Wall clock time and date at job start Tue Mar 31 2020 23:53:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31347 * 1 3 3 Si 1.86794 * 120.00497 * 2 1 4 4 H 1.48503 * 109.46896 * 84.77336 * 3 2 1 5 5 H 1.48501 * 109.47322 * 204.77213 * 3 2 1 6 6 H 1.48504 * 109.47219 * 324.77703 * 3 2 1 7 7 C 1.39012 * 119.99336 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00303 * 19.25883 * 7 2 1 9 9 N 1.36891 * 119.99751 * 199.26512 * 7 2 1 10 10 C 1.38207 * 125.62053 * 223.97363 * 9 7 2 11 11 C 1.46895 * 125.43836 * 0.02562 * 10 9 7 12 12 O 1.21667 * 120.00084 * 185.29923 * 11 10 9 13 13 N 1.34772 * 119.99382 * 5.30181 * 11 10 9 14 14 C 1.46501 * 119.99790 * 185.15808 * 13 11 10 15 15 H 1.08999 * 110.67507 * 32.07606 * 14 13 11 16 16 C 1.54896 * 110.75611 * 268.84456 * 14 13 11 17 17 C 1.54465 * 104.09980 * 203.89443 * 16 14 13 18 18 C 1.53878 * 106.68800 * 23.33843 * 17 16 14 19 19 H 1.08999 * 110.03291 * 240.87432 * 18 17 16 20 20 C 1.50699 * 110.07020 * 119.46640 * 18 17 16 21 21 N 1.34774 * 120.00357 * 62.81279 * 20 18 17 22 22 O 1.21286 * 119.99696 * 242.80531 * 20 18 17 23 23 C 1.54264 * 106.59632 * 0.16147 * 18 17 16 24 24 C 1.36130 * 109.12884 * 180.02562 * 10 9 7 25 25 C 1.41692 * 107.74654 * 359.97438 * 24 10 9 26 26 C 1.40022 * 133.35443 * 180.02562 * 25 24 10 27 27 C 1.36574 * 119.83525 * 179.97438 * 26 25 24 28 28 C 1.38853 * 120.59968 * 0.02562 * 27 26 25 29 29 C 1.37847 * 120.63504 * 359.97438 * 28 27 26 30 30 C 1.37841 * 125.61993 * 43.66692 * 9 7 2 31 31 H 0.97005 * 119.99304 * 354.98668 * 1 2 3 32 32 H 0.96998 * 120.01036 * 5.15781 * 13 11 10 33 33 H 1.08999 * 110.48325 * 322.41727 * 16 14 13 34 34 H 1.08998 * 110.48735 * 85.06083 * 16 14 13 35 35 H 1.09007 * 109.85589 * 264.10085 * 17 16 14 36 36 H 1.08999 * 110.16460 * 142.74581 * 17 16 14 37 37 H 0.97006 * 119.99784 * 359.97438 * 21 20 18 38 38 H 0.96995 * 120.00144 * 179.97438 * 21 20 18 39 39 H 1.09003 * 110.48930 * 217.71319 * 23 18 17 40 40 H 1.08994 * 110.60257 * 95.12126 * 23 18 17 41 41 H 1.08001 * 126.12426 * 179.97438 * 24 10 9 42 42 H 1.08005 * 120.08519 * 359.92700 * 26 25 24 43 43 H 1.08000 * 119.70335 * 179.97438 * 27 26 25 44 44 H 1.07999 * 119.68634 * 179.97438 * 28 27 26 45 45 H 1.07993 * 120.09623 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3135 0.0000 0.0000 3 14 2.2476 1.6176 0.0000 4 1 2.3846 2.1100 1.3943 5 1 3.5960 1.4106 -0.5866 6 1 1.5047 2.6183 -0.8075 7 6 2.0084 -1.2040 -0.0005 8 1 1.5137 -2.1129 -0.3094 9 7 3.3198 -1.2374 0.3906 10 6 4.3334 -1.9252 -0.2494 11 6 4.1765 -2.7395 -1.4620 12 8 5.1173 -3.3819 -1.8893 13 7 2.9905 -2.7748 -2.1011 14 6 2.8002 -3.6726 -3.2430 15 1 3.3946 -4.5784 -3.1236 16 6 3.1533 -2.9555 -4.5698 17 6 2.3557 -3.7318 -5.6409 18 6 1.1815 -4.4093 -4.9127 19 1 1.2491 -5.4917 -5.0217 20 6 -0.1279 -3.9153 -5.4717 21 7 -0.4405 -4.1479 -6.7619 22 8 -0.9005 -3.3085 -4.7605 23 6 1.3017 -4.0193 -3.4250 24 6 5.5004 -1.7278 0.4231 25 6 5.2244 -0.8859 1.5289 26 6 6.0171 -0.3529 2.5527 27 6 5.4514 0.4485 3.5029 28 6 4.0944 0.7406 3.4645 29 6 3.2935 0.2277 2.4666 30 6 3.8482 -0.5858 1.4843 31 1 -0.4849 0.8369 0.0734 32 1 2.2628 -2.2058 -1.8051 33 1 2.8326 -1.9143 -4.5377 34 1 4.2236 -3.0202 -4.7654 35 1 2.9931 -4.4856 -6.1032 36 1 1.9787 -3.0457 -6.3994 37 1 0.1776 -4.6330 -7.3309 38 1 -1.2834 -3.8302 -7.1216 39 1 1.0241 -4.8584 -2.7870 40 1 0.6799 -3.1517 -3.2045 41 1 6.4639 -2.1392 0.1608 42 1 7.0733 -0.5756 2.5913 43 1 6.0647 0.8581 4.2918 44 1 3.6623 1.3756 4.2236 45 1 2.2393 0.4609 2.4449 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001412168467.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:53:34 Heat of formation + Delta-G solvation = -20.373587 kcal Electronic energy + Delta-G solvation = -29823.311792 eV Core-core repulsion = 25805.515982 eV Total energy + Delta-G solvation = -4017.795809 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.82807 -40.11822 -38.71160 -36.91220 -36.15078 -33.99371 -33.69178 -32.97166 -31.38433 -29.41355 -28.92552 -28.61997 -27.38858 -24.95480 -23.36097 -22.33088 -21.17561 -20.76824 -20.10592 -19.71756 -19.14410 -18.41049 -17.59197 -16.82043 -16.69852 -15.87368 -15.82582 -15.56388 -15.10657 -14.61599 -14.38631 -14.25187 -13.99621 -13.64864 -13.54959 -13.30843 -13.25878 -13.07559 -12.75631 -12.50289 -12.08009 -12.00225 -11.67802 -11.47503 -11.41348 -11.19327 -11.01283 -10.97889 -10.82234 -10.60193 -10.50736 -10.27727 -9.91697 -9.89248 -9.80948 -9.52001 -9.43535 -8.73430 -8.49363 -7.39095 -7.01124 -6.93158 -4.71995 1.59072 2.46625 2.57797 2.83593 2.99225 3.10946 3.18395 3.35770 3.77793 3.83775 4.05719 4.14467 4.45852 4.52630 4.62365 4.75054 4.79862 5.13079 5.37106 5.41059 5.44130 5.48827 5.57672 5.63035 5.69553 5.73411 5.78194 5.90339 6.04732 6.17873 6.21668 6.23091 6.32128 6.38257 6.45730 6.60408 6.65085 6.75376 6.82758 7.08086 7.13411 7.18319 7.23238 7.33247 7.53214 7.63347 7.70477 8.05988 8.17742 8.23940 8.57343 8.89992 8.99017 10.02794 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.015374 B = 0.003625 C = 0.003105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1820.779228 B = 7721.678157 C = 9015.186195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.816 5.816 2 C 0.088 3.912 3 Si 0.871 3.129 4 H -0.245 1.245 5 H -0.253 1.253 6 H -0.281 1.281 7 C -0.378 4.378 8 H 0.125 0.875 9 N -0.273 5.273 10 C -0.014 4.014 11 C 0.596 3.404 12 O -0.557 6.557 13 N -0.719 5.719 14 C 0.142 3.858 15 H 0.093 0.907 16 C -0.136 4.136 17 C -0.111 4.111 18 C -0.111 4.111 19 H 0.102 0.898 20 C 0.520 3.480 21 N -0.860 5.860 22 O -0.531 6.531 23 C -0.120 4.120 24 C -0.159 4.159 25 C -0.126 4.126 26 C -0.076 4.076 27 C -0.160 4.160 28 C -0.130 4.130 29 C -0.102 4.102 30 C 0.063 3.937 31 H 0.289 0.711 32 H 0.421 0.579 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.068 0.932 37 H 0.400 0.600 38 H 0.399 0.601 39 H 0.076 0.924 40 H 0.097 0.903 41 H 0.138 0.862 42 H 0.111 0.889 43 H 0.109 0.891 44 H 0.112 0.888 45 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.998 -5.042 -9.216 10.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C -0.128 4.128 3 Si 0.694 3.306 4 H -0.169 1.169 5 H -0.177 1.177 6 H -0.207 1.207 7 C -0.504 4.504 8 H 0.142 0.858 9 N 0.062 4.938 10 C -0.129 4.129 11 C 0.385 3.615 12 O -0.437 6.437 13 N -0.378 5.378 14 C 0.036 3.964 15 H 0.111 0.889 16 C -0.175 4.175 17 C -0.150 4.150 18 C -0.133 4.133 19 H 0.120 0.880 20 C 0.305 3.695 21 N -0.424 5.424 22 O -0.406 6.406 23 C -0.158 4.158 24 C -0.187 4.187 25 C -0.131 4.131 26 C -0.095 4.095 27 C -0.179 4.179 28 C -0.150 4.150 29 C -0.122 4.122 30 C -0.051 4.051 31 H 0.100 0.900 32 H 0.267 0.733 33 H 0.090 0.910 34 H 0.094 0.906 35 H 0.094 0.906 36 H 0.087 0.913 37 H 0.228 0.772 38 H 0.230 0.770 39 H 0.095 0.905 40 H 0.115 0.885 41 H 0.156 0.844 42 H 0.129 0.871 43 H 0.127 0.873 44 H 0.130 0.870 45 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 1.607 -5.055 -9.132 10.561 hybrid contribution -0.345 0.942 -0.424 1.089 sum 1.262 -4.113 -9.556 10.480 Atomic orbital electron populations 1.69651 1.06543 1.30161 1.37947 1.25491 0.95300 0.99519 0.92521 0.86908 0.81181 0.81753 0.80728 1.16931 1.17664 1.20677 1.19214 0.83369 0.97434 1.50429 0.85773 1.40282 1.06038 1.32030 1.15411 1.20249 0.88914 1.06346 0.97384 1.17203 0.82515 0.79901 0.81855 1.90711 1.39929 1.45365 1.67656 1.46718 1.16096 1.43233 1.31722 1.21835 0.95490 0.93577 0.85509 0.88880 1.22812 1.00442 1.00021 0.94250 1.22116 0.95342 0.99513 0.98005 1.21875 0.92436 1.01731 0.97291 0.88007 1.20662 0.88395 0.78657 0.81807 1.43878 1.24585 1.61576 1.12312 1.90801 1.51303 1.40074 1.58410 1.22578 0.96293 1.03887 0.93077 1.20451 0.96673 1.04308 0.97236 1.18009 0.93088 1.03404 0.98608 1.20171 0.98192 0.97405 0.93729 1.20354 0.95019 1.02406 1.00158 1.20586 0.93859 1.01965 0.98627 1.20191 0.99747 0.98208 0.94069 1.18421 0.93234 1.02136 0.91317 0.89972 0.73262 0.90972 0.90622 0.90626 0.91332 0.77217 0.77048 0.90528 0.88451 0.84434 0.87119 0.87269 0.86988 0.86407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -20.72 13.95 55.50 0.77 -19.95 16 2 C 0.09 2.18 4.91 -17.47 -0.09 2.10 16 3 Si 0.87 19.93 24.41 -169.99 -4.15 15.78 16 4 H -0.25 -5.35 5.70 56.52 0.32 -5.03 16 5 H -0.25 -6.20 7.11 56.52 0.40 -5.80 16 6 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 7 C -0.38 -9.38 8.06 -15.01 -0.12 -9.50 16 8 H 0.13 3.15 6.69 -52.49 -0.35 2.80 16 9 N -0.27 -6.61 2.39 -56.08 -0.13 -6.74 16 10 C -0.01 -0.33 6.77 -82.24 -0.56 -0.89 16 11 C 0.60 13.06 7.77 -12.76 -0.10 12.96 16 12 O -0.56 -12.67 16.55 5.22 0.09 -12.58 16 13 N -0.72 -14.05 4.99 -53.11 -0.27 -14.31 16 14 C 0.14 2.22 3.21 -65.93 -0.21 2.00 16 15 H 0.09 1.45 7.63 -51.93 -0.40 1.06 16 16 C -0.14 -1.86 6.53 -24.96 -0.16 -2.02 16 17 C -0.11 -1.09 6.41 -25.51 -0.16 -1.26 16 18 C -0.11 -1.20 3.29 -90.65 -0.30 -1.50 16 19 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 20 C 0.52 6.36 7.18 -10.99 -0.08 6.28 16 21 N -0.86 -6.48 8.77 31.22 0.27 -6.21 16 22 O -0.53 -9.35 16.24 5.55 0.09 -9.26 16 23 C -0.12 -1.73 5.78 -25.07 -0.14 -1.87 16 24 C -0.16 -3.52 10.55 -39.02 -0.41 -3.93 16 25 C -0.13 -2.77 6.16 -106.89 -0.66 -3.43 16 26 C -0.08 -1.43 10.06 -39.51 -0.40 -1.83 16 27 C -0.16 -2.82 9.97 -39.95 -0.40 -3.21 16 28 C -0.13 -2.45 10.02 -39.50 -0.40 -2.85 16 29 C -0.10 -2.25 6.88 -39.41 -0.27 -2.52 16 30 C 0.06 1.48 5.14 -83.83 -0.43 1.05 16 31 H 0.29 6.82 8.31 -40.82 -0.34 6.48 16 32 H 0.42 8.83 4.62 -40.82 -0.19 8.64 16 33 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 34 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.07 0.63 7.62 -51.93 -0.40 0.23 16 37 H 0.40 1.70 8.83 -40.82 -0.36 1.34 16 38 H 0.40 2.72 8.93 -40.82 -0.36 2.36 16 39 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.10 1.71 6.76 -51.93 -0.35 1.36 16 41 H 0.14 2.76 8.06 -52.49 -0.42 2.33 16 42 H 0.11 1.75 8.06 -52.48 -0.42 1.33 16 43 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 44 H 0.11 1.78 8.06 -52.49 -0.42 1.36 16 45 H 0.12 2.63 6.01 -52.49 -0.32 2.32 16 LS Contribution 364.25 15.07 5.49 5.49 Total: -1.00 -31.26 364.25 -8.46 -39.73 By element: Atomic # 1 Polarization: 24.21 SS G_CDS: -5.74 Total: 18.47 kcal Atomic # 6 Polarization: -5.53 SS G_CDS: -4.89 Total: -10.41 kcal Atomic # 7 Polarization: -47.86 SS G_CDS: 0.65 Total: -47.21 kcal Atomic # 8 Polarization: -22.02 SS G_CDS: 0.18 Total: -21.84 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -4.15 Total: 15.78 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.26 -8.46 -39.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412168467.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.353 kcal (2) G-P(sol) polarization free energy of solvation -31.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds