Wall clock time and date at job start Tue Mar 31 2020 23:56:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86807 * 120.00319 * 2 1 4 4 H 1.48497 * 109.46605 * 0.02562 * 3 2 1 5 5 H 1.48490 * 109.46953 * 120.00225 * 3 2 1 6 6 H 1.48494 * 109.46974 * 240.00676 * 3 2 1 7 7 C 1.38814 * 119.99920 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00069 * 161.12344 * 7 2 1 9 9 N 1.36935 * 120.00236 * 341.12471 * 7 2 1 10 10 C 1.47243 * 121.33617 * 333.73699 * 9 7 2 11 11 C 1.53273 * 107.62695 * 115.71761 * 10 9 7 12 12 C 1.50604 * 110.81441 * 47.65763 * 11 10 9 13 13 C 1.38983 * 117.60444 * 160.27195 * 12 11 10 14 14 C 1.37908 * 120.58108 * 179.39244 * 13 12 11 15 15 C 1.38265 * 119.82227 * 0.02562 * 14 13 12 16 16 C 1.37953 * 119.72115 * 0.19534 * 15 14 13 17 17 C 1.37675 * 122.87067 * 340.03594 * 12 11 10 18 18 C 1.46682 * 121.34216 * 154.01734 * 9 7 2 19 19 H 1.08998 * 109.43603 * 344.30372 * 18 9 7 20 20 C 1.52998 * 109.43035 * 104.17482 * 18 9 7 21 21 N 1.46500 * 109.47614 * 304.99697 * 20 18 9 22 22 C 1.34773 * 120.00767 * 180.02562 * 21 20 18 23 23 O 1.21281 * 119.99576 * 359.97438 * 22 21 20 24 24 C 1.50698 * 120.00231 * 180.02562 * 22 21 20 25 25 C 1.50705 * 109.47156 * 179.97438 * 24 22 21 26 26 C 1.41376 * 128.00871 * 269.68415 * 25 24 22 27 27 N 1.30177 * 106.39623 * 179.89374 * 26 25 24 28 28 O 1.20923 * 111.60375 * 0.38586 * 27 26 25 29 29 C 1.34043 * 111.56751 * 359.74775 * 28 27 26 30 30 H 0.97005 * 119.99854 * 359.97438 * 1 2 3 31 31 H 1.09000 * 109.77859 * 235.30238 * 10 9 7 32 32 H 1.09005 * 109.77603 * 356.11109 * 10 9 7 33 33 H 1.08998 * 109.31646 * 287.25219 * 11 10 9 34 34 H 1.08998 * 109.08164 * 167.91247 * 11 10 9 35 35 H 1.07995 * 119.70960 * 359.41481 * 13 12 11 36 36 H 1.07994 * 120.08948 * 180.02562 * 14 13 12 37 37 H 1.08005 * 120.13771 * 180.21908 * 15 14 13 38 38 H 1.08004 * 119.74584 * 179.97438 * 16 15 14 39 39 H 1.08993 * 109.47970 * 65.00013 * 20 18 9 40 40 H 1.09005 * 109.46985 * 185.00441 * 20 18 9 41 41 H 0.97009 * 119.99397 * 0.02562 * 21 20 18 42 42 H 1.09000 * 109.47295 * 299.99761 * 24 22 21 43 43 H 1.09004 * 109.47061 * 60.00276 * 24 22 21 44 44 H 1.08003 * 126.80191 * 0.02923 * 26 25 24 45 45 H 1.07992 * 126.77797 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2853 2.7464 0.0006 5 1 3.1040 1.6963 1.2124 6 1 3.1039 1.6964 -1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0467 -1.2272 -0.3031 9 7 1.3808 -2.3564 0.3826 10 6 0.2343 -2.3331 1.3061 11 6 -0.9892 -2.8488 0.5403 12 6 -0.6603 -4.1174 -0.2018 13 6 -1.7194 -4.9294 -0.5899 14 6 -1.4892 -6.0989 -1.2836 15 6 -0.1943 -6.4694 -1.5964 16 6 0.8591 -5.6676 -1.2084 17 6 0.6289 -4.4914 -0.5076 18 6 1.8254 -3.6661 -0.1057 19 1 2.4779 -3.5293 -0.9681 20 6 2.5931 -4.3889 1.0029 21 7 3.6888 -3.5376 1.4732 22 6 4.5057 -3.9708 2.4537 23 8 4.3334 -5.0653 2.9471 24 6 5.6323 -3.0949 2.9378 25 6 6.3886 -3.8068 4.0298 26 6 6.1524 -3.7637 5.4230 27 7 7.0480 -4.5329 5.9715 28 8 7.7824 -5.0212 5.1442 29 6 7.4557 -4.6316 3.9040 30 1 -0.4850 0.8401 0.0004 31 1 0.4360 -2.9786 2.1610 32 1 0.0561 -1.3132 1.6471 33 1 -1.3145 -2.0907 -0.1721 34 1 -1.7951 -3.0457 1.2473 35 1 -2.7315 -4.6418 -0.3465 36 1 -2.3181 -6.7237 -1.5816 37 1 -0.0084 -7.3824 -2.1426 38 1 1.8707 -5.9568 -1.4522 39 1 1.9186 -4.6036 1.8316 40 1 2.9997 -5.3225 0.6141 41 1 3.8263 -2.6621 1.0788 42 1 6.3069 -2.8794 2.1092 43 1 5.2254 -2.1616 3.3273 44 1 5.3803 -3.2053 5.9313 45 1 7.9466 -4.9184 2.9858 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001674271268.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:56:28 Heat of formation + Delta-G solvation = 58.344473 kcal Electronic energy + Delta-G solvation = -29535.203302 eV Core-core repulsion = 25520.820964 eV Total energy + Delta-G solvation = -4014.382338 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -45.86937 -41.05598 -40.29838 -37.82029 -35.76184 -35.38989 -33.99934 -33.47499 -33.02650 -31.49262 -30.44903 -29.70238 -28.14111 -25.80980 -24.19871 -23.94818 -23.57913 -22.86542 -22.44213 -21.18128 -20.19557 -18.91109 -18.65369 -18.45637 -17.70996 -17.26739 -17.09887 -16.76255 -16.36281 -15.98115 -15.81179 -15.68472 -15.36953 -15.06184 -14.65359 -14.49762 -14.14205 -13.97575 -13.83271 -13.80382 -13.72317 -13.28167 -13.03920 -12.82954 -12.72971 -12.64099 -12.49554 -12.22068 -12.14859 -12.09358 -11.76486 -11.53503 -11.34190 -11.21741 -10.92409 -10.43734 -10.28942 -9.91289 -9.55776 -9.30297 -8.65452 -7.80066 -5.24544 0.57345 0.61681 0.63447 1.27256 1.55998 1.58508 1.62890 1.74843 2.37122 2.53935 2.57467 2.98551 3.36850 3.38122 3.59453 3.82153 3.90202 4.00883 4.07623 4.10933 4.18019 4.27788 4.31672 4.39215 4.45969 4.59312 4.63657 4.69252 4.77847 4.79037 4.82195 4.85223 4.98788 4.99366 5.13028 5.15305 5.25037 5.26652 5.54936 5.59494 5.65365 5.70147 5.71025 5.86228 6.00622 6.26727 6.42155 6.73920 7.16712 7.32484 7.38244 7.85366 8.43553 9.25651 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.008989 B = 0.003771 C = 0.002853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3114.136949 B = 7424.125523 C = 9812.540202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.039 4.039 3 Si 0.959 3.041 4 H -0.308 1.308 5 H -0.274 1.274 6 H -0.278 1.278 7 C -0.257 4.257 8 H 0.084 0.916 9 N -0.588 5.588 10 C 0.171 3.829 11 C -0.084 4.084 12 C -0.072 4.072 13 C -0.143 4.143 14 C -0.124 4.124 15 C -0.133 4.133 16 C -0.123 4.123 17 C -0.103 4.103 18 C 0.198 3.802 19 H 0.078 0.922 20 C 0.129 3.871 21 N -0.704 5.704 22 C 0.508 3.492 23 O -0.591 6.591 24 C -0.056 4.056 25 C -0.196 4.196 26 C -0.009 4.009 27 N -0.400 5.400 28 O 0.086 5.914 29 C -0.035 4.035 30 H 0.246 0.754 31 H 0.005 0.995 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.056 0.944 35 H 0.123 0.877 36 H 0.145 0.855 37 H 0.148 0.852 38 H 0.135 0.865 39 H 0.033 0.967 40 H 0.067 0.933 41 H 0.414 0.586 42 H 0.143 0.857 43 H 0.122 0.878 44 H 0.197 0.803 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.203 -8.105 -0.420 11.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.236 4.236 3 Si 0.788 3.212 4 H -0.235 1.235 5 H -0.200 1.200 6 H -0.203 1.203 7 C -0.387 4.387 8 H 0.101 0.899 9 N -0.309 5.309 10 C 0.046 3.954 11 C -0.123 4.123 12 C -0.073 4.073 13 C -0.161 4.161 14 C -0.142 4.142 15 C -0.150 4.150 16 C -0.142 4.142 17 C -0.104 4.104 18 C 0.090 3.910 19 H 0.096 0.904 20 C 0.003 3.997 21 N -0.355 5.355 22 C 0.296 3.704 23 O -0.472 6.472 24 C -0.096 4.096 25 C -0.201 4.201 26 C -0.188 4.188 27 N -0.106 5.106 28 O 0.024 5.976 29 C -0.116 4.116 30 H 0.056 0.944 31 H 0.023 0.977 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.075 0.925 35 H 0.141 0.859 36 H 0.162 0.838 37 H 0.166 0.834 38 H 0.153 0.847 39 H 0.051 0.949 40 H 0.086 0.914 41 H 0.252 0.748 42 H 0.161 0.839 43 H 0.140 0.860 44 H 0.214 0.786 45 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges 8.270 -9.050 1.172 12.315 hybrid contribution -0.765 1.934 -0.788 2.224 sum 7.505 -7.116 0.384 10.349 Atomic orbital electron populations 1.70139 1.06533 1.25484 1.54266 1.25646 0.95776 1.01009 1.01166 0.85477 0.77572 0.79746 0.78355 1.23509 1.19975 1.20347 1.19375 0.93723 0.85024 1.40535 0.89873 1.44196 1.35710 1.00700 1.50279 1.20696 0.86189 0.98959 0.89587 1.20816 0.98947 0.93815 0.98726 1.19886 0.93263 0.96066 0.98054 1.21390 0.98527 0.95828 1.00381 1.21322 0.97972 0.96484 0.98450 1.21333 0.92424 1.00485 1.00801 1.21345 1.00360 0.93934 0.98519 1.20163 0.94728 0.96223 0.99330 1.19638 0.91918 0.85228 0.94184 0.90392 1.21599 0.88083 0.93177 0.96880 1.45920 1.29980 1.21550 1.38059 1.21071 0.83561 0.87058 0.78758 1.90673 1.74137 1.24041 1.58366 1.19934 0.94748 0.97682 0.97227 1.20970 0.99844 1.04755 0.94495 1.25294 1.00100 1.00047 0.93321 1.73827 1.06477 1.13151 1.17141 1.84745 1.44824 1.54223 1.13854 1.26502 0.98082 0.96695 0.90329 0.94449 0.97719 0.91473 0.91519 0.92514 0.85876 0.83766 0.83426 0.84694 0.94862 0.91437 0.74843 0.83936 0.86021 0.78592 0.72910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.52 10.15 21.65 0.22 -48.30 16 2 C -0.04 -1.91 4.93 84.86 0.42 -1.49 16 3 Si 0.96 39.72 29.59 68.60 2.03 41.75 16 4 H -0.31 -13.54 7.11 99.48 0.71 -12.84 16 5 H -0.27 -10.81 7.11 99.48 0.71 -10.11 16 6 H -0.28 -11.16 7.11 99.48 0.71 -10.45 16 7 C -0.26 -11.76 8.71 84.03 0.73 -11.03 16 8 H 0.08 3.47 7.31 -2.91 -0.02 3.45 16 9 N -0.59 -25.29 2.30 -679.17 -1.56 -26.85 16 10 C 0.17 7.67 5.49 86.33 0.47 8.15 16 11 C -0.08 -3.56 5.78 29.91 0.17 -3.39 16 12 C -0.07 -2.77 5.76 -19.85 -0.11 -2.88 16 13 C -0.14 -4.62 9.59 22.37 0.21 -4.41 16 14 C -0.12 -3.33 10.04 22.20 0.22 -3.11 16 15 C -0.13 -3.42 10.05 22.21 0.22 -3.20 16 16 C -0.12 -3.65 9.34 22.35 0.21 -3.44 16 17 C -0.10 -3.71 5.17 -19.82 -0.10 -3.81 16 18 C 0.20 7.26 2.50 44.24 0.11 7.37 16 19 H 0.08 2.81 7.98 -2.39 -0.02 2.79 16 20 C 0.13 4.36 5.00 86.38 0.43 4.80 16 21 N -0.70 -21.22 5.39 -463.07 -2.49 -23.71 16 22 C 0.51 14.73 7.82 87.66 0.69 15.41 16 23 O -0.59 -21.98 16.03 -3.03 -0.05 -22.03 16 24 C -0.06 -1.10 6.28 29.10 0.18 -0.92 16 25 C -0.20 -4.33 4.82 -19.73 -0.10 -4.42 16 26 C -0.01 -0.23 12.16 85.71 1.04 0.81 16 27 N -0.40 -11.11 12.07 -59.26 -0.72 -11.83 16 28 O 0.09 2.06 11.20 71.61 0.80 2.86 16 29 C -0.03 -0.64 12.26 67.18 0.82 0.18 16 30 H 0.25 12.97 8.31 -92.70 -0.77 12.20 16 31 H 0.00 0.21 7.46 -2.39 -0.02 0.20 16 32 H 0.07 3.39 5.91 -2.38 -0.01 3.37 16 33 H 0.07 3.25 7.16 -2.39 -0.02 3.23 16 34 H 0.06 2.18 8.11 -2.39 -0.02 2.16 16 35 H 0.12 3.59 8.05 -2.91 -0.02 3.56 16 36 H 0.14 2.89 8.06 -2.91 -0.02 2.87 16 37 H 0.15 2.78 8.06 -2.91 -0.02 2.76 16 38 H 0.14 3.34 8.05 -2.91 -0.02 3.31 16 39 H 0.03 1.30 7.53 -2.39 -0.02 1.28 16 40 H 0.07 2.13 8.03 -2.38 -0.02 2.11 16 41 H 0.41 12.07 6.69 -92.70 -0.62 11.45 16 42 H 0.14 1.76 8.14 -2.39 -0.02 1.74 16 43 H 0.12 2.15 8.14 -2.38 -0.02 2.13 16 44 H 0.20 4.27 8.06 -2.91 -0.02 4.24 16 45 H 0.26 2.23 8.06 -2.91 -0.02 2.20 16 Total: -1.00 -66.09 372.89 4.27 -61.82 By element: Atomic # 1 Polarization: 31.26 SS G_CDS: 0.40 Total: 31.66 kcal Atomic # 6 Polarization: -11.01 SS G_CDS: 5.63 Total: -5.38 kcal Atomic # 7 Polarization: -106.13 SS G_CDS: -4.55 Total: -110.69 kcal Atomic # 8 Polarization: -19.92 SS G_CDS: 0.75 Total: -19.17 kcal Atomic # 14 Polarization: 39.72 SS G_CDS: 2.03 Total: 41.75 kcal Total: -66.09 4.27 -61.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674271268.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.166 kcal (2) G-P(sol) polarization free energy of solvation -66.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.821 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds