Wall clock time and date at job start Wed Apr 1 2020 00:18:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86796 * 120.00297 * 2 1 4 4 H 1.48491 * 109.47473 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47099 * 300.00549 * 3 2 1 6 6 H 1.48498 * 109.47119 * 59.99624 * 3 2 1 7 7 C 1.38817 * 120.00119 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00292 * 157.93247 * 7 2 1 9 9 N 1.36943 * 119.99408 * 337.93451 * 7 2 1 10 10 C 1.46496 * 120.00274 * 324.92321 * 9 7 2 11 11 C 1.52997 * 109.47499 * 270.00442 * 10 9 7 12 12 N 1.46500 * 109.47135 * 180.02562 * 11 10 9 13 13 C 1.34781 * 119.99786 * 180.02562 * 12 11 10 14 14 O 1.21589 * 120.00090 * 0.02562 * 13 12 11 15 15 C 1.47590 * 119.99878 * 179.97438 * 13 12 11 16 16 C 1.39815 * 120.00228 * 359.72716 * 15 13 12 17 17 C 1.36579 * 120.00000 * 179.76129 * 16 15 13 18 18 C 1.39807 * 119.99878 * 0.51097 * 17 16 15 19 19 C 1.47586 * 119.99763 * 179.71975 * 18 17 16 20 20 C 1.35947 * 126.59774 * 359.73441 * 19 18 17 21 21 N 1.34036 * 107.49359 * 179.84321 * 20 19 18 22 22 C 1.30417 * 108.92540 * 0.42756 * 21 20 19 23 23 O 1.33936 * 109.07113 * 359.73407 * 22 21 20 24 24 C 1.39798 * 120.00393 * 359.74055 * 18 17 16 25 25 C 1.36589 * 120.00199 * 359.97438 * 24 18 17 26 26 C 1.46504 * 119.99489 * 144.93086 * 9 7 2 27 27 C 1.53000 * 117.49921 * 3.23472 * 26 9 7 28 28 C 1.52998 * 117.49703 * 294.57074 * 26 9 7 29 29 H 0.96995 * 119.99672 * 355.90991 * 1 2 3 30 30 H 1.09005 * 109.47045 * 30.00589 * 10 9 7 31 31 H 1.08998 * 109.47092 * 149.99943 * 10 9 7 32 32 H 1.09005 * 109.47091 * 300.00118 * 11 10 9 33 33 H 1.09004 * 109.46959 * 59.99639 * 11 10 9 34 34 H 0.96999 * 120.00006 * 359.97438 * 12 11 10 35 35 H 1.08002 * 119.99562 * 0.02562 * 16 15 13 36 36 H 1.08004 * 119.99851 * 180.25684 * 17 16 15 37 37 H 1.07998 * 126.25479 * 359.97438 * 20 19 18 38 38 H 1.08003 * 125.46000 * 179.71026 * 22 21 20 39 39 H 1.08001 * 120.00266 * 179.97438 * 24 18 17 40 40 H 1.07999 * 119.99959 * 179.97438 * 25 24 18 41 41 H 1.09004 * 115.54877 * 148.90350 * 26 9 7 42 42 H 1.08998 * 117.50153 * 359.97438 * 27 26 9 43 43 H 1.08995 * 117.49708 * 145.02504 * 27 26 9 44 44 H 1.08995 * 117.49988 * 214.98174 * 28 26 9 45 45 H 1.08997 * 117.49880 * 359.97438 * 28 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8915 2.3964 1.2124 7 6 2.0103 -1.2022 -0.0005 8 1 3.0309 -1.2363 -0.3519 9 7 1.4007 -2.3448 0.4445 10 6 0.4457 -2.2813 1.5535 11 6 1.1887 -2.4675 2.8779 12 7 0.2335 -2.4045 3.9868 13 6 0.6645 -2.5434 5.2563 14 8 1.8463 -2.7205 5.4811 15 6 -0.2977 -2.4795 6.3735 16 6 -1.6557 -2.2691 6.1155 17 6 -2.5468 -2.2148 7.1491 18 6 -2.0996 -2.3589 8.4658 19 6 -3.0617 -2.2940 9.5831 20 6 -4.4032 -2.0958 9.4870 21 7 -4.9026 -2.1089 10.7308 22 6 -3.9273 -2.2964 11.5762 23 8 -2.7778 -2.4144 10.8990 24 6 -0.7411 -2.5640 8.7243 25 6 0.1493 -2.6241 7.6903 26 6 1.7039 -3.6309 -0.1884 27 6 2.7655 -3.6431 -1.2902 28 6 1.2873 -3.8149 -1.6490 29 1 -0.4849 0.8379 0.0599 30 1 -0.0520 -1.3115 1.5493 31 1 -0.2968 -3.0711 1.4393 32 1 1.6864 -3.4373 2.8821 33 1 1.9312 -1.6776 2.9921 34 1 -0.7091 -2.2622 3.8075 35 1 -2.0005 -2.1538 5.0985 36 1 -3.5963 -2.0564 6.9494 37 1 -4.9644 -1.9557 8.5750 38 1 -4.0302 -2.3478 12.6501 39 1 -0.3957 -2.6749 9.7415 40 1 1.1989 -2.7822 7.8901 41 1 1.6465 -4.5015 0.4649 42 1 3.2380 -2.6944 -1.5444 43 1 3.4061 -4.5220 -1.3619 44 1 0.9562 -4.8067 -1.9568 45 1 0.7872 -2.9795 -2.1389 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317553337.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:18:20 Heat of formation + Delta-G solvation = 67.887675 kcal Electronic energy + Delta-G solvation = -27807.267819 eV Core-core repulsion = 23793.299305 eV Total energy + Delta-G solvation = -4013.968514 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.68609 -40.21357 -38.45455 -37.13515 -35.20585 -34.87834 -33.40235 -32.88064 -31.57202 -30.78414 -29.27928 -27.58998 -24.97173 -24.15404 -23.70554 -22.16677 -22.10979 -21.58884 -21.27638 -20.32397 -19.79575 -18.61448 -17.77714 -16.98811 -16.55893 -16.19619 -15.97103 -15.54351 -15.09623 -14.96039 -14.85970 -14.59801 -14.40192 -13.95527 -13.91140 -13.85237 -13.32616 -13.25533 -12.70811 -12.63936 -12.45338 -11.97854 -11.82186 -11.62734 -11.40915 -11.09531 -10.99177 -10.78421 -10.76923 -10.36743 -10.21870 -10.17312 -9.92757 -9.75570 -9.69031 -9.43622 -9.33482 -8.70618 -8.55584 -8.40319 -6.69550 -5.90301 -3.50385 0.01861 1.08121 1.38217 2.23308 2.28262 2.94562 3.28753 3.38424 3.40126 3.43445 3.73381 3.79101 4.19430 4.38367 4.46376 4.54478 4.58617 4.76790 4.88103 4.97412 5.02498 5.20057 5.23454 5.27149 5.39536 5.44300 5.64533 5.84929 5.85985 5.93986 5.96534 6.04281 6.05720 6.08394 6.17301 6.24701 6.44980 6.45942 6.46447 6.56922 6.75547 6.92298 7.01329 7.17341 7.23971 7.46114 7.72269 7.79100 8.35824 8.43096 9.03479 9.66129 10.20765 11.06168 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.016414 B = 0.002068 C = 0.001996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1705.475363 B =13535.420159 C =14024.173260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.011 3.989 3 Si 0.896 3.104 4 H -0.275 1.275 5 H -0.289 1.289 6 H -0.287 1.287 7 C -0.258 4.258 8 H 0.069 0.931 9 N -0.547 5.547 10 C 0.135 3.865 11 C 0.098 3.902 12 N -0.711 5.711 13 C 0.547 3.453 14 O -0.541 6.541 15 C -0.114 4.114 16 C -0.081 4.081 17 C -0.100 4.100 18 C -0.002 4.002 19 C -0.002 4.002 20 C -0.019 4.019 21 N -0.487 5.487 22 C 0.173 3.827 23 O -0.197 6.197 24 C -0.107 4.107 25 C -0.059 4.059 26 C 0.118 3.882 27 C -0.195 4.195 28 C -0.220 4.220 29 H 0.255 0.745 30 H 0.106 0.894 31 H 0.032 0.968 32 H 0.053 0.947 33 H 0.068 0.932 34 H 0.397 0.603 35 H 0.139 0.861 36 H 0.136 0.864 37 H 0.189 0.811 38 H 0.252 0.748 39 H 0.133 0.867 40 H 0.142 0.858 41 H 0.088 0.912 42 H 0.098 0.902 43 H 0.075 0.925 44 H 0.070 0.930 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.255 -5.873 18.505 21.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.189 4.189 3 Si 0.725 3.275 4 H -0.199 1.199 5 H -0.216 1.216 6 H -0.213 1.213 7 C -0.387 4.387 8 H 0.087 0.913 9 N -0.263 5.263 10 C 0.008 3.992 11 C -0.027 4.027 12 N -0.362 5.362 13 C 0.333 3.667 14 O -0.419 6.419 15 C -0.117 4.117 16 C -0.100 4.100 17 C -0.118 4.118 18 C -0.003 4.003 19 C -0.055 4.055 20 C -0.159 4.159 21 N -0.214 5.214 22 C -0.052 4.052 23 O -0.084 6.084 24 C -0.125 4.125 25 C -0.078 4.078 26 C 0.009 3.991 27 C -0.233 4.233 28 C -0.261 4.261 29 H 0.065 0.935 30 H 0.124 0.876 31 H 0.051 0.949 32 H 0.071 0.929 33 H 0.087 0.913 34 H 0.232 0.768 35 H 0.156 0.844 36 H 0.154 0.846 37 H 0.206 0.794 38 H 0.268 0.732 39 H 0.151 0.849 40 H 0.160 0.840 41 H 0.106 0.894 42 H 0.116 0.884 43 H 0.093 0.907 44 H 0.088 0.912 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -8.091 -5.770 18.769 21.238 hybrid contribution 0.537 0.882 -0.201 1.052 sum -7.554 -4.888 18.568 20.634 Atomic orbital electron populations 1.70038 1.05490 1.26041 1.51027 1.25127 0.95047 0.98833 0.99942 0.86331 0.79960 0.83797 0.77384 1.19930 1.21579 1.21304 1.19148 0.94587 0.85357 1.39602 0.91335 1.43224 1.49189 1.01724 1.32211 1.21109 0.91026 1.03656 0.83385 1.22393 0.92698 1.01260 0.86346 1.46040 1.12271 1.71922 1.05974 1.18175 0.87886 0.77607 0.82998 1.90777 1.17059 1.49517 1.84596 1.20335 0.93834 1.03043 0.94491 1.21063 0.91967 0.97124 0.99824 1.20718 1.00481 1.00346 0.90258 1.17786 0.91338 1.01867 0.89335 1.21488 0.95038 1.07390 0.81558 1.23406 0.91260 1.04718 0.96518 1.70358 1.32753 1.17654 1.00663 1.28188 0.76924 0.99900 1.00184 1.84481 1.37349 1.68812 1.17716 1.20974 0.91666 0.99862 0.99977 1.21000 1.00887 0.95187 0.90696 1.21245 1.00671 0.89929 0.87215 1.23046 0.91929 1.01988 1.06358 1.23361 0.97430 1.00709 1.04573 0.93543 0.87615 0.94948 0.92888 0.91328 0.76807 0.84372 0.84616 0.79433 0.73223 0.84878 0.83975 0.89438 0.88394 0.90657 0.91157 0.88958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.69 11.33 55.49 0.63 -23.06 16 2 C 0.01 0.28 4.96 -17.43 -0.09 0.19 16 3 Si 0.90 20.90 29.61 -169.99 -5.03 15.86 16 4 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 7 C -0.26 -6.64 8.63 -15.05 -0.13 -6.77 16 8 H 0.07 1.79 6.55 -52.49 -0.34 1.45 16 9 N -0.55 -12.77 2.78 -165.66 -0.46 -13.23 16 10 C 0.14 2.85 5.45 -4.05 -0.02 2.83 16 11 C 0.10 1.89 6.00 -4.04 -0.02 1.87 16 12 N -0.71 -11.24 5.50 -61.33 -0.34 -11.58 16 13 C 0.55 8.89 7.76 -12.44 -0.10 8.79 16 14 O -0.54 -10.76 16.33 5.29 0.09 -10.68 16 15 C -0.11 -1.44 5.88 -104.90 -0.62 -2.05 16 16 C -0.08 -0.81 9.48 -39.59 -0.38 -1.18 16 17 C -0.10 -0.87 9.51 -39.59 -0.38 -1.24 16 18 C 0.00 -0.02 5.88 -104.91 -0.62 -0.64 16 19 C 0.00 -0.02 7.06 -36.59 -0.26 -0.28 16 20 C -0.02 -0.17 11.29 -17.41 -0.20 -0.37 16 21 N -0.49 -4.60 11.27 -14.66 -0.17 -4.76 16 22 C 0.17 1.19 13.21 52.16 0.69 1.88 16 23 O -0.20 -1.73 10.57 4.27 0.05 -1.69 16 24 C -0.11 -1.06 9.67 -39.59 -0.38 -1.44 16 25 C -0.06 -0.68 9.53 -39.59 -0.38 -1.06 16 26 C 0.12 2.44 6.56 -67.93 -0.45 1.99 16 27 C -0.19 -3.75 9.80 -26.69 -0.26 -4.02 16 28 C -0.22 -4.33 10.36 -26.69 -0.28 -4.61 16 29 H 0.25 6.60 8.32 -40.82 -0.34 6.26 16 30 H 0.11 2.50 5.36 -51.93 -0.28 2.22 16 31 H 0.03 0.63 8.07 -51.93 -0.42 0.21 16 32 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16 34 H 0.40 5.16 6.48 -40.82 -0.26 4.89 16 35 H 0.14 1.12 6.38 -52.49 -0.34 0.79 16 36 H 0.14 0.81 7.02 -52.48 -0.37 0.44 16 37 H 0.19 1.20 7.29 -52.49 -0.38 0.81 16 38 H 0.25 0.43 8.06 -52.48 -0.42 0.00 16 39 H 0.13 1.11 7.93 -52.49 -0.42 0.69 16 40 H 0.14 1.66 7.64 -52.49 -0.40 1.25 16 41 H 0.09 1.63 8.14 -51.93 -0.42 1.21 16 42 H 0.10 2.06 6.37 -51.93 -0.33 1.72 16 43 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 44 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 45 H 0.09 2.07 8.14 -51.93 -0.42 1.65 16 LS Contribution 384.07 15.07 5.79 5.79 Total: -1.00 -32.28 384.07 -8.94 -41.21 By element: Atomic # 1 Polarization: 13.86 SS G_CDS: -5.63 Total: 8.22 kcal Atomic # 6 Polarization: -2.24 SS G_CDS: -3.85 Total: -6.10 kcal Atomic # 7 Polarization: -52.29 SS G_CDS: -0.33 Total: -52.63 kcal Atomic # 8 Polarization: -12.50 SS G_CDS: 0.13 Total: -12.37 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.03 Total: 15.86 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -32.28 -8.94 -41.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317553337.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.101 kcal (2) G-P(sol) polarization free energy of solvation -32.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.214 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds