Wall clock time and date at job start Wed Apr 1 2020 00:06:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31255 * 1 3 3 Si 1.86804 * 119.99992 * 2 1 4 4 H 1.48498 * 109.47122 * 239.99907 * 3 2 1 5 5 H 1.48499 * 109.47189 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47060 * 120.00066 * 3 2 1 7 7 C 1.39074 * 120.00269 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00471 * 160.39554 * 7 2 1 9 9 N 1.37107 * 119.99652 * 340.39756 * 7 2 1 10 10 C 1.35341 * 119.71432 * 318.88616 * 9 7 2 11 11 O 1.21721 * 121.28982 * 359.96272 * 10 9 7 12 12 C 1.46967 * 117.42429 * 179.97438 * 10 9 7 13 13 C 1.39361 * 121.91544 * 180.02562 * 12 10 9 14 14 C 1.37792 * 119.52133 * 179.97438 * 13 12 10 15 15 C 1.38878 * 120.57247 * 0.02562 * 14 13 12 16 16 C 1.37710 * 120.82520 * 359.97438 * 15 14 13 17 17 C 1.39633 * 119.68956 * 359.97438 * 16 15 14 18 18 N 1.35639 * 121.61580 * 180.29009 * 17 16 15 19 19 C 1.29822 * 121.62403 * 180.27881 * 18 17 16 20 20 C 1.50708 * 118.34858 * 179.72154 * 19 18 17 21 21 N 1.46900 * 109.46821 * 359.73020 * 20 19 18 22 22 C 1.48614 * 111.00103 * 54.42096 * 21 20 19 23 23 C 1.54560 * 104.64174 * 158.72599 * 22 21 20 24 24 H 1.09000 * 110.38113 * 95.18125 * 23 22 21 25 25 O 1.42901 * 110.37995 * 217.42700 * 23 22 21 26 26 C 1.53942 * 104.79044 * 336.26090 * 23 22 21 27 27 C 1.52300 * 121.55848 * 143.91952 * 26 23 22 28 28 C 1.52286 * 121.63257 * 216.27756 * 26 23 22 29 29 C 1.48726 * 110.99838 * 170.00321 * 21 20 19 30 30 H 0.97003 * 120.00118 * 359.97438 * 1 2 3 31 31 H 1.08002 * 120.24517 * 359.97438 * 13 12 10 32 32 H 1.08002 * 119.71577 * 180.02562 * 14 13 12 33 33 H 1.08001 * 119.58484 * 179.97438 * 15 14 13 34 34 H 1.08000 * 120.15400 * 180.02562 * 16 15 14 35 35 H 1.09000 * 109.46744 * 239.73022 * 20 19 18 36 36 H 1.08998 * 109.47268 * 119.73317 * 20 19 18 37 37 H 1.09001 * 110.40331 * 277.51038 * 22 21 20 38 38 H 1.08999 * 110.40286 * 39.93480 * 22 21 20 39 39 H 0.96693 * 114.00538 * 298.54238 * 25 23 22 40 40 H 1.09006 * 117.51716 * 218.45438 * 27 26 23 41 41 H 1.09000 * 117.52113 * 3.58795 * 27 26 23 42 42 H 1.08996 * 117.51158 * 356.53153 * 28 26 23 43 43 H 1.09000 * 117.51885 * 141.65847 * 28 26 23 44 44 H 1.08996 * 110.45279 * 320.25164 * 29 21 20 45 45 H 1.09006 * 110.45208 * 82.66874 * 29 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3125 0.0000 0.0000 3 14 2.2466 1.6178 0.0000 4 1 3.1003 1.6964 -1.2125 5 1 1.2816 2.7465 0.0006 6 1 3.1003 1.6964 1.2125 7 6 2.0080 -1.2044 -0.0005 8 1 3.0410 -1.2314 -0.3143 9 7 1.3820 -2.3575 0.3973 10 6 0.5556 -2.3368 1.4689 11 8 0.3544 -1.3109 2.0924 12 6 -0.0893 -3.6010 1.8509 13 6 -0.9574 -3.6863 2.9377 14 6 -1.5354 -4.8971 3.2516 15 6 -1.2594 -6.0288 2.4955 16 6 -0.4045 -5.9661 1.4177 17 6 0.1930 -4.7504 1.0787 18 7 1.0364 -4.6429 0.0218 19 6 1.5961 -3.5139 -0.2903 20 6 2.5260 -3.4798 -1.4759 21 7 2.6156 -4.8219 -2.0665 22 6 1.2663 -5.3490 -2.3982 23 6 1.5239 -6.4414 -3.4608 24 1 1.5872 -7.4222 -2.9894 25 8 0.4898 -6.4302 -4.4470 26 6 2.8740 -6.0616 -4.0955 27 6 3.8755 -7.1222 -4.5333 28 6 3.1468 -6.2728 -5.5788 29 6 3.3275 -4.7832 -3.3718 30 1 -0.4850 0.8401 0.0004 31 1 -1.1757 -2.8097 3.5297 32 1 -2.2090 -4.9666 4.0930 33 1 -1.7209 -6.9698 2.7560 34 1 -0.1978 -6.8528 0.8369 35 1 3.5159 -3.1585 -1.1520 36 1 2.1421 -2.7807 -2.2188 37 1 0.7995 -5.7822 -1.5135 38 1 0.6400 -4.5579 -2.8106 39 1 -0.3916 -6.6147 -4.0948 40 1 4.9327 -6.9165 -4.3653 41 1 3.5779 -8.1664 -4.4365 42 1 2.3700 -6.7583 -6.1694 43 1 3.7248 -5.5086 -6.0983 44 1 3.0346 -3.9000 -3.9393 45 1 4.4065 -4.7952 -3.2177 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001647147659.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:06:00 Heat of formation + Delta-G solvation = 5.981302 kcal Electronic energy + Delta-G solvation = -30391.807711 eV Core-core repulsion = 26375.154736 eV Total energy + Delta-G solvation = -4016.652976 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.30163 -40.66661 -39.23853 -38.38017 -36.69877 -36.41575 -35.53502 -33.77389 -32.00100 -31.54156 -29.87214 -28.29739 -27.66416 -26.26318 -24.66564 -23.70856 -23.26562 -22.58326 -22.01393 -20.55743 -20.14065 -19.49833 -18.54384 -18.15308 -17.48625 -16.88247 -16.80968 -16.43660 -16.02945 -16.01398 -15.65409 -15.53244 -15.47521 -15.24205 -14.72497 -14.50233 -14.22281 -14.05290 -13.90896 -13.66265 -13.52586 -13.20177 -13.07834 -12.98585 -12.78275 -12.58934 -12.49803 -12.28326 -12.26100 -12.15935 -11.69943 -11.33613 -11.24188 -11.09620 -10.82282 -10.62293 -10.30790 -10.21325 -9.92176 -9.39375 -8.81850 -8.55432 -6.51362 -0.12161 0.07884 1.31405 1.40714 1.46081 1.49928 1.98319 2.24087 2.39449 2.73872 2.85887 3.14559 3.21669 3.36279 3.47654 3.56937 3.72017 3.79706 3.94082 4.07596 4.15583 4.20255 4.26589 4.31838 4.41211 4.47507 4.58246 4.59609 4.64254 4.73000 4.86051 4.89770 4.93912 4.98239 5.09140 5.12055 5.13411 5.17311 5.35236 5.35713 5.37569 5.55584 5.57855 5.75308 5.88628 5.93463 6.02552 6.27990 6.58528 6.81650 6.87408 7.35062 7.60224 8.42647 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.009148 B = 0.004810 C = 0.003364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3059.967704 B = 5820.358681 C = 8320.408568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.850 5.850 2 C 0.031 3.969 3 Si 0.993 3.007 4 H -0.239 1.239 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.405 4.405 8 H 0.124 0.876 9 N -0.368 5.368 10 C 0.494 3.506 11 O -0.552 6.552 12 C -0.238 4.238 13 C -0.068 4.068 14 C -0.150 4.150 15 C -0.071 4.071 16 C -0.124 4.124 17 C 0.136 3.864 18 N -0.533 5.533 19 C 0.351 3.649 20 C 0.121 3.879 21 N -0.485 5.485 22 C 0.011 3.989 23 C 0.138 3.862 24 H 0.077 0.923 25 O -0.576 6.576 26 C -0.148 4.148 27 C -0.141 4.141 28 C -0.151 4.151 29 C 0.067 3.933 30 H 0.276 0.724 31 H 0.108 0.892 32 H 0.157 0.843 33 H 0.173 0.827 34 H 0.154 0.846 35 H 0.110 0.890 36 H 0.058 0.942 37 H 0.116 0.884 38 H 0.015 0.985 39 H 0.392 0.608 40 H 0.111 0.889 41 H 0.102 0.898 42 H 0.095 0.905 43 H 0.101 0.899 44 H 0.042 0.958 45 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.198 -14.610 -6.311 16.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.480 5.480 2 C -0.180 4.180 3 Si 0.814 3.186 4 H -0.163 1.163 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.531 4.531 8 H 0.141 0.859 9 N -0.072 5.072 10 C 0.290 3.710 11 O -0.430 6.430 12 C -0.245 4.245 13 C -0.088 4.088 14 C -0.168 4.168 15 C -0.090 4.090 16 C -0.143 4.143 17 C 0.021 3.979 18 N -0.259 5.259 19 C 0.087 3.913 20 C -0.008 4.008 21 N -0.209 5.209 22 C -0.118 4.118 23 C 0.078 3.922 24 H 0.095 0.905 25 O -0.383 6.383 26 C -0.149 4.149 27 C -0.178 4.178 28 C -0.188 4.188 29 C -0.060 4.060 30 H 0.085 0.915 31 H 0.126 0.874 32 H 0.174 0.826 33 H 0.190 0.810 34 H 0.172 0.828 35 H 0.128 0.872 36 H 0.076 0.924 37 H 0.134 0.866 38 H 0.034 0.966 39 H 0.241 0.759 40 H 0.129 0.871 41 H 0.121 0.879 42 H 0.113 0.887 43 H 0.120 0.880 44 H 0.060 0.940 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 3.723 -14.723 -6.268 16.429 hybrid contribution -1.158 2.815 0.640 3.111 sum 2.565 -11.908 -5.627 13.419 Atomic orbital electron populations 1.69920 1.09055 1.29885 1.39104 1.26412 0.95545 1.03966 0.92102 0.85029 0.78127 0.75433 0.79999 1.16254 1.20787 1.19741 1.19988 0.97766 0.84658 1.50674 0.85883 1.42324 1.34893 1.09219 1.20782 1.18904 0.82358 0.89062 0.80633 1.90589 1.63093 1.35192 1.54152 1.20980 1.06318 0.93844 1.03367 1.21006 0.94218 0.99074 0.94483 1.21354 1.01952 0.91352 1.02162 1.21586 0.95169 0.99468 0.92791 1.21017 0.98629 0.95293 0.99409 1.19349 0.94053 0.93543 0.90921 1.68626 1.16627 1.21760 1.18902 1.23302 0.93455 0.82484 0.92031 1.20927 0.97549 0.91202 0.91168 1.65352 1.14522 1.19236 1.21835 1.24119 0.90864 0.96955 0.99820 1.22013 0.86148 0.97255 0.86738 0.90489 1.86437 1.20012 1.94737 1.37101 1.21600 0.96018 0.98666 0.98577 1.23012 0.97516 0.96045 1.01244 1.22769 1.02743 1.03073 0.90223 1.22637 1.00023 0.95229 0.88154 0.91471 0.87369 0.82559 0.80986 0.82829 0.87182 0.92405 0.86615 0.96609 0.75873 0.87060 0.87944 0.88669 0.88016 0.94019 0.88333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -50.02 11.54 21.68 0.25 -49.77 16 2 C 0.03 1.68 4.36 84.98 0.37 2.05 16 3 Si 0.99 41.86 29.60 68.60 2.03 43.89 16 4 H -0.24 -8.86 7.11 99.48 0.71 -8.15 16 5 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 6 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 7 C -0.40 -21.25 8.24 84.07 0.69 -20.56 16 8 H 0.12 5.76 7.07 -2.91 -0.02 5.74 16 9 N -0.37 -19.47 2.68 -460.24 -1.23 -20.70 16 10 C 0.49 28.04 6.93 86.44 0.60 28.64 16 11 O -0.55 -34.81 14.28 -4.42 -0.06 -34.87 16 12 C -0.24 -11.44 5.89 -19.96 -0.12 -11.56 16 13 C -0.07 -2.80 9.68 22.43 0.22 -2.59 16 14 C -0.15 -4.46 10.02 22.32 0.22 -4.23 16 15 C -0.07 -1.83 10.00 22.30 0.22 -1.60 16 16 C -0.12 -3.87 10.03 22.48 0.23 -3.65 16 17 C 0.14 5.67 6.63 39.65 0.26 5.94 16 18 N -0.53 -22.26 6.33 -179.52 -1.14 -23.40 16 19 C 0.35 15.81 7.21 137.94 1.00 16.81 16 20 C 0.12 4.49 4.19 85.56 0.36 4.85 16 21 N -0.48 -15.34 5.29 -886.35 -4.69 -20.03 16 22 C 0.01 0.34 5.00 86.50 0.43 0.77 16 23 C 0.14 3.46 4.30 31.44 0.14 3.59 16 24 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 25 O -0.58 -13.95 12.68 -148.98 -1.89 -15.84 16 26 C -0.15 -3.45 2.43 -52.08 -0.13 -3.58 16 27 C -0.14 -2.52 10.28 30.41 0.31 -2.20 16 28 C -0.15 -2.99 9.91 30.41 0.30 -2.69 16 29 C 0.07 1.74 6.28 86.20 0.54 2.28 16 30 H 0.28 15.44 8.31 -92.71 -0.77 14.67 16 31 H 0.11 4.65 7.83 -2.91 -0.02 4.63 16 32 H 0.16 3.42 8.06 -2.91 -0.02 3.39 16 33 H 0.17 2.70 8.06 -2.91 -0.02 2.68 16 34 H 0.15 3.89 8.06 -2.91 -0.02 3.87 16 35 H 0.11 3.79 7.58 -2.39 -0.02 3.77 16 36 H 0.06 2.27 7.78 -2.39 -0.02 2.25 16 37 H 0.12 3.87 5.73 -2.39 -0.01 3.86 16 38 H 0.02 0.57 7.93 -2.39 -0.02 0.55 16 39 H 0.39 6.73 9.11 -74.06 -0.67 6.05 16 40 H 0.11 1.68 8.14 -2.38 -0.02 1.66 16 41 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 42 H 0.09 1.99 7.83 -2.39 -0.02 1.97 16 43 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 44 H 0.04 1.14 7.81 -2.39 -0.02 1.12 16 45 H 0.10 2.20 8.12 -2.38 -0.02 2.18 16 Total: -1.00 -74.41 366.91 -0.72 -75.13 By element: Atomic # 1 Polarization: 32.96 SS G_CDS: 0.36 Total: 33.32 kcal Atomic # 6 Polarization: 6.62 SS G_CDS: 5.65 Total: 12.27 kcal Atomic # 7 Polarization: -107.09 SS G_CDS: -6.81 Total: -113.90 kcal Atomic # 8 Polarization: -48.76 SS G_CDS: -1.95 Total: -50.71 kcal Atomic # 14 Polarization: 41.86 SS G_CDS: 2.03 Total: 43.89 kcal Total: -74.41 -0.72 -75.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647147659.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.113 kcal (2) G-P(sol) polarization free energy of solvation -74.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.132 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds