Wall clock time and date at job start Tue Mar 31 2020 23:37:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86796 * 119.99821 * 2 1 4 4 H 1.48504 * 109.46942 * 239.99380 * 3 2 1 5 5 H 1.48497 * 109.47631 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.46863 * 120.00262 * 3 2 1 7 7 C 1.37876 * 120.00000 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99950 * 180.02562 * 7 2 1 9 9 C 1.50708 * 119.99845 * 359.97438 * 7 2 1 10 10 N 1.46899 * 109.46893 * 180.02562 * 9 7 2 11 11 C 1.46902 * 110.99812 * 170.00180 * 10 9 7 12 12 C 1.53237 * 109.33861 * 187.25318 * 11 10 9 13 13 N 1.47079 * 108.52328 * 306.17036 * 12 11 10 14 14 C 1.34770 * 120.88410 * 231.18515 * 13 12 11 15 15 O 1.21571 * 120.00372 * 183.80793 * 14 13 12 16 16 C 1.47679 * 120.00139 * 3.80916 * 14 13 12 17 17 C 1.40586 * 120.28188 * 130.89306 * 16 14 13 18 18 N 1.30805 * 121.51716 * 179.97438 * 17 16 14 19 19 C 1.33898 * 121.72082 * 0.02562 * 18 17 16 20 20 C 1.40392 * 120.74191 * 180.02562 * 19 18 17 21 21 C 1.36235 * 120.10372 * 180.02562 * 20 19 18 22 22 C 1.39105 * 121.18752 * 359.66602 * 21 20 19 23 23 C 1.37777 * 120.60492 * 0.62631 * 22 21 20 24 24 O 1.35706 * 120.31370 * 179.70409 * 23 22 21 25 25 C 1.41080 * 119.37584 * 359.42396 * 23 22 21 26 26 C 1.39146 * 120.27929 * 310.90355 * 16 14 13 27 27 C 1.47088 * 118.23697 * 51.45965 * 13 12 11 28 28 C 1.46899 * 111.00139 * 294.30210 * 10 9 7 29 29 H 0.97003 * 119.99830 * 359.97438 * 1 2 3 30 30 H 1.08999 * 109.46710 * 60.00488 * 9 7 2 31 31 H 1.08995 * 109.47549 * 300.00376 * 9 7 2 32 32 H 1.09007 * 109.48808 * 67.29499 * 11 10 9 33 33 H 1.08996 * 109.51546 * 307.23049 * 11 10 9 34 34 H 1.09003 * 109.62738 * 186.46095 * 12 11 10 35 35 H 1.08996 * 109.62684 * 65.88224 * 12 11 10 36 36 H 1.07994 * 119.23955 * 0.02562 * 17 16 14 37 37 H 1.07999 * 119.95091 * 359.97438 * 20 19 18 38 38 H 1.08006 * 119.40703 * 179.97438 * 21 20 19 39 39 H 1.07996 * 119.69782 * 180.32159 * 22 21 20 40 40 H 0.96700 * 113.99676 * 269.71910 * 24 23 22 41 41 H 1.08000 * 121.00326 * 0.02562 * 26 16 14 42 42 H 1.08995 * 109.62841 * 68.24577 * 27 13 12 43 43 H 1.08996 * 109.62656 * 188.83423 * 27 13 12 44 44 H 1.08997 * 109.49448 * 292.71182 * 28 10 9 45 45 H 1.09003 * 109.49320 * 52.78867 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 7 2.2056 -3.6157 -0.0005 11 6 1.5211 -4.8935 0.2376 12 6 2.5636 -6.0032 0.4104 13 7 3.4615 -5.9863 -0.7544 14 6 3.7119 -7.1123 -1.4513 15 8 4.5097 -7.0949 -2.3684 16 6 3.0170 -8.3674 -1.1009 17 6 2.3941 -9.1356 -2.1001 18 7 1.7725 -10.2511 -1.8170 19 6 1.6976 -10.7169 -0.5639 20 6 1.0255 -11.9172 -0.2833 21 6 0.9569 -12.3788 0.9966 22 6 1.5501 -11.6842 2.0457 23 6 2.2143 -10.4993 1.8156 24 8 2.7858 -9.8235 2.8443 25 6 2.2999 -9.9981 0.4996 26 6 2.9732 -8.7996 0.2210 27 6 4.0838 -4.7090 -1.1349 28 6 2.9767 -3.6491 -1.2504 29 1 -0.4850 0.8401 0.0004 30 1 0.6241 -2.5567 -0.8903 31 1 0.6246 -2.5572 0.8896 32 1 0.8795 -5.1263 -0.6124 33 1 0.9156 -4.8194 1.1408 34 1 2.0630 -6.9694 0.4728 35 1 3.1392 -5.8265 1.3190 36 1 2.4303 -8.7973 -3.1250 37 1 0.5615 -12.4750 -1.0833 38 1 0.4366 -13.3033 1.1997 39 1 1.4853 -12.0749 3.0504 40 1 2.2005 -9.1787 3.2647 41 1 3.4426 -8.2290 1.0087 42 1 4.8026 -4.4103 -0.3719 43 1 4.5886 -4.8192 -2.0946 44 1 2.3149 -3.8992 -2.0796 45 1 3.4272 -2.6722 -1.4261 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155533982.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:37:51 Heat of formation + Delta-G solvation = -25.368572 kcal Electronic energy + Delta-G solvation = -29178.072339 eV Core-core repulsion = 25160.059931 eV Total energy + Delta-G solvation = -4018.012408 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.32171 -41.08764 -39.31169 -38.82856 -37.13285 -36.12907 -34.60084 -34.05142 -32.31209 -31.73884 -30.49506 -29.83898 -27.44473 -25.79999 -25.47689 -24.51294 -23.86754 -23.06607 -22.35237 -20.59217 -19.92976 -18.84210 -18.46712 -18.44563 -17.73407 -17.62823 -16.86172 -16.71039 -16.37835 -16.07566 -15.98847 -15.61937 -15.47990 -15.34368 -15.25049 -15.06763 -14.61350 -14.42175 -14.24218 -14.02551 -13.55079 -13.20861 -13.11243 -12.99043 -12.80194 -12.61009 -12.54288 -12.44014 -12.37166 -12.22809 -11.91671 -11.77804 -11.53117 -11.39025 -11.13872 -10.68042 -10.61151 -10.01082 -9.84765 -9.14186 -9.10079 -8.21204 -6.31076 -0.90541 -0.48953 0.70111 1.32876 1.42896 1.45019 1.52839 1.67610 1.94838 2.40272 2.84173 3.00929 3.08527 3.11440 3.19787 3.28930 3.52172 3.59840 3.75818 3.87099 3.92496 3.99847 4.16993 4.20032 4.25388 4.29794 4.37353 4.52957 4.57923 4.64715 4.65927 4.76269 4.79030 4.90340 4.95322 4.96223 5.13953 5.19676 5.24046 5.28224 5.34574 5.36774 5.62990 5.68997 6.01469 6.12013 6.27280 6.54673 6.66797 6.76617 6.84208 6.87695 7.38853 8.89710 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.018101 B = 0.002510 C = 0.002375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.507239 B =11152.970507 C =11788.871928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.003 3.997 3 Si 0.967 3.033 4 H -0.269 1.269 5 H -0.286 1.286 6 H -0.266 1.266 7 C -0.524 4.524 8 H 0.067 0.933 9 C 0.209 3.791 10 N -0.536 5.536 11 C 0.037 3.963 12 C 0.114 3.886 13 N -0.600 5.600 14 C 0.567 3.433 15 O -0.571 6.571 16 C -0.197 4.197 17 C 0.172 3.828 18 N -0.491 5.491 19 C 0.133 3.867 20 C -0.125 4.125 21 C -0.059 4.059 22 C -0.143 4.143 23 C 0.137 3.863 24 O -0.497 6.497 25 C -0.148 4.148 26 C 0.000 4.000 27 C 0.127 3.873 28 C 0.055 3.945 29 H 0.264 0.736 30 H -0.043 1.043 31 H 0.012 0.988 32 H 0.015 0.985 33 H 0.092 0.908 34 H 0.106 0.894 35 H 0.101 0.899 36 H 0.167 0.833 37 H 0.148 0.852 38 H 0.172 0.828 39 H 0.164 0.836 40 H 0.417 0.583 41 H 0.168 0.832 42 H 0.089 0.911 43 H 0.090 0.910 44 H 0.011 0.989 45 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.138 -25.350 6.365 26.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.195 4.195 3 Si 0.792 3.208 4 H -0.194 1.194 5 H -0.211 1.211 6 H -0.191 1.191 7 C -0.562 4.562 8 H 0.085 0.915 9 C 0.083 3.917 10 N -0.261 5.261 11 C -0.092 4.092 12 C -0.008 4.008 13 N -0.331 5.331 14 C 0.356 3.644 15 O -0.451 6.451 16 C -0.203 4.203 17 C -0.002 4.002 18 N -0.199 5.199 19 C 0.012 3.988 20 C -0.143 4.143 21 C -0.078 4.078 22 C -0.161 4.161 23 C 0.090 3.910 24 O -0.311 6.311 25 C -0.151 4.151 26 C -0.026 4.026 27 C 0.005 3.995 28 C -0.074 4.074 29 H 0.073 0.927 30 H -0.025 1.025 31 H 0.030 0.970 32 H 0.033 0.967 33 H 0.111 0.889 34 H 0.124 0.876 35 H 0.119 0.881 36 H 0.184 0.816 37 H 0.166 0.834 38 H 0.189 0.811 39 H 0.181 0.819 40 H 0.278 0.722 41 H 0.185 0.815 42 H 0.107 0.893 43 H 0.109 0.891 44 H 0.029 0.971 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 2.772 -26.028 5.560 26.759 hybrid contribution -0.548 2.097 -0.364 2.197 sum 2.224 -23.931 5.197 24.589 Atomic orbital electron populations 1.70075 1.07741 1.27969 1.51723 1.25886 0.95685 1.03148 0.94814 0.85465 0.78156 0.78026 0.79163 1.19401 1.21136 1.19087 1.21437 0.93769 0.90897 1.50099 0.91499 1.19366 0.89986 0.88725 0.93586 1.62030 1.27006 1.02951 1.34066 1.22526 0.95734 0.89945 1.00959 1.22277 0.91250 0.99051 0.88204 1.48214 1.46325 1.08106 1.30484 1.18282 0.81314 0.83512 0.81339 1.90770 1.36732 1.85753 1.31844 1.20739 1.05572 0.97834 0.96112 1.23011 0.89200 0.88390 0.99552 1.68107 1.17673 1.13337 1.20744 1.19327 0.95883 0.95782 0.87843 1.21043 1.00192 0.94136 0.98976 1.21233 0.95882 1.00092 0.90632 1.21814 0.97244 0.95011 1.02059 1.18446 0.94004 0.93217 0.85287 1.84722 1.42863 1.57461 1.46096 1.19247 1.03057 0.97013 0.95779 1.22074 0.91783 0.93544 0.95182 1.21835 0.94720 0.80706 1.02289 1.22373 0.95367 0.99587 0.90038 0.92709 1.02486 0.97008 0.96675 0.88935 0.87608 0.88057 0.81570 0.83419 0.81062 0.81854 0.72179 0.81476 0.89259 0.89129 0.97117 0.89835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.18 13.29 21.45 0.28 -54.89 16 2 C 0.00 0.16 5.46 84.65 0.46 0.62 16 3 Si 0.97 43.23 29.54 68.60 2.03 45.26 16 4 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 5 H -0.29 -12.60 7.11 99.48 0.71 -11.89 16 6 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 7 C -0.52 -28.57 8.41 25.60 0.22 -28.35 16 8 H 0.07 3.53 7.13 -2.91 -0.02 3.51 16 9 C 0.21 10.70 4.72 85.56 0.40 11.11 16 10 N -0.54 -21.56 4.62 -898.87 -4.15 -25.72 16 11 C 0.04 1.19 5.62 86.38 0.49 1.67 16 12 C 0.11 2.70 5.44 86.35 0.47 3.17 16 13 N -0.60 -16.96 3.00 -820.65 -2.46 -19.42 16 14 C 0.57 16.82 7.27 86.74 0.63 17.45 16 15 O -0.57 -20.66 16.50 -3.94 -0.07 -20.72 16 16 C -0.20 -4.92 5.06 -19.99 -0.10 -5.02 16 17 C 0.17 4.36 10.85 85.42 0.93 5.29 16 18 N -0.49 -12.24 10.30 -187.73 -1.93 -14.18 16 19 C 0.13 2.82 6.60 40.23 0.27 3.08 16 20 C -0.12 -1.88 9.95 22.33 0.22 -1.66 16 21 C -0.06 -0.54 9.93 22.01 0.22 -0.33 16 22 C -0.14 -1.41 9.95 22.37 0.22 -1.19 16 23 C 0.14 1.91 6.72 22.86 0.15 2.06 16 24 O -0.50 -5.49 12.76 -90.26 -1.15 -6.64 16 25 C -0.15 -2.83 5.75 -21.21 -0.12 -2.95 16 26 C 0.00 0.01 7.00 22.98 0.16 0.17 16 27 C 0.13 3.91 6.62 86.50 0.57 4.48 16 28 C 0.06 2.09 5.47 86.54 0.47 2.56 16 29 H 0.26 14.75 8.31 -92.71 -0.77 13.98 16 30 H -0.04 -2.42 8.12 -2.39 -0.02 -2.44 16 31 H 0.01 0.64 7.97 -2.39 -0.02 0.62 16 32 H 0.01 0.52 8.14 -2.38 -0.02 0.50 16 33 H 0.09 2.75 7.99 -2.39 -0.02 2.73 16 34 H 0.11 2.02 4.65 -2.39 -0.01 2.01 16 35 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 36 H 0.17 4.00 8.06 -2.91 -0.02 3.98 16 37 H 0.15 1.89 8.06 -2.91 -0.02 1.86 16 38 H 0.17 0.37 8.06 -2.91 -0.02 0.35 16 39 H 0.16 0.75 8.06 -2.91 -0.02 0.73 16 40 H 0.42 0.83 9.06 -74.06 -0.67 0.15 16 41 H 0.17 2.68 6.60 -2.91 -0.02 2.66 16 42 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 43 H 0.09 2.83 7.08 -2.39 -0.02 2.81 16 44 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 45 H 0.08 3.39 6.67 -2.39 -0.02 3.37 16 Total: -1.00 -74.41 370.53 -1.43 -75.84 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: 0.37 Total: 8.31 kcal Atomic # 6 Polarization: 6.52 SS G_CDS: 5.66 Total: 12.18 kcal Atomic # 7 Polarization: -105.94 SS G_CDS: -8.27 Total: -114.21 kcal Atomic # 8 Polarization: -26.15 SS G_CDS: -1.22 Total: -27.36 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Total: -74.41 -1.43 -75.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155533982.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.468 kcal (2) G-P(sol) polarization free energy of solvation -74.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds