Wall clock time and date at job start Tue Mar 31 2020 23:53:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31347 * 1 3 3 Si 1.86794 * 120.00497 * 2 1 4 4 H 1.48503 * 109.46896 * 84.77336 * 3 2 1 5 5 H 1.48501 * 109.47322 * 204.77213 * 3 2 1 6 6 H 1.48504 * 109.47219 * 324.77703 * 3 2 1 7 7 C 1.39012 * 119.99336 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00303 * 19.25883 * 7 2 1 9 9 N 1.36891 * 119.99751 * 199.26512 * 7 2 1 10 10 C 1.38207 * 125.62053 * 223.97363 * 9 7 2 11 11 C 1.46895 * 125.43836 * 0.02562 * 10 9 7 12 12 O 1.21667 * 120.00084 * 185.29923 * 11 10 9 13 13 N 1.34772 * 119.99382 * 5.30181 * 11 10 9 14 14 C 1.46501 * 119.99790 * 185.15808 * 13 11 10 15 15 H 1.08999 * 110.67507 * 32.07606 * 14 13 11 16 16 C 1.54896 * 110.75611 * 268.84456 * 14 13 11 17 17 C 1.54465 * 104.09980 * 203.89443 * 16 14 13 18 18 C 1.53878 * 106.68800 * 23.33843 * 17 16 14 19 19 H 1.08999 * 110.03291 * 240.87432 * 18 17 16 20 20 C 1.50699 * 110.07020 * 119.46640 * 18 17 16 21 21 N 1.34774 * 120.00357 * 62.81279 * 20 18 17 22 22 O 1.21286 * 119.99696 * 242.80531 * 20 18 17 23 23 C 1.54264 * 106.59632 * 0.16147 * 18 17 16 24 24 C 1.36130 * 109.12884 * 180.02562 * 10 9 7 25 25 C 1.41692 * 107.74654 * 359.97438 * 24 10 9 26 26 C 1.40022 * 133.35443 * 180.02562 * 25 24 10 27 27 C 1.36574 * 119.83525 * 179.97438 * 26 25 24 28 28 C 1.38853 * 120.59968 * 0.02562 * 27 26 25 29 29 C 1.37847 * 120.63504 * 359.97438 * 28 27 26 30 30 C 1.37841 * 125.61993 * 43.66692 * 9 7 2 31 31 H 0.97005 * 119.99304 * 354.98668 * 1 2 3 32 32 H 0.96998 * 120.01036 * 5.15781 * 13 11 10 33 33 H 1.08999 * 110.48325 * 322.41727 * 16 14 13 34 34 H 1.08998 * 110.48735 * 85.06083 * 16 14 13 35 35 H 1.09007 * 109.85589 * 264.10085 * 17 16 14 36 36 H 1.08999 * 110.16460 * 142.74581 * 17 16 14 37 37 H 0.97006 * 119.99784 * 359.97438 * 21 20 18 38 38 H 0.96995 * 120.00144 * 179.97438 * 21 20 18 39 39 H 1.09003 * 110.48930 * 217.71319 * 23 18 17 40 40 H 1.08994 * 110.60257 * 95.12126 * 23 18 17 41 41 H 1.08001 * 126.12426 * 179.97438 * 24 10 9 42 42 H 1.08005 * 120.08519 * 359.92700 * 26 25 24 43 43 H 1.08000 * 119.70335 * 179.97438 * 27 26 25 44 44 H 1.07999 * 119.68634 * 179.97438 * 28 27 26 45 45 H 1.07993 * 120.09623 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3135 0.0000 0.0000 3 14 2.2476 1.6176 0.0000 4 1 2.3846 2.1100 1.3943 5 1 3.5960 1.4106 -0.5866 6 1 1.5047 2.6183 -0.8075 7 6 2.0084 -1.2040 -0.0005 8 1 1.5137 -2.1129 -0.3094 9 7 3.3198 -1.2374 0.3906 10 6 4.3334 -1.9252 -0.2494 11 6 4.1765 -2.7395 -1.4620 12 8 5.1173 -3.3819 -1.8893 13 7 2.9905 -2.7748 -2.1011 14 6 2.8002 -3.6726 -3.2430 15 1 3.3946 -4.5784 -3.1236 16 6 3.1533 -2.9555 -4.5698 17 6 2.3557 -3.7318 -5.6409 18 6 1.1815 -4.4093 -4.9127 19 1 1.2491 -5.4917 -5.0217 20 6 -0.1279 -3.9153 -5.4717 21 7 -0.4405 -4.1479 -6.7619 22 8 -0.9005 -3.3085 -4.7605 23 6 1.3017 -4.0193 -3.4250 24 6 5.5004 -1.7278 0.4231 25 6 5.2244 -0.8859 1.5289 26 6 6.0171 -0.3529 2.5527 27 6 5.4514 0.4485 3.5029 28 6 4.0944 0.7406 3.4645 29 6 3.2935 0.2277 2.4666 30 6 3.8482 -0.5858 1.4843 31 1 -0.4849 0.8369 0.0734 32 1 2.2628 -2.2058 -1.8051 33 1 2.8326 -1.9143 -4.5377 34 1 4.2236 -3.0202 -4.7654 35 1 2.9931 -4.4856 -6.1032 36 1 1.9787 -3.0457 -6.3994 37 1 0.1776 -4.6330 -7.3309 38 1 -1.2834 -3.8302 -7.1216 39 1 1.0241 -4.8584 -2.7870 40 1 0.6799 -3.1517 -3.2045 41 1 6.4639 -2.1392 0.1608 42 1 7.0733 -0.5756 2.5913 43 1 6.0647 0.8581 4.2918 44 1 3.6623 1.3756 4.2236 45 1 2.2393 0.4609 2.4449 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001412168467.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:53:33 Heat of formation + Delta-G solvation = -42.789845 kcal Electronic energy + Delta-G solvation = -29824.283833 eV Core-core repulsion = 25805.515982 eV Total energy + Delta-G solvation = -4018.767851 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.50471 -41.21254 -40.21510 -38.17057 -37.75619 -35.58363 -34.94524 -34.30768 -33.11095 -30.96468 -30.23458 -29.93231 -28.69520 -26.77540 -24.88499 -23.35111 -22.83433 -22.19901 -21.52727 -21.04898 -20.47541 -20.14002 -18.58812 -18.22500 -17.74426 -17.60527 -17.04925 -16.84281 -16.65028 -16.33576 -15.97236 -15.72343 -15.19424 -15.16055 -14.98067 -14.84376 -14.72320 -14.55332 -14.30852 -14.03744 -13.67284 -13.40898 -13.16226 -12.82517 -12.75592 -12.55404 -12.47931 -12.30648 -12.26688 -12.03431 -11.86969 -11.68496 -11.54167 -11.33547 -11.15013 -10.89967 -10.65185 -10.45105 -10.03201 -9.06433 -8.87292 -8.63318 -6.62635 -0.04422 0.88531 1.08643 1.15675 1.28956 1.32946 1.63114 1.96320 2.18933 2.27878 2.43819 2.60790 2.78611 3.13709 3.45744 3.51658 3.89134 3.93234 4.02915 4.19951 4.28872 4.29380 4.35199 4.38033 4.42636 4.50189 4.57615 4.66262 4.67354 4.79520 4.84236 5.01402 5.02014 5.11691 5.14583 5.17574 5.24851 5.25602 5.33329 5.56654 5.68354 5.70178 5.80613 5.91430 5.99261 6.03792 6.37061 6.48309 6.52730 6.74779 7.17653 7.21492 7.37865 8.17449 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.015374 B = 0.003625 C = 0.003105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1820.779228 B = 7721.678157 C = 9015.186195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.851 5.851 2 C 0.064 3.936 3 Si 0.914 3.086 4 H -0.226 1.226 5 H -0.280 1.280 6 H -0.276 1.276 7 C -0.381 4.381 8 H 0.103 0.897 9 N -0.294 5.294 10 C -0.042 4.042 11 C 0.592 3.408 12 O -0.572 6.572 13 N -0.718 5.718 14 C 0.133 3.867 15 H 0.098 0.902 16 C -0.136 4.136 17 C -0.098 4.098 18 C -0.102 4.102 19 H 0.142 0.858 20 C 0.517 3.483 21 N -0.833 5.833 22 O -0.596 6.596 23 C -0.119 4.119 24 C -0.157 4.157 25 C -0.145 4.145 26 C -0.073 4.073 27 C -0.152 4.152 28 C -0.111 4.111 29 C -0.142 4.142 30 C 0.042 3.958 31 H 0.295 0.705 32 H 0.413 0.587 33 H 0.048 0.952 34 H 0.076 0.924 35 H 0.114 0.886 36 H 0.079 0.921 37 H 0.420 0.580 38 H 0.406 0.594 39 H 0.077 0.923 40 H 0.058 0.942 41 H 0.156 0.844 42 H 0.146 0.854 43 H 0.157 0.843 44 H 0.146 0.854 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.235 -5.118 -9.281 11.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.480 5.480 2 C -0.149 4.149 3 Si 0.737 3.263 4 H -0.149 1.149 5 H -0.205 1.205 6 H -0.202 1.202 7 C -0.508 4.508 8 H 0.121 0.879 9 N 0.040 4.960 10 C -0.156 4.156 11 C 0.380 3.620 12 O -0.453 6.453 13 N -0.374 5.374 14 C 0.029 3.971 15 H 0.116 0.884 16 C -0.174 4.174 17 C -0.136 4.136 18 C -0.124 4.124 19 H 0.160 0.840 20 C 0.302 3.698 21 N -0.397 5.397 22 O -0.476 6.476 23 C -0.157 4.157 24 C -0.184 4.184 25 C -0.150 4.150 26 C -0.092 4.092 27 C -0.171 4.171 28 C -0.131 4.131 29 C -0.162 4.162 30 C -0.071 4.071 31 H 0.105 0.895 32 H 0.257 0.743 33 H 0.067 0.933 34 H 0.095 0.905 35 H 0.133 0.867 36 H 0.098 0.902 37 H 0.252 0.748 38 H 0.237 0.763 39 H 0.096 0.904 40 H 0.076 0.924 41 H 0.173 0.827 42 H 0.164 0.836 43 H 0.175 0.825 44 H 0.164 0.836 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 3.844 -5.163 -9.261 11.278 hybrid contribution -0.895 0.927 -0.295 1.322 sum 2.949 -4.236 -9.556 10.861 Atomic orbital electron populations 1.69684 1.07338 1.30914 1.40110 1.25871 0.95588 1.01155 0.92286 0.86291 0.78752 0.79819 0.81425 1.14891 1.20483 1.20160 1.19023 0.84093 0.96838 1.50801 0.87947 1.40281 1.05734 1.33528 1.16488 1.20650 0.89571 1.06917 0.98413 1.17208 0.82982 0.79891 0.81889 1.90672 1.40265 1.46196 1.68150 1.46797 1.14983 1.43198 1.32452 1.22153 0.96482 0.93298 0.85195 0.88382 1.22773 1.01110 0.99144 0.94423 1.22114 0.94708 1.00116 0.96666 1.21885 0.92143 1.04072 0.94280 0.84006 1.20920 0.88269 0.77878 0.82706 1.43645 1.25066 1.60109 1.10843 1.90790 1.53284 1.43216 1.60340 1.22486 0.94530 1.02339 0.96362 1.20769 0.96896 1.03793 0.96968 1.18413 0.92947 1.03956 0.99647 1.20645 0.99715 0.96398 0.92438 1.20888 0.94745 1.00931 1.00488 1.21121 0.94411 1.00121 0.97412 1.20321 0.99770 1.00401 0.95724 1.18914 0.94294 1.02332 0.91551 0.89461 0.74276 0.93289 0.90543 0.86723 0.90192 0.74777 0.76291 0.90392 0.92355 0.82686 0.83592 0.82545 0.83581 0.87826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -45.63 13.95 21.67 0.30 -45.33 16 2 C 0.06 3.34 4.91 84.95 0.42 3.76 16 3 Si 0.91 42.50 24.41 68.60 1.67 44.18 16 4 H -0.23 -9.67 5.70 99.48 0.57 -9.10 16 5 H -0.28 -14.10 7.11 99.48 0.71 -13.40 16 6 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 7 C -0.38 -20.19 8.06 84.09 0.68 -19.52 16 8 H 0.10 5.71 6.69 -2.91 -0.02 5.69 16 9 N -0.29 -14.89 2.39 -331.33 -0.79 -15.68 16 10 C -0.04 -2.04 6.77 39.92 0.27 -1.77 16 11 C 0.59 27.12 7.77 86.51 0.67 27.80 16 12 O -0.57 -26.58 16.55 -4.25 -0.07 -26.65 16 13 N -0.72 -30.03 4.99 -440.18 -2.20 -32.22 16 14 C 0.13 4.32 3.21 46.29 0.15 4.46 16 15 H 0.10 3.09 7.63 -2.39 -0.02 3.07 16 16 C -0.14 -3.72 6.53 31.74 0.21 -3.51 16 17 C -0.10 -1.69 6.41 31.39 0.20 -1.49 16 18 C -0.10 -2.05 3.29 -10.82 -0.04 -2.09 16 19 H 0.14 1.77 8.14 -2.39 -0.02 1.75 16 20 C 0.52 12.32 7.18 87.66 0.63 12.95 16 21 N -0.83 -10.74 8.77 -173.53 -1.52 -12.27 16 22 O -0.60 -21.97 16.24 -3.05 -0.05 -22.02 16 23 C -0.12 -3.58 5.78 31.67 0.18 -3.40 16 24 C -0.16 -6.94 10.55 22.63 0.24 -6.70 16 25 C -0.14 -6.24 6.16 -21.34 -0.13 -6.37 16 26 C -0.07 -2.49 10.06 22.31 0.22 -2.27 16 27 C -0.15 -4.60 9.97 22.03 0.22 -4.38 16 28 C -0.11 -3.80 10.02 22.32 0.22 -3.57 16 29 C -0.14 -6.16 6.88 22.38 0.15 -6.00 16 30 C 0.04 2.01 5.14 39.06 0.20 2.21 16 31 H 0.29 14.55 8.31 -92.70 -0.77 13.78 16 32 H 0.41 18.99 4.62 -92.71 -0.43 18.56 16 33 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 35 H 0.11 1.19 8.14 -2.38 -0.02 1.17 16 36 H 0.08 1.25 7.62 -2.39 -0.02 1.23 16 37 H 0.42 2.06 8.83 -92.70 -0.82 1.24 16 38 H 0.41 4.82 8.93 -92.71 -0.83 4.00 16 39 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 40 H 0.06 2.26 6.76 -2.39 -0.02 2.24 16 41 H 0.16 6.11 8.06 -2.91 -0.02 6.09 16 42 H 0.15 3.89 8.06 -2.91 -0.02 3.87 16 43 H 0.16 3.35 8.06 -2.91 -0.02 3.33 16 44 H 0.15 3.97 8.06 -2.91 -0.02 3.95 16 45 H 0.10 4.70 6.01 -2.91 -0.02 4.69 16 Total: -1.00 -74.27 364.25 0.70 -73.56 By element: Atomic # 1 Polarization: 47.47 SS G_CDS: -1.14 Total: 46.32 kcal Atomic # 6 Polarization: -14.39 SS G_CDS: 4.50 Total: -9.89 kcal Atomic # 7 Polarization: -101.29 SS G_CDS: -4.21 Total: -105.50 kcal Atomic # 8 Polarization: -48.55 SS G_CDS: -0.12 Total: -48.67 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 1.67 Total: 44.18 kcal Total: -74.27 0.70 -73.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412168467.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.774 kcal (2) G-P(sol) polarization free energy of solvation -74.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds