Wall clock time and date at job start Wed Apr 1 2020 00:03:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86801 * 120.00307 * 2 1 4 4 H 1.48493 * 109.47377 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47086 * 299.99930 * 3 2 1 6 6 H 1.48495 * 109.47100 * 59.99547 * 3 2 1 7 7 C 1.38806 * 119.99861 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00517 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00137 * 0.02562 * 7 2 1 10 10 C 1.46499 * 120.00222 * 180.02562 * 9 7 2 11 11 H 1.09000 * 109.46747 * 324.99903 * 10 9 7 12 12 C 1.53002 * 109.47138 * 205.00061 * 10 9 7 13 13 N 1.46506 * 109.47035 * 54.99480 * 12 10 9 14 14 C 1.34777 * 119.99873 * 179.97438 * 13 12 10 15 15 O 1.21646 * 120.00125 * 0.02562 * 14 13 12 16 16 C 1.47136 * 120.00207 * 180.02562 * 14 13 12 17 17 C 1.37942 * 120.54933 * 359.72350 * 16 14 13 18 18 N 1.33961 * 122.20103 * 179.72573 * 17 16 14 19 19 H 0.97005 * 118.59287 * 180.25674 * 18 17 16 20 20 C 1.37797 * 122.80448 * 0.58793 * 18 17 16 21 21 C 1.39273 * 120.52503 * 179.71131 * 20 18 17 22 22 C 1.37738 * 119.97390 * 179.97438 * 21 20 18 23 23 C 1.38785 * 120.72555 * 0.02562 * 22 21 20 24 24 C 1.37714 * 120.29020 * 359.93830 * 23 22 21 25 25 C 1.39495 * 119.61075 * 0.08346 * 24 23 22 26 26 C 1.47139 * 120.55381 * 180.02562 * 16 14 13 27 27 O 1.21855 * 121.41479 * 0.02562 * 26 16 14 28 28 C 1.52994 * 109.47599 * 84.99927 * 10 9 7 29 29 C 1.53010 * 117.49680 * 8.74633 * 28 10 9 30 30 C 1.53006 * 117.49475 * 300.09012 * 28 10 9 31 31 H 0.97008 * 119.99512 * 0.02562 * 1 2 3 32 32 H 0.97004 * 120.00084 * 359.97438 * 9 7 2 33 33 H 1.09004 * 109.46930 * 294.99710 * 12 10 9 34 34 H 1.09000 * 109.47312 * 174.99653 * 12 10 9 35 35 H 0.96999 * 120.00080 * 0.02562 * 13 12 10 36 36 H 1.08005 * 118.89874 * 0.02562 * 17 16 14 37 37 H 1.08008 * 120.01240 * 359.97438 * 21 20 18 38 38 H 1.08001 * 119.63503 * 180.02562 * 22 21 20 39 39 H 1.07997 * 119.85375 * 179.97438 * 23 22 21 40 40 H 1.07999 * 120.19735 * 180.02562 * 24 23 22 41 41 H 1.08995 * 115.55494 * 154.41682 * 28 10 9 42 42 H 1.08998 * 117.49719 * 0.02562 * 29 28 10 43 43 H 1.08994 * 117.49751 * 145.02607 * 29 28 10 44 44 H 1.09001 * 117.49279 * 214.97567 * 30 28 10 45 45 H 1.08996 * 117.50372 * 359.97438 * 30 28 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3964 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 2.0579 -3.6568 0.0017 11 1 2.9690 -3.5508 -0.5871 12 6 1.1811 -4.7524 -0.6082 13 7 0.7355 -4.3362 -1.9403 14 6 -0.0530 -5.1487 -2.6715 15 8 -0.3950 -6.2274 -2.2251 16 6 -0.5001 -4.7311 -4.0096 17 6 -0.1238 -3.5080 -4.5245 18 7 -0.5072 -3.0968 -5.7405 19 1 -0.2088 -2.2281 -6.0523 20 6 -1.3126 -3.8525 -6.5645 21 6 -1.6875 -3.3758 -7.8182 22 6 -2.4926 -4.1409 -8.6329 23 6 -2.9389 -5.3882 -8.2192 24 6 -2.5801 -5.8798 -6.9839 25 6 -1.7656 -5.1157 -6.1480 26 6 -1.3615 -5.6083 -4.8180 27 8 -1.7261 -6.6955 -4.4058 28 6 2.4207 -4.0351 1.4390 29 6 1.8113 -3.1975 2.5652 30 6 3.2977 -3.0593 2.2263 31 1 -0.4850 0.8402 -0.0004 32 1 0.3554 -2.3881 0.0005 33 1 0.3131 -4.9200 0.0295 34 1 1.7561 -5.6749 -0.6891 35 1 1.0085 -3.4762 -2.2964 36 1 0.5048 -2.8622 -3.9293 37 1 -1.3470 -2.4065 -8.1516 38 1 -2.7796 -3.7660 -9.6042 39 1 -3.5700 -5.9761 -8.8692 40 1 -2.9280 -6.8508 -6.6637 41 1 2.5618 -5.1000 1.6236 42 1 1.1516 -2.3774 2.2820 43 1 1.5519 -3.7114 3.4908 44 1 4.0154 -3.4824 2.9292 45 1 3.6165 -2.1481 1.7202 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690159220.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:03:40 Heat of formation + Delta-G solvation = 15.298573 kcal Electronic energy + Delta-G solvation = -28937.009861 eV Core-core repulsion = 24920.760913 eV Total energy + Delta-G solvation = -4016.248949 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.19526 -39.16733 -37.92411 -37.58652 -37.19207 -34.34421 -33.28917 -32.25633 -31.29394 -30.59505 -30.05405 -28.00473 -24.67654 -24.23794 -23.57630 -22.61683 -22.41294 -21.51864 -20.52834 -19.33012 -18.66819 -18.39116 -17.89749 -17.28213 -16.26999 -15.89960 -15.41166 -15.31018 -15.10473 -14.87082 -14.66208 -14.52381 -14.32298 -14.15308 -13.83013 -13.51978 -13.27586 -13.25211 -12.87992 -12.69082 -12.36182 -12.23610 -11.95980 -11.60136 -11.26566 -11.18134 -10.95988 -10.88776 -10.52643 -10.15005 -9.84707 -9.72788 -9.52548 -9.50783 -9.32067 -9.24427 -9.09019 -9.03179 -8.52752 -7.91360 -7.12605 -5.90488 -3.20556 0.53721 0.58557 1.47862 2.55405 2.68511 3.30555 3.38776 3.40644 3.45864 3.52945 4.00884 4.08534 4.31657 4.44084 4.50275 4.61573 4.71801 4.77516 4.84858 4.96212 5.28138 5.38067 5.41383 5.49211 5.53484 5.59461 5.67771 5.70143 5.76653 5.85632 6.01245 6.04218 6.07896 6.14172 6.25644 6.31190 6.38462 6.49848 6.65122 6.66216 6.73982 6.77724 6.95246 7.04068 7.27153 7.59824 7.94247 8.05958 8.26718 8.78200 9.39090 9.94173 10.30947 11.30686 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.012612 B = 0.003034 C = 0.002529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2219.537332 B = 9226.641327 C =11067.310738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.009 4.009 3 Si 0.901 3.099 4 H -0.281 1.281 5 H -0.293 1.293 6 H -0.292 1.292 7 C -0.238 4.238 8 H 0.072 0.928 9 N -0.718 5.718 10 C 0.192 3.808 11 H 0.057 0.943 12 C 0.122 3.878 13 N -0.718 5.718 14 C 0.573 3.427 15 O -0.530 6.530 16 C -0.324 4.324 17 C 0.215 3.785 18 N -0.596 5.596 19 H 0.423 0.577 20 C 0.183 3.817 21 C -0.169 4.169 22 C -0.062 4.062 23 C -0.157 4.157 24 C -0.032 4.032 25 C -0.183 4.183 26 C 0.432 3.568 27 O -0.452 6.452 28 C -0.177 4.177 29 C -0.163 4.163 30 C -0.176 4.176 31 H 0.255 0.745 32 H 0.387 0.613 33 H 0.065 0.935 34 H 0.063 0.937 35 H 0.401 0.599 36 H 0.174 0.826 37 H 0.134 0.866 38 H 0.132 0.868 39 H 0.131 0.869 40 H 0.140 0.860 41 H 0.086 0.914 42 H 0.118 0.882 43 H 0.069 0.931 44 H 0.071 0.929 45 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.815 -4.556 -16.624 17.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.205 4.205 3 Si 0.732 3.268 4 H -0.206 1.206 5 H -0.221 1.221 6 H -0.219 1.219 7 C -0.369 4.369 8 H 0.090 0.910 9 N -0.360 5.360 10 C 0.081 3.919 11 H 0.075 0.925 12 C -0.002 4.002 13 N -0.372 5.372 14 C 0.360 3.640 15 O -0.407 6.407 16 C -0.336 4.336 17 C 0.082 3.918 18 N -0.203 5.203 19 H 0.260 0.740 20 C 0.082 3.918 21 C -0.190 4.190 22 C -0.081 4.081 23 C -0.176 4.176 24 C -0.051 4.051 25 C -0.187 4.187 26 C 0.313 3.687 27 O -0.329 6.329 28 C -0.199 4.199 29 C -0.200 4.200 30 C -0.213 4.213 31 H 0.065 0.935 32 H 0.221 0.779 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.237 0.763 36 H 0.191 0.809 37 H 0.152 0.848 38 H 0.150 0.850 39 H 0.149 0.851 40 H 0.158 0.842 41 H 0.104 0.896 42 H 0.136 0.864 43 H 0.087 0.913 44 H 0.090 0.910 45 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -1.155 -5.836 -16.069 17.135 hybrid contribution 0.505 2.076 -0.097 2.139 sum -0.650 -3.760 -16.166 16.610 Atomic orbital electron populations 1.69679 1.04966 1.25561 1.57322 1.24703 0.95392 0.97464 1.02975 0.86222 0.78884 0.84487 0.77193 1.20599 1.22078 1.21912 1.19227 0.90945 0.83811 1.42884 0.91011 1.42518 1.05909 0.99504 1.88094 1.20008 0.94070 0.86073 0.91737 0.92524 1.21537 0.98736 0.97267 0.82661 1.45843 1.51733 1.21489 1.18096 1.17341 0.78612 0.84448 0.83613 1.90820 1.56273 1.22048 1.71514 1.21965 1.13924 0.97864 0.99804 1.22207 0.90883 0.94656 0.84103 1.40867 1.44820 1.20446 1.14178 0.74017 1.17934 0.92008 0.91029 0.90844 1.20726 1.03547 1.01765 0.92938 1.21096 0.94390 0.93659 0.98966 1.21145 1.02741 0.96793 0.96875 1.21166 0.92570 0.99068 0.92252 1.20346 1.04844 0.94910 0.98597 1.19345 0.78943 0.86058 0.84340 1.90733 1.49678 1.20557 1.71925 1.23061 1.05869 0.95414 0.95520 1.22910 0.96612 1.03512 0.96949 1.22852 0.93511 1.01878 1.03084 0.93529 0.77874 0.91675 0.91837 0.76268 0.80928 0.84794 0.85047 0.85118 0.84195 0.89552 0.86387 0.91283 0.91042 0.87991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -25.12 13.06 55.49 0.72 -24.39 16 2 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 3 Si 0.90 20.35 29.55 -169.99 -5.02 15.33 16 4 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 5 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 7 C -0.24 -5.62 8.15 -15.06 -0.12 -5.74 16 8 H 0.07 1.69 6.91 -52.49 -0.36 1.33 16 9 N -0.72 -15.29 3.08 -53.43 -0.16 -15.45 16 10 C 0.19 3.44 2.86 -67.93 -0.19 3.24 16 11 H 0.06 1.02 8.08 -51.93 -0.42 0.60 16 12 C 0.12 2.11 5.22 -4.04 -0.02 2.09 16 13 N -0.72 -11.97 5.34 -61.47 -0.33 -12.29 16 14 C 0.57 10.68 7.76 -12.65 -0.10 10.58 16 15 O -0.53 -12.13 15.55 -14.89 -0.23 -12.36 16 16 C -0.32 -5.08 6.04 -102.78 -0.62 -5.70 16 17 C 0.21 2.36 10.65 -16.73 -0.18 2.18 16 18 N -0.60 -5.00 5.21 -10.42 -0.05 -5.06 16 19 H 0.42 1.99 8.73 -40.82 -0.36 1.63 16 20 C 0.18 1.82 6.66 -83.94 -0.56 1.26 16 21 C -0.17 -1.22 9.86 -39.38 -0.39 -1.61 16 22 C -0.06 -0.42 10.01 -39.56 -0.40 -0.82 16 23 C -0.16 -1.25 10.03 -39.57 -0.40 -1.65 16 24 C -0.03 -0.35 9.65 -39.30 -0.38 -0.73 16 25 C -0.18 -2.37 5.89 -104.81 -0.62 -2.98 16 26 C 0.43 7.32 7.15 -32.21 -0.23 7.09 16 27 O -0.45 -9.37 15.85 -15.08 -0.24 -9.61 16 28 C -0.18 -3.06 5.71 -90.61 -0.52 -3.58 16 29 C -0.16 -3.03 9.74 -26.69 -0.26 -3.29 16 30 C -0.18 -3.10 9.87 -26.69 -0.26 -3.36 16 31 H 0.25 6.82 8.31 -40.82 -0.34 6.48 16 32 H 0.39 9.16 7.80 -40.82 -0.32 8.84 16 33 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.40 6.13 6.15 -40.82 -0.25 5.88 16 36 H 0.17 1.58 6.31 -52.48 -0.33 1.25 16 37 H 0.13 0.58 8.06 -52.48 -0.42 0.15 16 38 H 0.13 0.52 8.06 -52.49 -0.42 0.09 16 39 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 40 H 0.14 1.54 7.79 -52.49 -0.41 1.13 16 41 H 0.09 1.36 8.11 -51.93 -0.42 0.94 16 42 H 0.12 2.62 6.68 -51.93 -0.35 2.27 16 43 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 44 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 45 H 0.10 1.99 6.22 -51.93 -0.32 1.66 16 LS Contribution 377.54 15.07 5.69 5.69 Total: -1.00 -33.99 377.54 -10.60 -44.59 By element: Atomic # 1 Polarization: 22.52 SS G_CDS: -5.63 Total: 16.89 kcal Atomic # 6 Polarization: 2.00 SS G_CDS: -5.34 Total: -3.33 kcal Atomic # 7 Polarization: -57.37 SS G_CDS: 0.18 Total: -57.19 kcal Atomic # 8 Polarization: -21.50 SS G_CDS: -0.47 Total: -21.97 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.99 -10.60 -44.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690159220.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.892 kcal (2) G-P(sol) polarization free energy of solvation -33.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.594 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds