Wall clock time and date at job start Tue Mar 31 2020 23:54:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30669 * 1 3 3 Si 1.86811 * 119.99669 * 2 1 4 4 H 1.48501 * 109.46920 * 359.97438 * 3 2 1 5 5 H 1.48501 * 109.46918 * 119.99967 * 3 2 1 6 6 H 1.48503 * 109.46898 * 239.99901 * 3 2 1 7 7 C 1.40044 * 120.00419 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00328 * 180.02562 * 7 2 1 9 9 C 1.46373 * 119.99945 * 359.97438 * 7 2 1 10 10 O 1.21683 * 119.99915 * 354.93891 * 9 7 2 11 11 N 1.34777 * 120.00238 * 174.93890 * 9 7 2 12 12 C 1.47086 * 120.87757 * 4.98076 * 11 9 7 13 13 C 1.53705 * 108.27386 * 128.75501 * 12 11 9 14 14 N 1.46888 * 109.25730 * 54.08090 * 13 12 11 15 15 C 1.46898 * 111.00043 * 172.60445 * 14 13 12 16 16 C 1.50701 * 109.47251 * 308.07306 * 15 14 13 17 17 C 1.36082 * 120.59376 * 106.88567 * 16 15 14 18 18 N 1.32655 * 121.95930 * 179.70060 * 17 16 15 19 19 C 1.31763 * 122.67733 * 0.59334 * 18 17 16 20 20 O 1.35494 * 120.12786 * 179.73170 * 19 18 17 21 21 C 1.41062 * 119.75002 * 359.70987 * 19 18 17 22 22 C 1.40164 * 122.06770 * 179.97438 * 21 19 18 23 23 C 1.36272 * 119.53089 * 180.02562 * 22 21 19 24 24 C 1.39312 * 121.05406 * 0.02562 * 23 22 21 25 25 C 1.36261 * 120.98682 * 359.95194 * 24 23 22 26 26 C 1.40197 * 119.47642 * 0.04996 * 25 24 23 27 27 C 1.46902 * 111.27267 * 296.75350 * 14 13 12 28 28 C 1.47079 * 120.88447 * 185.25498 * 11 9 7 29 29 H 0.96997 * 120.00657 * 0.02562 * 1 2 3 30 30 H 1.09001 * 109.62625 * 248.51967 * 12 11 9 31 31 H 1.08996 * 109.62762 * 9.10337 * 12 11 9 32 32 H 1.09000 * 109.64809 * 294.07593 * 13 12 11 33 33 H 1.09001 * 109.43697 * 173.96052 * 13 12 11 34 34 H 1.09003 * 109.47100 * 68.07272 * 15 14 13 35 35 H 1.08998 * 109.47503 * 188.06774 * 15 14 13 36 36 H 1.08001 * 119.01951 * 359.97438 * 17 16 15 37 37 H 0.96697 * 113.99829 * 269.98390 * 20 19 18 38 38 H 1.07995 * 120.23853 * 0.04152 * 22 21 19 39 39 H 1.08001 * 119.47144 * 179.97438 * 23 22 21 40 40 H 1.07996 * 119.50565 * 179.97438 * 24 23 22 41 41 H 1.08000 * 120.26310 * 180.02562 * 25 24 23 42 42 H 1.08996 * 109.49204 * 303.14775 * 27 14 13 43 43 H 1.08999 * 109.49672 * 183.06545 * 27 14 13 44 44 H 1.08993 * 109.62742 * 350.90140 * 28 11 9 45 45 H 1.09006 * 109.62586 * 111.28397 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6179 0.0000 4 1 1.2755 2.7465 -0.0006 5 1 3.0944 1.6966 1.2125 6 1 3.0944 1.6965 -1.2125 7 6 2.0070 -1.2128 0.0005 8 1 3.0870 -1.2127 0.0010 9 6 1.2752 -2.4804 0.0017 10 8 0.0620 -2.4825 0.0951 11 7 1.9451 -3.6454 -0.1008 12 6 3.4157 -3.6726 -0.1053 13 6 3.8822 -4.6904 0.9479 14 7 3.2368 -5.9844 0.6902 15 6 3.7860 -7.0299 1.5639 16 6 5.2893 -7.0344 1.4581 17 6 6.0566 -6.5564 2.4752 18 7 7.3817 -6.5529 2.4133 19 6 8.0462 -6.9978 1.3660 20 8 9.4007 -6.9649 1.3557 21 6 7.3420 -7.5090 0.2558 22 6 7.9992 -7.9941 -0.8832 23 6 7.2674 -8.4761 -1.9268 24 6 5.8752 -8.4941 -1.8806 25 6 5.2035 -8.0309 -0.7893 26 6 5.9248 -7.5279 0.3026 27 6 1.7779 -5.8905 0.8346 28 6 1.2252 -4.9226 -0.2170 29 1 -0.4851 0.8400 -0.0004 30 1 3.7734 -3.9710 -1.0908 31 1 3.8010 -2.6838 0.1433 32 1 3.6090 -4.3393 1.9430 33 1 4.9644 -4.8051 0.8871 34 1 3.4950 -6.8312 2.5954 35 1 3.3972 -8.0009 1.2574 36 1 5.5725 -6.1726 3.3610 37 1 9.7714 -6.1478 0.9952 38 1 9.0780 -7.9863 -0.9333 39 1 7.7748 -8.8492 -2.8041 40 1 5.3200 -8.8812 -2.7221 41 1 4.1239 -8.0507 -0.7657 42 1 1.5340 -5.5228 1.8313 43 1 1.3340 -6.8757 0.6912 44 1 0.1616 -4.7606 -0.0424 45 1 1.3735 -5.3371 -1.2142 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001412989027.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:54:25 Heat of formation + Delta-G solvation = -28.969523 kcal Electronic energy + Delta-G solvation = -29616.677135 eV Core-core repulsion = 25598.508577 eV Total energy + Delta-G solvation = -4018.168557 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.14292 -40.41836 -38.92075 -38.55140 -37.64762 -35.46107 -34.64077 -33.29044 -32.10093 -32.03251 -30.74598 -29.13896 -27.84660 -25.64302 -24.79985 -24.54693 -24.30167 -22.59057 -21.83629 -20.54916 -19.84476 -18.88676 -18.42725 -18.23024 -17.83742 -17.04787 -16.62829 -16.28254 -16.02394 -15.89319 -15.84702 -15.76081 -15.39947 -15.22647 -14.80905 -14.54714 -14.42646 -14.28369 -13.78883 -13.60358 -13.34001 -13.06923 -12.97754 -12.92334 -12.76282 -12.68463 -12.65034 -12.59359 -12.23028 -12.05260 -12.02551 -11.93608 -11.76790 -10.93054 -10.82509 -10.43174 -10.04731 -9.80338 -9.51536 -9.03515 -8.85039 -8.30116 -6.85102 -0.66459 -0.08215 0.91197 1.38456 1.41593 1.53046 2.00950 2.22441 2.44918 2.57676 2.72216 2.94313 3.15563 3.50374 3.58657 3.62729 3.76750 3.96954 4.00893 4.05139 4.11948 4.22976 4.24758 4.35452 4.39500 4.44267 4.52500 4.60780 4.65971 4.70256 4.76596 4.79150 4.87687 4.95629 4.97529 5.09614 5.17761 5.19974 5.36178 5.48990 5.54318 5.60443 5.72451 5.95689 5.96411 6.01248 6.12373 6.41684 6.58954 6.86879 6.91162 7.40899 8.45700 8.66148 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.013969 B = 0.002975 C = 0.002764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2003.971873 B = 9410.624150 C =10126.229362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.031 3.969 3 Si 0.992 3.008 4 H -0.274 1.274 5 H -0.255 1.255 6 H -0.253 1.253 7 C -0.571 4.571 8 H 0.091 0.909 9 C 0.542 3.458 10 O -0.632 6.632 11 N -0.647 5.647 12 C 0.129 3.871 13 C 0.057 3.943 14 N -0.523 5.523 15 C 0.102 3.898 16 C -0.120 4.120 17 C 0.089 3.911 18 N -0.533 5.533 19 C 0.343 3.657 20 O -0.482 6.482 21 C -0.136 4.136 22 C -0.093 4.093 23 C -0.116 4.116 24 C -0.098 4.098 25 C -0.105 4.105 26 C -0.011 4.011 27 C 0.059 3.941 28 C 0.123 3.877 29 H 0.274 0.726 30 H 0.059 0.941 31 H 0.080 0.920 32 H 0.023 0.977 33 H 0.085 0.915 34 H 0.051 0.949 35 H 0.108 0.892 36 H 0.160 0.840 37 H 0.422 0.578 38 H 0.151 0.849 39 H 0.154 0.846 40 H 0.150 0.850 41 H 0.144 0.856 42 H 0.020 0.980 43 H 0.112 0.888 44 H 0.056 0.944 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.837 -17.763 -2.237 25.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.185 4.185 3 Si 0.812 3.188 4 H -0.199 1.199 5 H -0.179 1.179 6 H -0.177 1.177 7 C -0.607 4.607 8 H 0.108 0.892 9 C 0.348 3.652 10 O -0.519 6.519 11 N -0.383 5.383 12 C 0.006 3.994 13 C -0.072 4.072 14 N -0.248 5.248 15 C -0.025 4.025 16 C -0.122 4.122 17 C -0.055 4.055 18 N -0.252 5.252 19 C 0.151 3.849 20 O -0.293 6.293 21 C -0.139 4.139 22 C -0.112 4.112 23 C -0.134 4.134 24 C -0.117 4.117 25 C -0.123 4.123 26 C -0.016 4.016 27 C -0.070 4.070 28 C -0.001 4.001 29 H 0.084 0.916 30 H 0.077 0.923 31 H 0.098 0.902 32 H 0.041 0.959 33 H 0.103 0.897 34 H 0.070 0.930 35 H 0.126 0.874 36 H 0.177 0.823 37 H 0.284 0.716 38 H 0.169 0.831 39 H 0.172 0.828 40 H 0.167 0.833 41 H 0.162 0.838 42 H 0.039 0.961 43 H 0.130 0.870 44 H 0.074 0.926 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 17.466 -18.015 -1.677 25.148 hybrid contribution -0.549 1.318 0.232 1.447 sum 16.917 -16.697 -1.446 23.813 Atomic orbital electron populations 1.70172 1.09501 1.28964 1.36551 1.26954 0.95471 1.04835 0.91190 0.85150 0.78331 0.75010 0.80333 1.19886 1.17909 1.17677 1.21465 0.94684 0.89966 1.54630 0.89157 1.18607 0.86529 0.84150 0.75875 1.90533 1.16543 1.87385 1.57468 1.48104 1.06364 1.05661 1.78211 1.21658 0.80263 0.99162 0.98339 1.22423 0.98945 0.89185 0.96630 1.62073 1.03942 1.05400 1.53364 1.20992 0.88844 0.96720 0.95967 1.20496 0.96699 1.00388 0.94620 1.21962 0.87221 0.97188 0.99095 1.66949 1.11050 1.19077 1.28137 1.19462 0.84709 0.92864 0.87899 1.84633 1.13518 1.44642 1.86479 1.19146 0.93626 1.04789 0.96374 1.21136 1.01270 0.97117 0.91684 1.21324 0.94150 0.98616 0.99287 1.21408 0.94952 0.97022 0.98349 1.21211 1.01048 0.97636 0.92419 1.18088 0.91780 0.96880 0.94844 1.22373 0.87641 1.00315 0.96666 1.21334 0.96262 0.83882 0.98628 0.91598 0.92256 0.90187 0.95885 0.89684 0.93032 0.87380 0.82306 0.71645 0.83132 0.82799 0.83259 0.83827 0.96139 0.86957 0.92565 0.91829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -50.65 11.84 21.83 0.26 -50.39 16 2 C 0.03 1.71 5.50 85.30 0.47 2.18 16 3 Si 0.99 41.00 29.56 68.60 2.03 43.03 16 4 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 5 H -0.26 -9.94 7.11 99.48 0.71 -9.24 16 6 H -0.25 -9.78 7.11 99.48 0.71 -9.07 16 7 C -0.57 -32.45 8.86 24.83 0.22 -32.23 16 8 H 0.09 4.60 5.74 -2.91 -0.02 4.58 16 9 C 0.54 31.80 7.63 86.36 0.66 32.46 16 10 O -0.63 -42.69 14.49 -4.29 -0.06 -42.75 16 11 N -0.65 -29.69 3.00 -822.11 -2.47 -32.15 16 12 C 0.13 4.81 6.50 86.50 0.56 5.38 16 13 C 0.06 1.72 5.30 86.54 0.46 2.18 16 14 N -0.52 -13.40 4.48 -898.89 -4.02 -17.42 16 15 C 0.10 2.06 4.45 85.56 0.38 2.44 16 16 C -0.12 -2.60 3.74 -19.74 -0.07 -2.68 16 17 C 0.09 2.08 10.11 84.07 0.85 2.93 16 18 N -0.53 -13.70 10.33 -309.05 -3.19 -16.89 16 19 C 0.34 7.70 7.82 85.40 0.67 8.37 16 20 O -0.48 -8.45 12.86 -87.95 -1.13 -9.58 16 21 C -0.14 -2.83 5.75 -21.24 -0.12 -2.95 16 22 C -0.09 -1.44 9.59 22.28 0.21 -1.23 16 23 C -0.12 -1.51 9.95 22.07 0.22 -1.30 16 24 C -0.10 -1.42 9.95 22.07 0.22 -1.20 16 25 C -0.11 -1.93 9.30 22.28 0.21 -1.72 16 26 C -0.01 -0.23 5.75 -21.29 -0.12 -0.35 16 27 C 0.06 1.68 5.62 86.38 0.49 2.17 16 28 C 0.12 4.71 6.61 86.35 0.57 5.28 16 29 H 0.27 15.33 8.29 -92.71 -0.77 14.56 16 30 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 31 H 0.08 3.16 5.46 -2.39 -0.01 3.14 16 32 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.08 2.37 6.21 -2.39 -0.01 2.35 16 34 H 0.05 1.02 7.92 -2.39 -0.02 1.00 16 35 H 0.11 1.76 7.52 -2.39 -0.02 1.74 16 36 H 0.16 3.32 7.95 -2.91 -0.02 3.29 16 37 H 0.42 3.27 9.06 -74.06 -0.67 2.60 16 38 H 0.15 1.69 7.68 -2.91 -0.02 1.67 16 39 H 0.15 1.10 8.06 -2.91 -0.02 1.08 16 40 H 0.15 1.44 8.06 -2.91 -0.02 1.41 16 41 H 0.14 2.50 6.79 -2.91 -0.02 2.48 16 42 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 43 H 0.11 2.42 8.11 -2.39 -0.02 2.40 16 44 H 0.06 2.50 7.04 -2.39 -0.02 2.48 16 45 H 0.06 2.24 8.14 -2.38 -0.02 2.22 16 Total: -1.00 -82.14 366.75 -2.35 -84.50 By element: Atomic # 1 Polarization: 21.55 SS G_CDS: 0.37 Total: 21.92 kcal Atomic # 6 Polarization: 13.87 SS G_CDS: 5.87 Total: 19.74 kcal Atomic # 7 Polarization: -107.43 SS G_CDS: -9.43 Total: -116.86 kcal Atomic # 8 Polarization: -51.13 SS G_CDS: -1.19 Total: -52.33 kcal Atomic # 14 Polarization: 41.00 SS G_CDS: 2.03 Total: 43.03 kcal Total: -82.14 -2.35 -84.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412989027.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.528 kcal (2) G-P(sol) polarization free energy of solvation -82.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds