Wall clock time and date at job start Tue Mar 31 2020 23:54:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30669 * 1 3 3 Si 1.86811 * 119.99669 * 2 1 4 4 H 1.48501 * 109.46920 * 359.97438 * 3 2 1 5 5 H 1.48501 * 109.46918 * 119.99967 * 3 2 1 6 6 H 1.48503 * 109.46898 * 239.99901 * 3 2 1 7 7 C 1.40044 * 120.00419 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00328 * 180.02562 * 7 2 1 9 9 C 1.46373 * 119.99945 * 359.97438 * 7 2 1 10 10 O 1.21683 * 119.99915 * 354.93891 * 9 7 2 11 11 N 1.34777 * 120.00238 * 174.93890 * 9 7 2 12 12 C 1.47086 * 120.87757 * 4.98076 * 11 9 7 13 13 C 1.53705 * 108.27386 * 128.75501 * 12 11 9 14 14 N 1.46888 * 109.25730 * 54.08090 * 13 12 11 15 15 C 1.46898 * 111.00043 * 172.60445 * 14 13 12 16 16 C 1.50701 * 109.47251 * 308.07306 * 15 14 13 17 17 C 1.36082 * 120.59376 * 106.88567 * 16 15 14 18 18 N 1.32655 * 121.95930 * 179.70060 * 17 16 15 19 19 C 1.31763 * 122.67733 * 0.59334 * 18 17 16 20 20 O 1.35494 * 120.12786 * 179.73170 * 19 18 17 21 21 C 1.41062 * 119.75002 * 359.70987 * 19 18 17 22 22 C 1.40164 * 122.06770 * 179.97438 * 21 19 18 23 23 C 1.36272 * 119.53089 * 180.02562 * 22 21 19 24 24 C 1.39312 * 121.05406 * 0.02562 * 23 22 21 25 25 C 1.36261 * 120.98682 * 359.95194 * 24 23 22 26 26 C 1.40197 * 119.47642 * 0.04996 * 25 24 23 27 27 C 1.46902 * 111.27267 * 296.75350 * 14 13 12 28 28 C 1.47079 * 120.88447 * 185.25498 * 11 9 7 29 29 H 0.96997 * 120.00657 * 0.02562 * 1 2 3 30 30 H 1.09001 * 109.62625 * 248.51967 * 12 11 9 31 31 H 1.08996 * 109.62762 * 9.10337 * 12 11 9 32 32 H 1.09000 * 109.64809 * 294.07593 * 13 12 11 33 33 H 1.09001 * 109.43697 * 173.96052 * 13 12 11 34 34 H 1.09003 * 109.47100 * 68.07272 * 15 14 13 35 35 H 1.08998 * 109.47503 * 188.06774 * 15 14 13 36 36 H 1.08001 * 119.01951 * 359.97438 * 17 16 15 37 37 H 0.96697 * 113.99829 * 269.98390 * 20 19 18 38 38 H 1.07995 * 120.23853 * 0.04152 * 22 21 19 39 39 H 1.08001 * 119.47144 * 179.97438 * 23 22 21 40 40 H 1.07996 * 119.50565 * 179.97438 * 24 23 22 41 41 H 1.08000 * 120.26310 * 180.02562 * 25 24 23 42 42 H 1.08996 * 109.49204 * 303.14775 * 27 14 13 43 43 H 1.08999 * 109.49672 * 183.06545 * 27 14 13 44 44 H 1.08993 * 109.62742 * 350.90140 * 28 11 9 45 45 H 1.09006 * 109.62586 * 111.28397 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6179 0.0000 4 1 1.2755 2.7465 -0.0006 5 1 3.0944 1.6966 1.2125 6 1 3.0944 1.6965 -1.2125 7 6 2.0070 -1.2128 0.0005 8 1 3.0870 -1.2127 0.0010 9 6 1.2752 -2.4804 0.0017 10 8 0.0620 -2.4825 0.0951 11 7 1.9451 -3.6454 -0.1008 12 6 3.4157 -3.6726 -0.1053 13 6 3.8822 -4.6904 0.9479 14 7 3.2368 -5.9844 0.6902 15 6 3.7860 -7.0299 1.5639 16 6 5.2893 -7.0344 1.4581 17 6 6.0566 -6.5564 2.4752 18 7 7.3817 -6.5529 2.4133 19 6 8.0462 -6.9978 1.3660 20 8 9.4007 -6.9649 1.3557 21 6 7.3420 -7.5090 0.2558 22 6 7.9992 -7.9941 -0.8832 23 6 7.2674 -8.4761 -1.9268 24 6 5.8752 -8.4941 -1.8806 25 6 5.2035 -8.0309 -0.7893 26 6 5.9248 -7.5279 0.3026 27 6 1.7779 -5.8905 0.8346 28 6 1.2252 -4.9226 -0.2170 29 1 -0.4851 0.8400 -0.0004 30 1 3.7734 -3.9710 -1.0908 31 1 3.8010 -2.6838 0.1433 32 1 3.6090 -4.3393 1.9430 33 1 4.9644 -4.8051 0.8871 34 1 3.4950 -6.8312 2.5954 35 1 3.3972 -8.0009 1.2574 36 1 5.5725 -6.1726 3.3610 37 1 9.7714 -6.1478 0.9952 38 1 9.0780 -7.9863 -0.9333 39 1 7.7748 -8.8492 -2.8041 40 1 5.3200 -8.8812 -2.7221 41 1 4.1239 -8.0507 -0.7657 42 1 1.5340 -5.5228 1.8313 43 1 1.3340 -6.8757 0.6912 44 1 0.1616 -4.7606 -0.0424 45 1 1.3735 -5.3371 -1.2142 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001412989027.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:54:26 Heat of formation + Delta-G solvation = -0.490373 kcal Electronic energy + Delta-G solvation = -29615.442186 eV Core-core repulsion = 25598.508577 eV Total energy + Delta-G solvation = -4016.933609 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.33969 -38.96012 -38.08065 -37.32090 -36.37866 -33.96986 -32.55995 -32.16053 -31.32666 -30.70381 -29.82161 -27.59626 -26.14241 -24.52019 -23.92381 -23.54764 -23.04339 -21.32626 -20.61296 -19.09976 -18.86277 -18.03412 -17.49723 -16.68532 -16.22963 -15.89192 -15.34075 -15.16281 -15.06252 -14.72323 -14.40018 -14.32367 -14.12801 -14.00171 -13.76321 -13.60360 -13.30808 -12.91758 -12.50837 -12.32452 -12.18348 -12.01433 -11.92890 -11.71802 -11.43904 -11.31042 -11.16689 -10.98647 -10.91176 -10.78981 -10.50522 -10.26302 -10.11038 -9.94051 -9.58637 -9.29874 -8.87780 -8.34192 -8.04587 -7.61619 -7.21804 -6.22342 -4.67522 0.10773 0.68989 1.66173 2.77810 3.13406 3.18627 3.20067 3.31918 3.76239 4.03795 4.11849 4.31808 4.39807 4.52170 4.53351 4.58535 4.69018 4.86235 4.91857 5.00709 5.19711 5.25849 5.30110 5.46752 5.47916 5.52548 5.64387 5.68323 5.75504 5.79743 5.83315 5.84016 5.88797 6.05461 6.18519 6.22310 6.27755 6.32004 6.42944 6.50189 6.63677 6.67520 7.11296 7.19746 7.20738 7.42494 7.58296 7.73445 8.10392 8.33486 8.99424 9.41104 10.54761 10.73304 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.013969 B = 0.002975 C = 0.002764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2003.971873 B = 9410.624150 C =10126.229362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.089 3.911 3 Si 0.906 3.094 4 H -0.280 1.280 5 H -0.268 1.268 6 H -0.267 1.267 7 C -0.545 4.545 8 H 0.071 0.929 9 C 0.560 3.440 10 O -0.579 6.579 11 N -0.644 5.644 12 C 0.131 3.869 13 C 0.041 3.959 14 N -0.529 5.529 15 C 0.097 3.903 16 C -0.115 4.115 17 C 0.100 3.900 18 N -0.503 5.503 19 C 0.344 3.656 20 O -0.478 6.478 21 C -0.120 4.120 22 C -0.089 4.089 23 C -0.118 4.118 24 C -0.103 4.103 25 C -0.089 4.089 26 C 0.003 3.997 27 C 0.045 3.955 28 C 0.126 3.874 29 H 0.269 0.731 30 H 0.048 0.952 31 H 0.093 0.907 32 H 0.037 0.963 33 H 0.071 0.929 34 H 0.046 0.954 35 H 0.087 0.913 36 H 0.155 0.845 37 H 0.402 0.598 38 H 0.133 0.867 39 H 0.125 0.875 40 H 0.127 0.873 41 H 0.142 0.858 42 H 0.037 0.963 43 H 0.074 0.926 44 H 0.086 0.914 45 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.233 -16.671 -1.184 22.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.131 4.131 3 Si 0.730 3.270 4 H -0.205 1.205 5 H -0.192 1.192 6 H -0.192 1.192 7 C -0.582 4.582 8 H 0.089 0.911 9 C 0.366 3.634 10 O -0.461 6.461 11 N -0.383 5.383 12 C 0.006 3.994 13 C -0.087 4.087 14 N -0.254 5.254 15 C -0.031 4.031 16 C -0.117 4.117 17 C -0.044 4.044 18 N -0.221 5.221 19 C 0.151 3.849 20 O -0.285 6.285 21 C -0.124 4.124 22 C -0.108 4.108 23 C -0.136 4.136 24 C -0.122 4.122 25 C -0.107 4.107 26 C -0.002 4.002 27 C -0.084 4.084 28 C 0.002 3.998 29 H 0.080 0.920 30 H 0.067 0.933 31 H 0.111 0.889 32 H 0.055 0.945 33 H 0.089 0.911 34 H 0.064 0.936 35 H 0.105 0.895 36 H 0.172 0.828 37 H 0.261 0.739 38 H 0.150 0.850 39 H 0.143 0.857 40 H 0.145 0.855 41 H 0.160 0.840 42 H 0.055 0.945 43 H 0.093 0.907 44 H 0.105 0.895 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 14.798 -16.873 -0.617 22.451 hybrid contribution 0.167 1.125 -0.005 1.138 sum 14.965 -15.747 -0.622 21.733 Atomic orbital electron populations 1.69996 1.07066 1.27437 1.35182 1.25715 0.94601 1.00265 0.92553 0.86468 0.79892 0.81140 0.79495 1.20510 1.19240 1.19223 1.20934 0.93510 0.89308 1.54417 0.91070 1.18232 0.86882 0.82190 0.76084 1.90586 1.14390 1.86086 1.55082 1.48241 1.04679 1.05818 1.79533 1.21541 0.82676 0.98541 0.96651 1.22670 0.98222 0.89066 0.98775 1.62119 1.04944 1.05884 1.52448 1.20960 0.88969 0.97005 0.96192 1.20530 0.96818 0.99895 0.94446 1.21823 0.87232 0.96802 0.98538 1.66950 1.10470 1.17583 1.27095 1.19272 0.84067 0.93499 0.88022 1.84684 1.14487 1.43136 1.86218 1.18953 0.93510 1.04178 0.95713 1.20860 1.00169 0.97590 0.92220 1.20953 0.94237 0.99708 0.98699 1.21050 0.94375 0.98431 0.98326 1.21113 1.00840 0.96641 0.92064 1.17888 0.91339 0.96530 0.94470 1.22539 0.86705 0.99846 0.99271 1.21186 0.97915 0.84408 0.96329 0.92012 0.93346 0.88894 0.94477 0.91104 0.93576 0.89520 0.82825 0.73928 0.84959 0.85671 0.85506 0.84002 0.94496 0.90730 0.89541 0.93303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.86 11.84 55.55 0.66 -22.20 16 2 C 0.09 2.44 5.50 -17.37 -0.10 2.35 16 3 Si 0.91 19.93 29.56 -169.99 -5.02 14.90 16 4 H -0.28 -6.04 7.11 56.52 0.40 -5.63 16 5 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 6 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 7 C -0.55 -15.15 8.86 -35.63 -0.32 -15.47 16 8 H 0.07 1.80 5.74 -52.48 -0.30 1.50 16 9 C 0.56 15.80 7.63 -12.99 -0.10 15.70 16 10 O -0.58 -18.55 14.49 5.20 0.08 -18.47 16 11 N -0.64 -14.47 3.00 -173.83 -0.52 -14.99 16 12 C 0.13 2.45 6.50 -3.36 -0.02 2.43 16 13 C 0.04 0.64 5.30 -3.46 -0.02 0.62 16 14 N -0.53 -7.23 4.48 -235.47 -1.05 -8.28 16 15 C 0.10 1.07 4.45 -4.98 -0.02 1.05 16 16 C -0.11 -1.33 3.74 -104.43 -0.39 -1.72 16 17 C 0.10 1.21 10.11 -17.97 -0.18 1.03 16 18 N -0.50 -6.61 10.33 -13.25 -0.14 -6.75 16 19 C 0.34 4.06 7.82 -16.51 -0.13 3.93 16 20 O -0.48 -4.55 12.86 -18.17 -0.23 -4.79 16 21 C -0.12 -1.36 5.75 -106.74 -0.61 -1.97 16 22 C -0.09 -0.81 9.59 -39.57 -0.38 -1.19 16 23 C -0.12 -0.98 9.95 -39.89 -0.40 -1.38 16 24 C -0.10 -0.91 9.95 -39.89 -0.40 -1.31 16 25 C -0.09 -0.92 9.30 -39.56 -0.37 -1.29 16 26 C 0.00 0.03 5.75 -106.83 -0.61 -0.58 16 27 C 0.04 0.67 5.62 -3.70 -0.02 0.65 16 28 C 0.13 2.40 6.61 -3.60 -0.02 2.37 16 29 H 0.27 7.29 8.29 -40.82 -0.34 6.95 16 30 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.09 1.83 5.46 -51.93 -0.28 1.54 16 32 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.07 1.03 6.21 -51.93 -0.32 0.71 16 34 H 0.05 0.50 7.92 -51.93 -0.41 0.09 16 35 H 0.09 0.84 7.52 -51.93 -0.39 0.45 16 36 H 0.15 1.63 7.95 -52.49 -0.42 1.21 16 37 H 0.40 1.90 9.06 45.56 0.41 2.32 16 38 H 0.13 0.95 7.68 -52.49 -0.40 0.54 16 39 H 0.13 0.73 8.06 -52.49 -0.42 0.30 16 40 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 41 H 0.14 1.43 6.79 -52.49 -0.36 1.07 16 42 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.07 0.90 8.11 -51.93 -0.42 0.48 16 44 H 0.09 1.84 7.04 -51.93 -0.37 1.47 16 45 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 366.75 15.07 5.53 5.53 Total: -1.00 -36.03 366.75 -9.73 -45.76 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: -4.93 Total: 4.06 kcal Atomic # 6 Polarization: 9.31 SS G_CDS: -4.09 Total: 5.23 kcal Atomic # 7 Polarization: -51.16 SS G_CDS: -1.06 Total: -52.22 kcal Atomic # 8 Polarization: -23.10 SS G_CDS: -0.16 Total: -23.26 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -5.02 Total: 14.90 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -36.03 -9.73 -45.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412989027.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.271 kcal (2) G-P(sol) polarization free energy of solvation -36.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds