 26 6 2.9732 -8.7996 0.2210 27 6 4.0838 -4.7090 -1.1349 28 6 2.9767 -3.6491 -1.2504 29 1 -0.4850 0.8401 0.0004 30 1 0.6241 -2.5567 -0.8903 31 1 0.6246 -2.5572 0.8896 32 1 0.8795 -5.1263 -0.6124 33 1 0.9156 -4.8194 1.1408 34 1 2.0630 -6.9694 0.4728 35 1 3.1392 -5.8265 1.3190 36 1 2.4303 -8.7973 -3.1250 37 1 0.5615 -12.4750 -1.0833 38 1 0.4366 -13.3033 1.1997 39 1 1.4853 -12.0749 3.0504 40 1 2.2005 -9.1787 3.2647 41 1 3.4426 -8.2290 1.0087 42 1 4.8026 -4.4103 -0.3719 43 1 4.5886 -4.8192 -2.0946 44 1 2.3149 -3.8992 -2.0796 45 1 3.4272 -2.6722 -1.4261 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001155533982.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:37:52 Heat of formation + Delta-G solvation = -0.893966 kcal Electronic energy + Delta-G solvation = -29177.011041 eV Core-core repulsion = 25160.059931 eV Total energy + Delta-G solvation = -4016.951110 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.49630 -40.01027 -38.48639 -37.56586 -36.47489 -34.66100 -33.37563 -32.41729 -31.30674 -30.71665 -29.67897 -28.28235 -25.87692 -24.83757 -24.53561 -23.31743 -22.36263 -22.21115 -21.00663 -19.46985 -19.17947 -17.89411 -17.60139 -17.01741 -16.60929 -16.39643 -15.89375 -15.40398 -15.27510 -14.92560 -14.74116 -14.55196 -14.47585 -14.24505 -13.88538 -13.74767 -13.63423 -13.46558 -12.87405 -12.55660 -12.44898 -12.33852 -12.05516 -11.86307 -11.36738 -11.30473 -11.26369 -10.94688 -10.84212 -10.74502 -10.62917 -10.60228 -10.23927 -9.93762 -9.71435 -9.34351 -9.21297 -8.63460 -8.50167 -8.46052 -7.42120 -6.10614 -4.12874 -0.17605 0.27771 1.41780 2.24264 2.68034 2.97100 3.29011 3.33544 3.36004 3.51236 3.68107 3.89266 4.17690 4.24346 4.34925 4.38923 4.47421 4.58358 4.69523 4.82824 5.01637 5.08424 5.22236 5.24959 5.28586 5.32747 5.39629 5.40380 5.52555 5.62498 5.70579 5.84013 5.85264 5.89783 5.91635 6.00151 6.09674 6.27045 6.30215 6.44683 6.60920 7.12196 7.14091 7.20586 7.33986 7.51443 7.68237 7.93502 8.03352 8.05694 8.40761 8.93965 9.51989 11.00132 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.018101 B = 0.002510 C = 0.002375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.507239 B =11152.970507 C =11788.871928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.057 3.943 3 Si 0.899 3.101 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.512 4.512 8 H 0.064 0.936 9 C 0.195 3.805 10 N -0.535 5.535 11 C 0.040 3.960 12 C 0.103 3.897 13 N -0.597 5.597 14 C 0.562 3.438 15 O -0.536 6.536 16 C -0.178 4.178 17 C 0.184 3.816 18 N -0.475 5.475 19 C 0.152 3.848 20 C -0.106 4.106 21 C -0.078 4.078 22 C -0.149 4.149 23 C 0.139 3.861 24 O -0.491 6.491 25 C -0.134 4.134 26 C -0.012 4.012 27 C 0.115 3.885 28 C 0.051 3.949 29 H 0.263 0.737 30 H -0.008 1.008 31 H 0.031 0.969 32 H 0.028 0.972 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.169 0.831 37 H 0.140 0.860 38 H 0.136 0.864 39 H 0.136 0.864 40 H 0.397 0.603 41 H 0.152 0.848 42 H 0.077 0.923 43 H 0.091 0.909 44 H 0.026 0.974 45 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.552 -23.478 4.009 23.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.727 3.273 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.550 4.550 8 H 0.082 0.918 9 C 0.070 3.930 10 N -0.260 5.260 11 C -0.089 4.089 12 C -0.020 4.020 13 N -0.330 5.330 14 C 0.349 3.651 15 O -0.414 6.414 16 C -0.183 4.183 17 C 0.011 3.989 18 N -0.182 5.182 19 C 0.031 3.969 20 C -0.125 4.125 21 C -0.098 4.098 22 C -0.167 4.167 23 C 0.093 3.907 24 O -0.302 6.302 25 C -0.137 4.137 26 C -0.038 4.038 27 C -0.006 4.006 28 C -0.078 4.078 29 H 0.072 0.928 30 H 0.009 0.991 31 H 0.049 0.951 32 H 0.046 0.954 33 H 0.100 0.900 34 H 0.099 0.901 35 H 0.099 0.901 36 H 0.186 0.814 37 H 0.158 0.842 38 H 0.154 0.846 39 H 0.154 0.846 40 H 0.255 0.745 41 H 0.170 0.830 42 H 0.095 0.905 43 H 0.109 0.891 44 H 0.044 0.956 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 2.190 -24.139 3.180 24.446 hybrid contribution -0.280 1.687 0.265 1.731 sum 1.910 -22.452 3.446 22.795 Atomic orbital electron populations 1.69945 1.06105 1.27039 1.50623 1.24989 0.94870 0.99385 0.95267 0.86545 0.79438 0.82632 0.78714 1.20204 1.21347 1.20112 1.21092 0.93460 0.89836 1.50614 0.91811 1.19720 0.89952 0.87136 0.96206 1.62106 1.27943 1.02477 1.33510 1.22388 0.94716 0.90798 1.01043 1.22219 0.92120 0.99380 0.88258 1.48167 1.46235 1.08566 1.29999 1.17999 0.81957 0.82928 0.82232 1.90799 1.35131 1.85074 1.30366 1.20994 1.03850 0.98388 0.95058 1.23008 0.88501 0.87973 0.99401 1.68115 1.17223 1.13327 1.19562 1.18902 0.95243 0.94682 0.88057 1.20816 0.99582 0.94558 0.97508 1.20798 0.97616 0.99584 0.91836 1.21430 0.98704 0.95976 1.00638 1.18367 0.93988 0.92561 0.85818 1.84760 1.41969 1.56841 1.46626 1.19071 1.02756 0.97045 0.94792 1.21919 0.92668 0.93407 0.95804 1.22040 0.95878 0.81027 1.01689 1.22442 0.95064 0.99195 0.91141 0.92773 0.99067 0.95052 0.95428 0.89968 0.90145 0.90145 0.81405 0.84233 0.84605 0.84579 0.74470 0.83046 0.90514 0.89114 0.95552 0.88256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.94 13.29 55.43 0.74 -25.20 16 2 C 0.06 1.55 5.46 -17.82 -0.10 1.46 16 3 Si 0.90 21.02 29.54 -169.99 -5.02 16.00 16 4 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 7 C -0.51 -13.70 8.41 -34.44 -0.29 -13.99 16 8 H 0.06 1.68 7.13 -52.49 -0.37 1.30 16 9 C 0.19 4.80 4.72 -4.97 -0.02 4.77 16 10 N -0.54 -10.62 4.62 -235.46 -1.09 -11.71 16 11 C 0.04 0.64 5.62 -3.70 -0.02 0.62 16 12 C 0.10 1.31 5.44 -3.60 -0.02 1.29 16 13 N -0.60 -8.64 3.00 -173.36 -0.52 -9.16 16 14 C 0.56 8.34 7.27 -12.41 -0.09 8.25 16 15 O -0.54 -9.51 16.50 5.30 0.09 -9.42 16 16 C -0.18 -2.23 5.06 -104.82 -0.53 -2.76 16 17 C 0.18 2.27 10.85 -17.10 -0.19 2.09 16 18 N -0.47 -5.88 10.30 -10.69 -0.11 -5.99 16 19 C 0.15 1.70 6.60 -84.80 -0.56 1.14 16 20 C -0.11 -0.91 9.95 -39.49 -0.39 -1.30 16 21 C -0.08 -0.51 9.93 -39.98 -0.40 -0.91 16 22 C -0.15 -1.04 9.95 -39.43 -0.39 -1.43 16 23 C 0.14 1.19 6.72 -38.67 -0.26 0.93 16 24 O -0.49 -3.58 12.76 -18.82 -0.24 -3.82 16 25 C -0.13 -1.40 5.75 -106.70 -0.61 -2.02 16 26 C -0.01 -0.13 7.00 -38.49 -0.27 -0.39 16 27 C 0.12 1.79 6.62 -3.36 -0.02 1.77 16 28 C 0.05 0.93 5.47 -3.46 -0.02 0.91 16 29 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 30 H -0.01 -0.23 8.12 -51.93 -0.42 -0.65 16 31 H 0.03 0.82 7.97 -51.93 -0.41 0.41 16 32 H 0.03 0.47 8.14 -51.92 -0.42 0.04 16 33 H 0.08 1.25 7.99 -51.93 -0.41 0.83 16 34 H 0.08 0.85 4.65 -51.93 -0.24 0.61 16 35 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.17 1.87 8.06 -52.49 -0.42 1.45 16 37 H 0.14 1.00 8.06 -52.49 -0.42 0.58 16 38 H 0.14 0.50 8.06 -52.48 -0.42 0.07 16 39 H 0.14 0.67 8.06 -52.49 -0.42 0.25 16 40 H 0.40 1.14 9.06 45.56 0.41 1.55 16 41 H 0.15 1.42 6.60 -52.49 -0.35 1.07 16 42 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 43 H 0.09 1.40 7.08 -51.93 -0.37 1.04 16 44 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 45 H 0.10 1.95 6.67 -51.93 -0.35 1.61 16 LS Contribution 370.53 15.07 5.58 5.58 Total: -1.00 -33.38 370.53 -9.79 -43.16 By element: Atomic # 1 Polarization: 5.18 SS G_CDS: -5.03 Total: 0.15 kcal Atomic # 6 Polarization: 4.59 SS G_CDS: -4.18 Total: 0.41 kcal Atomic # 7 Polarization: -51.08 SS G_CDS: -0.98 Total: -52.06 kcal Atomic # 8 Polarization: -13.09 SS G_CDS: -0.15 Total: -13.25 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.38 -9.79 -43.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155533982.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.271 kcal (2) G-P(sol) polarization free energy of solvation -33.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds