Wall clock time and date at job start Wed Apr 1 2020 00:18:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86796 * 120.00297 * 2 1 4 4 H 1.48491 * 109.47473 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47099 * 300.00549 * 3 2 1 6 6 H 1.48498 * 109.47119 * 59.99624 * 3 2 1 7 7 C 1.38817 * 120.00119 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00292 * 157.93247 * 7 2 1 9 9 N 1.36943 * 119.99408 * 337.93451 * 7 2 1 10 10 C 1.46496 * 120.00274 * 324.92321 * 9 7 2 11 11 C 1.52997 * 109.47499 * 270.00442 * 10 9 7 12 12 N 1.46500 * 109.47135 * 180.02562 * 11 10 9 13 13 C 1.34781 * 119.99786 * 180.02562 * 12 11 10 14 14 O 1.21589 * 120.00090 * 0.02562 * 13 12 11 15 15 C 1.47590 * 119.99878 * 179.97438 * 13 12 11 16 16 C 1.39815 * 120.00228 * 359.72716 * 15 13 12 17 17 C 1.36579 * 120.00000 * 179.76129 * 16 15 13 18 18 C 1.39807 * 119.99878 * 0.51097 * 17 16 15 19 19 C 1.47586 * 119.99763 * 179.71975 * 18 17 16 20 20 C 1.35947 * 126.59774 * 359.73441 * 19 18 17 21 21 N 1.34036 * 107.49359 * 179.84321 * 20 19 18 22 22 C 1.30417 * 108.92540 * 0.42756 * 21 20 19 23 23 O 1.33936 * 109.07113 * 359.73407 * 22 21 20 24 24 C 1.39798 * 120.00393 * 359.74055 * 18 17 16 25 25 C 1.36589 * 120.00199 * 359.97438 * 24 18 17 26 26 C 1.46504 * 119.99489 * 144.93086 * 9 7 2 27 27 C 1.53000 * 117.49921 * 3.23472 * 26 9 7 28 28 C 1.52998 * 117.49703 * 294.57074 * 26 9 7 29 29 H 0.96995 * 119.99672 * 355.90991 * 1 2 3 30 30 H 1.09005 * 109.47045 * 30.00589 * 10 9 7 31 31 H 1.08998 * 109.47092 * 149.99943 * 10 9 7 32 32 H 1.09005 * 109.47091 * 300.00118 * 11 10 9 33 33 H 1.09004 * 109.46959 * 59.99639 * 11 10 9 34 34 H 0.96999 * 120.00006 * 359.97438 * 12 11 10 35 35 H 1.08002 * 119.99562 * 0.02562 * 16 15 13 36 36 H 1.08004 * 119.99851 * 180.25684 * 17 16 15 37 37 H 1.07998 * 126.25479 * 359.97438 * 20 19 18 38 38 H 1.08003 * 125.46000 * 179.71026 * 22 21 20 39 39 H 1.08001 * 120.00266 * 179.97438 * 24 18 17 40 40 H 1.07999 * 119.99959 * 179.97438 * 25 24 18 41 41 H 1.09004 * 115.54877 * 148.90350 * 26 9 7 42 42 H 1.08998 * 117.50153 * 359.97438 * 27 26 9 43 43 H 1.08995 * 117.49708 * 145.02504 * 27 26 9 44 44 H 1.08995 * 117.49988 * 214.98174 * 28 26 9 45 45 H 1.08997 * 117.49880 * 359.97438 * 28 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8915 2.3964 1.2124 7 6 2.0103 -1.2022 -0.0005 8 1 3.0309 -1.2363 -0.3519 9 7 1.4007 -2.3448 0.4445 10 6 0.4457 -2.2813 1.5535 11 6 1.1887 -2.4675 2.8779 12 7 0.2335 -2.4045 3.9868 13 6 0.6645 -2.5434 5.2563 14 8 1.8463 -2.7205 5.4811 15 6 -0.2977 -2.4795 6.3735 16 6 -1.6557 -2.2691 6.1155 17 6 -2.5468 -2.2148 7.1491 18 6 -2.0996 -2.3589 8.4658 19 6 -3.0617 -2.2940 9.5831 20 6 -4.4032 -2.0958 9.4870 21 7 -4.9026 -2.1089 10.7308 22 6 -3.9273 -2.2964 11.5762 23 8 -2.7778 -2.4144 10.8990 24 6 -0.7411 -2.5640 8.7243 25 6 0.1493 -2.6241 7.6903 26 6 1.7039 -3.6309 -0.1884 27 6 2.7655 -3.6431 -1.2902 28 6 1.2873 -3.8149 -1.6490 29 1 -0.4849 0.8379 0.0599 30 1 -0.0520 -1.3115 1.5493 31 1 -0.2968 -3.0711 1.4393 32 1 1.6864 -3.4373 2.8821 33 1 1.9312 -1.6776 2.9921 34 1 -0.7091 -2.2622 3.8075 35 1 -2.0005 -2.1538 5.0985 36 1 -3.5963 -2.0564 6.9494 37 1 -4.9644 -1.9557 8.5750 38 1 -4.0302 -2.3478 12.6501 39 1 -0.3957 -2.6749 9.7415 40 1 1.1989 -2.7822 7.8901 41 1 1.6465 -4.5015 0.4649 42 1 3.2380 -2.6944 -1.5444 43 1 3.4061 -4.5220 -1.3619 44 1 0.9562 -4.8067 -1.9568 45 1 0.7872 -2.9795 -2.1389 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317553337.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:18:19 Heat of formation + Delta-G solvation = 46.747453 kcal Electronic energy + Delta-G solvation = -27808.184527 eV Core-core repulsion = 23793.299305 eV Total energy + Delta-G solvation = -4014.885223 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -44.29212 -41.29279 -39.54110 -38.79212 -36.38092 -35.82867 -35.05387 -33.80015 -32.73559 -32.17915 -30.21745 -29.04116 -26.48300 -25.35053 -24.42052 -23.50068 -22.92399 -22.83779 -22.51622 -21.60109 -21.38586 -19.42300 -18.78504 -18.06370 -17.61076 -17.39038 -17.21082 -17.04138 -16.45155 -16.38872 -15.82387 -15.80889 -15.65779 -15.12059 -14.78109 -14.62466 -14.56331 -14.46334 -14.23491 -13.80949 -13.75722 -13.31602 -13.26453 -12.94440 -12.63386 -12.50268 -12.45975 -12.17404 -12.11505 -11.91726 -11.67091 -11.63788 -11.38810 -11.14806 -11.00782 -10.90175 -10.50587 -10.20431 -10.10362 -9.16758 -8.57914 -7.84728 -5.48163 -0.76732 0.31787 0.66137 1.41235 1.46977 1.55068 1.61613 1.67040 1.93260 2.10425 2.48911 2.80272 3.12948 3.33938 3.40054 3.47282 3.54838 3.72069 3.78406 3.85757 4.02062 4.20191 4.28935 4.30327 4.36720 4.39453 4.51260 4.54952 4.61179 4.71373 4.76873 4.80993 4.93440 4.94886 5.04110 5.16071 5.21677 5.27291 5.29757 5.30864 5.34083 5.43393 5.55057 5.66138 5.68184 5.76131 6.41757 6.53936 6.65090 7.10610 7.17478 7.80228 8.29249 9.07253 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.016414 B = 0.002068 C = 0.001996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1705.475363 B =13535.420159 C =14024.173260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C -0.030 4.030 3 Si 0.946 3.054 4 H -0.274 1.274 5 H -0.290 1.290 6 H -0.288 1.288 7 C -0.261 4.261 8 H 0.058 0.942 9 N -0.564 5.564 10 C 0.143 3.857 11 C 0.120 3.880 12 N -0.704 5.704 13 C 0.548 3.452 14 O -0.586 6.586 15 C -0.138 4.138 16 C -0.073 4.073 17 C -0.096 4.096 18 C 0.006 3.994 19 C -0.027 4.027 20 C -0.015 4.015 21 N -0.523 5.523 22 C 0.193 3.807 23 O -0.208 6.208 24 C -0.110 4.110 25 C -0.065 4.065 26 C 0.098 3.902 27 C -0.186 4.186 28 C -0.211 4.211 29 H 0.253 0.747 30 H 0.083 0.917 31 H 0.049 0.951 32 H 0.050 0.950 33 H 0.034 0.966 34 H 0.412 0.588 35 H 0.156 0.844 36 H 0.169 0.831 37 H 0.208 0.792 38 H 0.296 0.704 39 H 0.146 0.854 40 H 0.132 0.868 41 H 0.112 0.888 42 H 0.074 0.926 43 H 0.109 0.891 44 H 0.103 0.897 45 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.938 -6.741 19.909 23.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.228 4.228 3 Si 0.775 3.225 4 H -0.199 1.199 5 H -0.217 1.217 6 H -0.215 1.215 7 C -0.391 4.391 8 H 0.076 0.924 9 N -0.282 5.282 10 C 0.016 3.984 11 C -0.007 4.007 12 N -0.355 5.355 13 C 0.336 3.664 14 O -0.468 6.468 15 C -0.142 4.142 16 C -0.092 4.092 17 C -0.113 4.113 18 C 0.005 3.995 19 C -0.080 4.080 20 C -0.154 4.154 21 N -0.251 5.251 22 C -0.031 4.031 23 O -0.094 6.094 24 C -0.128 4.128 25 C -0.084 4.084 26 C -0.010 4.010 27 C -0.224 4.224 28 C -0.252 4.252 29 H 0.063 0.937 30 H 0.101 0.899 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.052 0.948 34 H 0.250 0.750 35 H 0.174 0.826 36 H 0.186 0.814 37 H 0.225 0.775 38 H 0.311 0.689 39 H 0.164 0.836 40 H 0.150 0.850 41 H 0.130 0.870 42 H 0.093 0.907 43 H 0.128 0.872 44 H 0.121 0.879 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -9.802 -6.647 20.165 23.386 hybrid contribution 0.967 1.099 -0.495 1.545 sum -8.836 -5.549 19.669 22.265 Atomic orbital electron populations 1.70116 1.06194 1.26306 1.52303 1.25645 0.95709 1.00908 1.00579 0.85554 0.78976 0.81071 0.76934 1.19881 1.21717 1.21479 1.19233 0.94336 0.86644 1.38919 0.92392 1.43412 1.49415 1.02139 1.33201 1.20981 0.90969 1.02895 0.83561 1.21874 0.92322 0.99676 0.86782 1.45839 1.12515 1.71908 1.05282 1.18721 0.87944 0.76136 0.83577 1.90743 1.19190 1.51645 1.85228 1.20076 0.94276 1.06507 0.93299 1.21241 0.90764 0.95966 1.01213 1.21035 1.01809 0.99119 0.89367 1.17975 0.91189 1.00217 0.90108 1.21446 0.95162 1.09564 0.81792 1.23808 0.91186 1.03132 0.97262 1.70411 1.33841 1.19567 1.01281 1.29281 0.75790 0.96476 1.01593 1.84491 1.38219 1.69040 1.17688 1.21063 0.91804 0.99900 1.00064 1.20974 1.00851 0.95689 0.90915 1.21555 1.01923 0.89504 0.88015 1.23059 0.92030 1.02293 1.05018 1.23268 0.97517 1.01116 1.03267 0.93738 0.89893 0.93286 0.93205 0.94773 0.75028 0.82618 0.81396 0.77484 0.68907 0.83626 0.84988 0.87018 0.90732 0.87241 0.87851 0.92347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.35 11.33 21.65 0.25 -49.11 16 2 C -0.03 -1.62 4.96 84.86 0.42 -1.20 16 3 Si 0.95 43.79 29.61 68.60 2.03 45.82 16 4 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 5 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 6 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 7 C -0.26 -13.73 8.63 84.03 0.73 -13.00 16 8 H 0.06 3.11 6.55 -2.91 -0.02 3.10 16 9 N -0.56 -26.56 2.78 -678.03 -1.88 -28.44 16 10 C 0.14 6.06 5.45 86.38 0.47 6.53 16 11 C 0.12 4.72 6.00 86.38 0.52 5.24 16 12 N -0.70 -22.42 5.50 -466.20 -2.57 -24.99 16 13 C 0.55 18.20 7.76 86.71 0.67 18.88 16 14 O -0.59 -24.36 16.33 -4.00 -0.07 -24.43 16 15 C -0.14 -3.48 5.88 -20.05 -0.12 -3.60 16 16 C -0.07 -1.34 9.48 22.26 0.21 -1.13 16 17 C -0.10 -1.42 9.51 22.26 0.21 -1.20 16 18 C 0.01 0.11 5.88 -20.05 -0.12 -0.01 16 19 C -0.03 -0.45 7.06 24.21 0.17 -0.28 16 20 C -0.01 -0.22 11.29 83.82 0.95 0.72 16 21 N -0.52 -8.55 11.27 -315.04 -3.55 -12.10 16 22 C 0.19 2.09 13.21 130.45 1.72 3.81 16 23 O -0.21 -3.17 10.57 -7.62 -0.08 -3.25 16 24 C -0.11 -2.10 9.67 22.26 0.22 -1.88 16 25 C -0.07 -1.53 9.53 22.27 0.21 -1.32 16 26 C 0.10 3.93 6.56 44.99 0.30 4.23 16 27 C -0.19 -6.92 9.80 30.62 0.30 -6.62 16 28 C -0.21 -8.04 10.36 30.62 0.32 -7.72 16 29 H 0.25 13.32 8.32 -92.71 -0.77 12.55 16 30 H 0.08 3.99 5.36 -2.38 -0.01 3.98 16 31 H 0.05 1.89 8.07 -2.39 -0.02 1.87 16 32 H 0.05 1.99 8.14 -2.38 -0.02 1.97 16 33 H 0.03 1.57 8.14 -2.38 -0.02 1.55 16 34 H 0.41 10.45 6.48 -92.71 -0.60 9.85 16 35 H 0.16 2.19 6.38 -2.91 -0.02 2.17 16 36 H 0.17 1.36 7.02 -2.91 -0.02 1.34 16 37 H 0.21 1.99 7.29 -2.91 -0.02 1.97 16 38 H 0.30 -0.18 8.06 -2.91 -0.02 -0.20 16 39 H 0.15 2.31 7.93 -2.91 -0.02 2.28 16 40 H 0.13 3.27 7.64 -2.91 -0.02 3.25 16 41 H 0.11 3.92 8.14 -2.38 -0.02 3.90 16 42 H 0.07 3.14 6.37 -2.39 -0.02 3.12 16 43 H 0.11 3.31 8.14 -2.39 -0.02 3.30 16 44 H 0.10 3.23 8.14 -2.39 -0.02 3.21 16 45 H 0.06 2.63 8.14 -2.39 -0.02 2.61 16 Total: -1.00 -72.08 384.07 1.74 -70.34 By element: Atomic # 1 Polarization: 24.28 SS G_CDS: 0.44 Total: 24.72 kcal Atomic # 6 Polarization: -5.74 SS G_CDS: 7.18 Total: 1.44 kcal Atomic # 7 Polarization: -106.89 SS G_CDS: -7.76 Total: -114.64 kcal Atomic # 8 Polarization: -27.53 SS G_CDS: -0.15 Total: -27.68 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Total: -72.08 1.74 -70.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317553337.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.086 kcal (2) G-P(sol) polarization free energy of solvation -72.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.338 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds