Wall clock time and date at job start Tue Mar 31 2020 23:56:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86807 * 120.00319 * 2 1 4 4 H 1.48497 * 109.46605 * 0.02562 * 3 2 1 5 5 H 1.48490 * 109.46953 * 120.00225 * 3 2 1 6 6 H 1.48494 * 109.46974 * 240.00676 * 3 2 1 7 7 C 1.38814 * 119.99920 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00069 * 161.12344 * 7 2 1 9 9 N 1.36935 * 120.00236 * 341.12471 * 7 2 1 10 10 C 1.47243 * 121.33617 * 333.73699 * 9 7 2 11 11 C 1.53273 * 107.62695 * 115.71761 * 10 9 7 12 12 C 1.50604 * 110.81441 * 47.65763 * 11 10 9 13 13 C 1.38983 * 117.60444 * 160.27195 * 12 11 10 14 14 C 1.37908 * 120.58108 * 179.39244 * 13 12 11 15 15 C 1.38265 * 119.82227 * 0.02562 * 14 13 12 16 16 C 1.37953 * 119.72115 * 0.19534 * 15 14 13 17 17 C 1.37675 * 122.87067 * 340.03594 * 12 11 10 18 18 C 1.46682 * 121.34216 * 154.01734 * 9 7 2 19 19 H 1.08998 * 109.43603 * 344.30372 * 18 9 7 20 20 C 1.52998 * 109.43035 * 104.17482 * 18 9 7 21 21 N 1.46500 * 109.47614 * 304.99697 * 20 18 9 22 22 C 1.34773 * 120.00767 * 180.02562 * 21 20 18 23 23 O 1.21281 * 119.99576 * 359.97438 * 22 21 20 24 24 C 1.50698 * 120.00231 * 180.02562 * 22 21 20 25 25 C 1.50705 * 109.47156 * 179.97438 * 24 22 21 26 26 C 1.41376 * 128.00871 * 269.68415 * 25 24 22 27 27 N 1.30177 * 106.39623 * 179.89374 * 26 25 24 28 28 O 1.20923 * 111.60375 * 0.38586 * 27 26 25 29 29 C 1.34043 * 111.56751 * 359.74775 * 28 27 26 30 30 H 0.97005 * 119.99854 * 359.97438 * 1 2 3 31 31 H 1.09000 * 109.77859 * 235.30238 * 10 9 7 32 32 H 1.09005 * 109.77603 * 356.11109 * 10 9 7 33 33 H 1.08998 * 109.31646 * 287.25219 * 11 10 9 34 34 H 1.08998 * 109.08164 * 167.91247 * 11 10 9 35 35 H 1.07995 * 119.70960 * 359.41481 * 13 12 11 36 36 H 1.07994 * 120.08948 * 180.02562 * 14 13 12 37 37 H 1.08005 * 120.13771 * 180.21908 * 15 14 13 38 38 H 1.08004 * 119.74584 * 179.97438 * 16 15 14 39 39 H 1.08993 * 109.47970 * 65.00013 * 20 18 9 40 40 H 1.09005 * 109.46985 * 185.00441 * 20 18 9 41 41 H 0.97009 * 119.99397 * 0.02562 * 21 20 18 42 42 H 1.09000 * 109.47295 * 299.99761 * 24 22 21 43 43 H 1.09004 * 109.47061 * 60.00276 * 24 22 21 44 44 H 1.08003 * 126.80191 * 0.02923 * 26 25 24 45 45 H 1.07992 * 126.77797 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2853 2.7464 0.0006 5 1 3.1040 1.6963 1.2124 6 1 3.1039 1.6964 -1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0467 -1.2272 -0.3031 9 7 1.3808 -2.3564 0.3826 10 6 0.2343 -2.3331 1.3061 11 6 -0.9892 -2.8488 0.5403 12 6 -0.6603 -4.1174 -0.2018 13 6 -1.7194 -4.9294 -0.5899 14 6 -1.4892 -6.0989 -1.2836 15 6 -0.1943 -6.4694 -1.5964 16 6 0.8591 -5.6676 -1.2084 17 6 0.6289 -4.4914 -0.5076 18 6 1.8254 -3.6661 -0.1057 19 1 2.4779 -3.5293 -0.9681 20 6 2.5931 -4.3889 1.0029 21 7 3.6888 -3.5376 1.4732 22 6 4.5057 -3.9708 2.4537 23 8 4.3334 -5.0653 2.9471 24 6 5.6323 -3.0949 2.9378 25 6 6.3886 -3.8068 4.0298 26 6 6.1524 -3.7637 5.4230 27 7 7.0480 -4.5329 5.9715 28 8 7.7824 -5.0212 5.1442 29 6 7.4557 -4.6316 3.9040 30 1 -0.4850 0.8401 0.0004 31 1 0.4360 -2.9786 2.1610 32 1 0.0561 -1.3132 1.6471 33 1 -1.3145 -2.0907 -0.1721 34 1 -1.7951 -3.0457 1.2473 35 1 -2.7315 -4.6418 -0.3465 36 1 -2.3181 -6.7237 -1.5816 37 1 -0.0084 -7.3824 -2.1426 38 1 1.8707 -5.9568 -1.4522 39 1 1.9186 -4.6036 1.8316 40 1 2.9997 -5.3225 0.6141 41 1 3.8263 -2.6621 1.0788 42 1 6.3069 -2.8794 2.1092 43 1 5.2254 -2.1616 3.3273 44 1 5.3803 -3.2053 5.9313 45 1 7.9466 -4.9184 2.9858 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001674271268.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:56:29 Heat of formation + Delta-G solvation = 74.380131 kcal Electronic energy + Delta-G solvation = -29534.507944 eV Core-core repulsion = 25520.820964 eV Total energy + Delta-G solvation = -4013.686980 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -44.92715 -39.70945 -39.02672 -36.36871 -34.64178 -34.10422 -32.39427 -32.22575 -31.94073 -29.93930 -29.31348 -28.40073 -26.71360 -24.24852 -22.99676 -22.68449 -22.19580 -21.73995 -21.17052 -19.98566 -18.71398 -17.93575 -17.60278 -17.03938 -16.42886 -15.95661 -15.63392 -15.47935 -15.07588 -14.76126 -14.55212 -14.24019 -14.01548 -13.55027 -13.41086 -13.27389 -13.08091 -12.72954 -12.57470 -12.43134 -12.35625 -11.96065 -11.74305 -11.29124 -11.26055 -11.16623 -11.10672 -10.88381 -10.75426 -10.51078 -10.35263 -10.16966 -9.93755 -9.77274 -9.60353 -9.30354 -8.66650 -8.57217 -8.28588 -7.95198 -6.91006 -5.99207 -3.42838 1.48834 1.83909 1.91272 2.23051 2.93604 3.21377 3.24809 3.30785 3.33312 3.69172 4.25980 4.27986 4.29962 4.68082 4.78328 5.06697 5.15910 5.18485 5.24696 5.33956 5.38693 5.40083 5.42301 5.54331 5.62737 5.66370 5.77862 5.85402 5.93721 5.99374 6.06584 6.19460 6.33261 6.40732 6.51193 6.55058 6.67109 6.71831 6.88533 6.93487 6.98932 7.29417 7.32229 7.47416 7.56701 7.61926 7.97687 8.20664 8.22485 8.59458 8.97408 9.60003 10.19086 11.08009 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.008989 B = 0.003771 C = 0.002853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3114.136949 B = 7424.125523 C = 9812.540202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.012 3.988 3 Si 0.902 3.098 4 H -0.290 1.290 5 H -0.283 1.283 6 H -0.282 1.282 7 C -0.262 4.262 8 H 0.068 0.932 9 N -0.579 5.579 10 C 0.165 3.835 11 C -0.096 4.096 12 C -0.040 4.040 13 C -0.134 4.134 14 C -0.128 4.128 15 C -0.139 4.139 16 C -0.119 4.119 17 C -0.080 4.080 18 C 0.194 3.806 19 H 0.077 0.923 20 C 0.115 3.885 21 N -0.704 5.704 22 C 0.508 3.492 23 O -0.551 6.551 24 C -0.067 4.067 25 C -0.176 4.176 26 C 0.005 3.995 27 N -0.370 5.370 28 O 0.094 5.906 29 C -0.051 4.051 30 H 0.256 0.744 31 H 0.007 0.993 32 H 0.095 0.905 33 H 0.101 0.899 34 H 0.048 0.952 35 H 0.113 0.887 36 H 0.111 0.889 37 H 0.112 0.888 38 H 0.114 0.886 39 H 0.059 0.941 40 H 0.057 0.943 41 H 0.411 0.589 42 H 0.106 0.894 43 H 0.110 0.890 44 H 0.188 0.812 45 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.632 -6.584 1.040 9.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.188 4.188 3 Si 0.731 3.269 4 H -0.216 1.216 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.391 4.391 8 H 0.086 0.914 9 N -0.300 5.300 10 C 0.040 3.960 11 C -0.135 4.135 12 C -0.040 4.040 13 C -0.152 4.152 14 C -0.146 4.146 15 C -0.157 4.157 16 C -0.137 4.137 17 C -0.082 4.082 18 C 0.085 3.915 19 H 0.095 0.905 20 C -0.012 4.012 21 N -0.356 5.356 22 C 0.293 3.707 23 O -0.430 6.430 24 C -0.108 4.108 25 C -0.180 4.180 26 C -0.174 4.174 27 N -0.074 5.074 28 O 0.029 5.971 29 C -0.132 4.132 30 H 0.066 0.934 31 H 0.025 0.975 32 H 0.113 0.887 33 H 0.119 0.881 34 H 0.066 0.934 35 H 0.131 0.869 36 H 0.130 0.870 37 H 0.130 0.870 38 H 0.132 0.868 39 H 0.078 0.922 40 H 0.075 0.925 41 H 0.248 0.752 42 H 0.124 0.876 43 H 0.128 0.872 44 H 0.205 0.795 45 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 6.663 -7.518 2.637 10.386 hybrid contribution -0.263 1.588 -1.205 2.011 sum 6.401 -5.930 1.433 8.842 Atomic orbital electron populations 1.69965 1.05297 1.25847 1.52117 1.24988 0.95222 0.98379 1.00221 0.86391 0.79030 0.83327 0.78104 1.21632 1.20910 1.20862 1.18975 0.93068 0.84580 1.42505 0.91420 1.44122 1.35906 0.99865 1.50128 1.20904 0.85114 1.00765 0.89262 1.21071 0.99402 0.93633 0.99351 1.19873 0.91928 0.95905 0.96278 1.21202 0.98609 0.95289 1.00141 1.20918 0.96571 0.97192 0.99913 1.20882 0.93023 0.99852 1.01982 1.21091 0.98650 0.94750 0.99245 1.20079 0.95266 0.94866 0.97995 1.19601 0.91553 0.86395 0.93956 0.90537 1.21886 0.88165 0.92694 0.98409 1.45919 1.30306 1.21667 1.37729 1.20368 0.83242 0.87223 0.79841 1.90689 1.72983 1.22026 1.57274 1.19923 0.95839 0.98634 0.96369 1.20787 0.98857 1.03522 0.94824 1.24932 1.00040 1.00151 0.92307 1.73834 1.05502 1.12008 1.16084 1.84781 1.44951 1.54240 1.13092 1.25722 0.98927 0.98555 0.90022 0.93355 0.97521 0.88652 0.88120 0.93393 0.86896 0.87047 0.86954 0.86790 0.92218 0.92506 0.75159 0.87569 0.87181 0.79480 0.76930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.57 10.15 55.49 0.56 -22.01 16 2 C 0.01 0.29 4.93 -17.43 -0.09 0.21 16 3 Si 0.90 19.18 29.59 -169.99 -5.03 14.15 16 4 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 6 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 7 C -0.26 -6.01 8.71 -15.06 -0.13 -6.14 16 8 H 0.07 1.46 7.31 -52.49 -0.38 1.08 16 9 N -0.58 -12.32 2.30 -166.02 -0.38 -12.70 16 10 C 0.16 3.54 5.49 -3.50 -0.02 3.52 16 11 C -0.10 -1.94 5.78 -27.79 -0.16 -2.10 16 12 C -0.04 -0.75 5.76 -104.60 -0.60 -1.36 16 13 C -0.13 -2.24 9.59 -39.43 -0.38 -2.62 16 14 C -0.13 -1.91 10.04 -39.69 -0.40 -2.31 16 15 C -0.14 -2.05 10.05 -39.68 -0.40 -2.45 16 16 C -0.12 -1.90 9.34 -39.46 -0.37 -2.27 16 17 C -0.08 -1.47 5.17 -104.55 -0.54 -2.01 16 18 C 0.19 3.59 2.50 -68.93 -0.17 3.42 16 19 H 0.08 1.42 7.98 -51.93 -0.41 1.01 16 20 C 0.11 1.97 5.00 -4.04 -0.02 1.95 16 21 N -0.70 -11.06 5.39 -60.30 -0.32 -11.39 16 22 C 0.51 7.76 7.82 -10.99 -0.09 7.67 16 23 O -0.55 -10.48 16.03 5.56 0.09 -10.39 16 24 C -0.07 -0.75 6.28 -29.03 -0.18 -0.93 16 25 C -0.18 -2.11 4.82 -104.42 -0.50 -2.61 16 26 C 0.00 0.06 12.16 -17.06 -0.21 -0.15 16 27 N -0.37 -5.22 12.07 30.35 0.37 -4.85 16 28 O 0.09 1.18 11.20 17.17 0.19 1.37 16 29 C -0.05 -0.53 12.26 29.74 0.36 -0.17 16 30 H 0.26 6.44 8.31 -40.82 -0.34 6.10 16 31 H 0.01 0.14 7.46 -51.93 -0.39 -0.24 16 32 H 0.10 2.28 5.91 -51.93 -0.31 1.97 16 33 H 0.10 2.32 7.16 -51.93 -0.37 1.95 16 34 H 0.05 0.88 8.11 -51.93 -0.42 0.45 16 35 H 0.11 1.69 8.05 -52.49 -0.42 1.27 16 36 H 0.11 1.36 8.06 -52.49 -0.42 0.94 16 37 H 0.11 1.35 8.06 -52.48 -0.42 0.93 16 38 H 0.11 1.59 8.05 -52.48 -0.42 1.17 16 39 H 0.06 1.15 7.53 -51.93 -0.39 0.76 16 40 H 0.06 0.94 8.03 -51.93 -0.42 0.52 16 41 H 0.41 6.34 6.69 -40.82 -0.27 6.06 16 42 H 0.11 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.11 1.11 8.14 -51.93 -0.42 0.69 16 44 H 0.19 2.04 8.06 -52.48 -0.42 1.62 16 45 H 0.21 1.38 8.06 -52.49 -0.42 0.95 16 LS Contribution 372.89 15.07 5.62 5.62 Total: -1.00 -29.34 372.89 -8.68 -38.03 By element: Atomic # 1 Polarization: 16.41 SS G_CDS: -5.88 Total: 10.53 kcal Atomic # 6 Polarization: -4.45 SS G_CDS: -3.89 Total: -8.35 kcal Atomic # 7 Polarization: -51.18 SS G_CDS: 0.22 Total: -50.96 kcal Atomic # 8 Polarization: -9.30 SS G_CDS: 0.28 Total: -9.02 kcal Atomic # 14 Polarization: 19.18 SS G_CDS: -5.03 Total: 14.15 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -29.34 -8.68 -38.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674271268.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.406 kcal (2) G-P(sol) polarization free energy of solvation -29.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.026 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds