Wall clock time and date at job start Wed Apr 1 2020 00:06:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31255 * 1 3 3 Si 1.86804 * 119.99992 * 2 1 4 4 H 1.48498 * 109.47122 * 239.99907 * 3 2 1 5 5 H 1.48499 * 109.47189 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47060 * 120.00066 * 3 2 1 7 7 C 1.39074 * 120.00269 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00471 * 160.39554 * 7 2 1 9 9 N 1.37107 * 119.99652 * 340.39756 * 7 2 1 10 10 C 1.35341 * 119.71432 * 318.88616 * 9 7 2 11 11 O 1.21721 * 121.28982 * 359.96272 * 10 9 7 12 12 C 1.46967 * 117.42429 * 179.97438 * 10 9 7 13 13 C 1.39361 * 121.91544 * 180.02562 * 12 10 9 14 14 C 1.37792 * 119.52133 * 179.97438 * 13 12 10 15 15 C 1.38878 * 120.57247 * 0.02562 * 14 13 12 16 16 C 1.37710 * 120.82520 * 359.97438 * 15 14 13 17 17 C 1.39633 * 119.68956 * 359.97438 * 16 15 14 18 18 N 1.35639 * 121.61580 * 180.29009 * 17 16 15 19 19 C 1.29822 * 121.62403 * 180.27881 * 18 17 16 20 20 C 1.50708 * 118.34858 * 179.72154 * 19 18 17 21 21 N 1.46900 * 109.46821 * 359.73020 * 20 19 18 22 22 C 1.48614 * 111.00103 * 54.42096 * 21 20 19 23 23 C 1.54560 * 104.64174 * 158.72599 * 22 21 20 24 24 H 1.09000 * 110.38113 * 95.18125 * 23 22 21 25 25 O 1.42901 * 110.37995 * 217.42700 * 23 22 21 26 26 C 1.53942 * 104.79044 * 336.26090 * 23 22 21 27 27 C 1.52300 * 121.55848 * 143.91952 * 26 23 22 28 28 C 1.52286 * 121.63257 * 216.27756 * 26 23 22 29 29 C 1.48726 * 110.99838 * 170.00321 * 21 20 19 30 30 H 0.97003 * 120.00118 * 359.97438 * 1 2 3 31 31 H 1.08002 * 120.24517 * 359.97438 * 13 12 10 32 32 H 1.08002 * 119.71577 * 180.02562 * 14 13 12 33 33 H 1.08001 * 119.58484 * 179.97438 * 15 14 13 34 34 H 1.08000 * 120.15400 * 180.02562 * 16 15 14 35 35 H 1.09000 * 109.46744 * 239.73022 * 20 19 18 36 36 H 1.08998 * 109.47268 * 119.73317 * 20 19 18 37 37 H 1.09001 * 110.40331 * 277.51038 * 22 21 20 38 38 H 1.08999 * 110.40286 * 39.93480 * 22 21 20 39 39 H 0.96693 * 114.00538 * 298.54238 * 25 23 22 40 40 H 1.09006 * 117.51716 * 218.45438 * 27 26 23 41 41 H 1.09000 * 117.52113 * 3.58795 * 27 26 23 42 42 H 1.08996 * 117.51158 * 356.53153 * 28 26 23 43 43 H 1.09000 * 117.51885 * 141.65847 * 28 26 23 44 44 H 1.08996 * 110.45279 * 320.25164 * 29 21 20 45 45 H 1.09006 * 110.45208 * 82.66874 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3125 0.0000 0.0000 3 14 2.2466 1.6178 0.0000 4 1 3.1003 1.6964 -1.2125 5 1 1.2816 2.7465 0.0006 6 1 3.1003 1.6964 1.2125 7 6 2.0080 -1.2044 -0.0005 8 1 3.0410 -1.2314 -0.3143 9 7 1.3820 -2.3575 0.3973 10 6 0.5556 -2.3368 1.4689 11 8 0.3544 -1.3109 2.0924 12 6 -0.0893 -3.6010 1.8509 13 6 -0.9574 -3.6863 2.9377 14 6 -1.5354 -4.8971 3.2516 15 6 -1.2594 -6.0288 2.4955 16 6 -0.4045 -5.9661 1.4177 17 6 0.1930 -4.7504 1.0787 18 7 1.0364 -4.6429 0.0218 19 6 1.5961 -3.5139 -0.2903 20 6 2.5260 -3.4798 -1.4759 21 7 2.6156 -4.8219 -2.0665 22 6 1.2663 -5.3490 -2.3982 23 6 1.5239 -6.4414 -3.4608 24 1 1.5872 -7.4222 -2.9894 25 8 0.4898 -6.4302 -4.4470 26 6 2.8740 -6.0616 -4.0955 27 6 3.8755 -7.1222 -4.5333 28 6 3.1468 -6.2728 -5.5788 29 6 3.3275 -4.7832 -3.3718 30 1 -0.4850 0.8401 0.0004 31 1 -1.1757 -2.8097 3.5297 32 1 -2.2090 -4.9666 4.0930 33 1 -1.7209 -6.9698 2.7560 34 1 -0.1978 -6.8528 0.8369 35 1 3.5159 -3.1585 -1.1520 36 1 2.1421 -2.7807 -2.2188 37 1 0.7995 -5.7822 -1.5135 38 1 0.6400 -4.5579 -2.8106 39 1 -0.3916 -6.6147 -4.0948 40 1 4.9327 -6.9165 -4.3653 41 1 3.5779 -8.1664 -4.4365 42 1 2.3700 -6.7583 -6.1694 43 1 3.7248 -5.5086 -6.0983 44 1 3.0346 -3.9000 -3.9393 45 1 4.4065 -4.7952 -3.2177 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001647147659.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:06:01 Heat of formation + Delta-G solvation = 27.079971 kcal Electronic energy + Delta-G solvation = -30390.892804 eV Core-core repulsion = 26375.154736 eV Total energy + Delta-G solvation = -4015.738069 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.61798 -39.53586 -37.65645 -36.73381 -35.67272 -35.10327 -33.81291 -31.97364 -30.45582 -30.08654 -28.54033 -27.03326 -25.85235 -24.96455 -23.00033 -22.45252 -22.28887 -21.08235 -20.56753 -19.11097 -18.79545 -17.85473 -17.12619 -16.89622 -15.68697 -15.68076 -15.26375 -15.06255 -14.71721 -14.60593 -14.29274 -14.05337 -13.96475 -13.73964 -13.32884 -13.01658 -12.93037 -12.65274 -12.35601 -12.26090 -11.92755 -11.88961 -11.67827 -11.48216 -11.36680 -11.19401 -11.12954 -10.94729 -10.80587 -10.62946 -10.54937 -10.26311 -10.04436 -9.62688 -9.58222 -8.97176 -8.70075 -8.40476 -8.38475 -8.06624 -7.09131 -6.73308 -4.57682 1.46390 1.63098 3.01137 3.10199 3.11385 3.18045 3.58892 3.73295 3.88219 4.08590 4.36102 4.42041 4.59149 4.65980 4.78722 4.87161 4.99779 5.08659 5.19430 5.34801 5.41614 5.46208 5.52535 5.60834 5.67038 5.71904 5.74746 5.83403 5.86036 5.93972 5.99296 6.02630 6.05620 6.15040 6.16834 6.24815 6.39389 6.56571 6.72507 6.77159 6.98607 7.04082 7.08176 7.18234 7.25569 7.46968 7.56716 7.74355 8.06415 8.41392 8.66565 9.11298 9.46108 10.28140 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.009148 B = 0.004810 C = 0.003364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3059.967704 B = 5820.358681 C = 8320.408568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.799 5.799 2 C 0.079 3.921 3 Si 0.930 3.070 4 H -0.268 1.268 5 H -0.279 1.279 6 H -0.266 1.266 7 C -0.386 4.386 8 H 0.108 0.892 9 N -0.349 5.349 10 C 0.520 3.480 11 O -0.501 6.501 12 C -0.209 4.209 13 C -0.038 4.038 14 C -0.177 4.177 15 C -0.089 4.089 16 C -0.133 4.133 17 C 0.167 3.833 18 N -0.553 5.553 19 C 0.362 3.638 20 C 0.112 3.888 21 N -0.483 5.483 22 C 0.006 3.994 23 C 0.129 3.871 24 H 0.066 0.934 25 O -0.567 6.567 26 C -0.125 4.125 27 C -0.160 4.160 28 C -0.154 4.154 29 C 0.066 3.934 30 H 0.281 0.719 31 H 0.123 0.877 32 H 0.116 0.884 33 H 0.117 0.883 34 H 0.124 0.876 35 H 0.100 0.900 36 H 0.070 0.930 37 H 0.129 0.871 38 H 0.043 0.957 39 H 0.378 0.622 40 H 0.096 0.904 41 H 0.093 0.907 42 H 0.099 0.901 43 H 0.092 0.908 44 H 0.049 0.951 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.622 -11.008 -5.808 12.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.426 5.426 2 C -0.138 4.138 3 Si 0.754 3.246 4 H -0.193 1.193 5 H -0.204 1.204 6 H -0.190 1.190 7 C -0.512 4.512 8 H 0.126 0.874 9 N -0.052 5.052 10 C 0.314 3.686 11 O -0.374 6.374 12 C -0.217 4.217 13 C -0.057 4.057 14 C -0.196 4.196 15 C -0.109 4.109 16 C -0.153 4.153 17 C 0.051 3.949 18 N -0.281 5.281 19 C 0.100 3.900 20 C -0.018 4.018 21 N -0.208 5.208 22 C -0.122 4.122 23 C 0.070 3.930 24 H 0.083 0.917 25 O -0.372 6.372 26 C -0.126 4.126 27 C -0.197 4.197 28 C -0.192 4.192 29 C -0.062 4.062 30 H 0.092 0.908 31 H 0.141 0.859 32 H 0.134 0.866 33 H 0.135 0.865 34 H 0.142 0.858 35 H 0.118 0.882 36 H 0.088 0.912 37 H 0.147 0.853 38 H 0.061 0.939 39 H 0.225 0.775 40 H 0.115 0.885 41 H 0.111 0.889 42 H 0.118 0.882 43 H 0.110 0.890 44 H 0.067 0.933 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 3.143 -11.036 -5.734 12.828 hybrid contribution -0.837 2.029 0.411 2.233 sum 2.306 -9.007 -5.323 10.713 Atomic orbital electron populations 1.69796 1.07219 1.29705 1.35915 1.25410 0.94991 1.00509 0.92885 0.85972 0.79417 0.79833 0.79377 1.19301 1.20416 1.19047 1.19570 0.96999 0.84143 1.50523 0.87446 1.42226 1.34274 1.08313 1.20369 1.18214 0.81712 0.88228 0.80419 1.90667 1.60929 1.33476 1.52362 1.20823 1.04883 0.94443 1.01541 1.20884 0.92936 0.97444 0.94432 1.20834 1.03892 0.92892 1.01978 1.20970 0.97134 0.97875 0.94878 1.20566 0.99698 0.96106 0.98920 1.18846 0.92842 0.92550 0.90694 1.68499 1.17633 1.22512 1.19472 1.22616 0.93078 0.83168 0.91151 1.20984 0.98079 0.90065 0.92645 1.65339 1.14298 1.20922 1.20226 1.24245 0.91391 0.97016 0.99581 1.22124 0.85556 0.98008 0.87317 0.91655 1.86460 1.19048 1.94738 1.36942 1.21556 0.95615 0.98101 0.97308 1.22902 0.97304 0.96206 1.03252 1.22726 1.02677 1.02706 0.91075 1.22577 0.99425 0.94686 0.89500 0.90841 0.85937 0.86639 0.86521 0.85820 0.88241 0.91235 0.85331 0.93898 0.77496 0.88522 0.88890 0.88248 0.88984 0.93267 0.90019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.91 11.54 55.50 0.64 -21.27 16 2 C 0.08 2.02 4.36 -17.49 -0.08 1.95 16 3 Si 0.93 19.55 29.60 -169.99 -5.03 14.52 16 4 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 5 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 6 H -0.27 -5.68 7.11 56.52 0.40 -5.27 16 7 C -0.39 -9.61 8.24 -14.88 -0.12 -9.73 16 8 H 0.11 2.42 7.07 -52.49 -0.37 2.05 16 9 N -0.35 -8.72 2.68 -59.56 -0.16 -8.88 16 10 C 0.52 13.80 6.93 -12.47 -0.09 13.71 16 11 O -0.50 -14.58 14.28 5.17 0.07 -14.51 16 12 C -0.21 -4.84 5.89 -104.77 -0.62 -5.46 16 13 C -0.04 -0.76 9.68 -39.33 -0.38 -1.14 16 14 C -0.18 -2.93 10.02 -39.51 -0.40 -3.32 16 15 C -0.09 -1.37 10.00 -39.54 -0.40 -1.77 16 16 C -0.13 -2.30 10.03 -39.25 -0.39 -2.69 16 17 C 0.17 3.50 6.63 -84.49 -0.56 2.94 16 18 N -0.55 -11.44 6.33 -8.09 -0.05 -11.49 16 19 C 0.36 7.87 7.21 -154.87 -1.12 6.75 16 20 C 0.11 2.02 4.19 -4.97 -0.02 2.00 16 21 N -0.48 -7.76 5.29 -231.51 -1.22 -8.98 16 22 C 0.01 0.09 5.00 -2.05 -0.01 0.08 16 23 C 0.13 1.73 4.30 -25.42 -0.11 1.62 16 24 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 25 O -0.57 -7.28 12.68 -35.23 -0.45 -7.72 16 26 C -0.13 -1.59 2.43 -154.35 -0.37 -1.97 16 27 C -0.16 -1.69 10.28 -27.01 -0.28 -1.96 16 28 C -0.15 -1.73 9.91 -27.02 -0.27 -1.99 16 29 C 0.07 0.90 6.28 -2.43 -0.02 0.88 16 30 H 0.28 7.28 8.31 -40.82 -0.34 6.94 16 31 H 0.12 2.48 7.83 -52.49 -0.41 2.07 16 32 H 0.12 1.56 8.06 -52.49 -0.42 1.14 16 33 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 34 H 0.12 1.85 8.06 -52.49 -0.42 1.43 16 35 H 0.10 1.69 7.58 -51.93 -0.39 1.29 16 36 H 0.07 1.29 7.78 -51.93 -0.40 0.89 16 37 H 0.13 2.19 5.73 -51.93 -0.30 1.89 16 38 H 0.04 0.75 7.93 -51.93 -0.41 0.34 16 39 H 0.38 3.49 9.11 45.56 0.41 3.91 16 40 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.10 1.15 7.83 -51.93 -0.41 0.74 16 43 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 44 H 0.05 0.68 7.81 -51.93 -0.41 0.28 16 45 H 0.08 1.00 8.12 -51.93 -0.42 0.58 16 LS Contribution 366.91 15.07 5.53 5.53 Total: -1.00 -30.99 366.91 -11.09 -42.08 By element: Atomic # 1 Polarization: 16.02 SS G_CDS: -5.20 Total: 10.82 kcal Atomic # 6 Polarization: 5.11 SS G_CDS: -5.22 Total: -0.11 kcal Atomic # 7 Polarization: -49.82 SS G_CDS: -0.79 Total: -50.62 kcal Atomic # 8 Polarization: -21.86 SS G_CDS: -0.37 Total: -22.23 kcal Atomic # 14 Polarization: 19.55 SS G_CDS: -5.03 Total: 14.52 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -30.99 -11.09 -42.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647147659.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.163 kcal (2) G-P(sol) polarization free energy of solvation -30.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.083 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds