Wall clock time and date at job start Wed Apr 1 2020 00:03:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86801 * 120.00307 * 2 1 4 4 H 1.48493 * 109.47377 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47086 * 299.99930 * 3 2 1 6 6 H 1.48495 * 109.47100 * 59.99547 * 3 2 1 7 7 C 1.38806 * 119.99861 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00517 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00137 * 0.02562 * 7 2 1 10 10 C 1.46499 * 120.00222 * 180.02562 * 9 7 2 11 11 H 1.09000 * 109.46747 * 324.99903 * 10 9 7 12 12 C 1.53002 * 109.47138 * 205.00061 * 10 9 7 13 13 N 1.46506 * 109.47035 * 54.99480 * 12 10 9 14 14 C 1.34777 * 119.99873 * 179.97438 * 13 12 10 15 15 O 1.21646 * 120.00125 * 0.02562 * 14 13 12 16 16 C 1.47136 * 120.00207 * 180.02562 * 14 13 12 17 17 C 1.37942 * 120.54933 * 359.72350 * 16 14 13 18 18 N 1.33961 * 122.20103 * 179.72573 * 17 16 14 19 19 H 0.97005 * 118.59287 * 180.25674 * 18 17 16 20 20 C 1.37797 * 122.80448 * 0.58793 * 18 17 16 21 21 C 1.39273 * 120.52503 * 179.71131 * 20 18 17 22 22 C 1.37738 * 119.97390 * 179.97438 * 21 20 18 23 23 C 1.38785 * 120.72555 * 0.02562 * 22 21 20 24 24 C 1.37714 * 120.29020 * 359.93830 * 23 22 21 25 25 C 1.39495 * 119.61075 * 0.08346 * 24 23 22 26 26 C 1.47139 * 120.55381 * 180.02562 * 16 14 13 27 27 O 1.21855 * 121.41479 * 0.02562 * 26 16 14 28 28 C 1.52994 * 109.47599 * 84.99927 * 10 9 7 29 29 C 1.53010 * 117.49680 * 8.74633 * 28 10 9 30 30 C 1.53006 * 117.49475 * 300.09012 * 28 10 9 31 31 H 0.97008 * 119.99512 * 0.02562 * 1 2 3 32 32 H 0.97004 * 120.00084 * 359.97438 * 9 7 2 33 33 H 1.09004 * 109.46930 * 294.99710 * 12 10 9 34 34 H 1.09000 * 109.47312 * 174.99653 * 12 10 9 35 35 H 0.96999 * 120.00080 * 0.02562 * 13 12 10 36 36 H 1.08005 * 118.89874 * 0.02562 * 17 16 14 37 37 H 1.08008 * 120.01240 * 359.97438 * 21 20 18 38 38 H 1.08001 * 119.63503 * 180.02562 * 22 21 20 39 39 H 1.07997 * 119.85375 * 179.97438 * 23 22 21 40 40 H 1.07999 * 120.19735 * 180.02562 * 24 23 22 41 41 H 1.08995 * 115.55494 * 154.41682 * 28 10 9 42 42 H 1.08998 * 117.49719 * 0.02562 * 29 28 10 43 43 H 1.08994 * 117.49751 * 145.02607 * 29 28 10 44 44 H 1.09001 * 117.49279 * 214.97567 * 30 28 10 45 45 H 1.08996 * 117.50372 * 359.97438 * 30 28 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3964 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 2.0579 -3.6568 0.0017 11 1 2.9690 -3.5508 -0.5871 12 6 1.1811 -4.7524 -0.6082 13 7 0.7355 -4.3362 -1.9403 14 6 -0.0530 -5.1487 -2.6715 15 8 -0.3950 -6.2274 -2.2251 16 6 -0.5001 -4.7311 -4.0096 17 6 -0.1238 -3.5080 -4.5245 18 7 -0.5072 -3.0968 -5.7405 19 1 -0.2088 -2.2281 -6.0523 20 6 -1.3126 -3.8525 -6.5645 21 6 -1.6875 -3.3758 -7.8182 22 6 -2.4926 -4.1409 -8.6329 23 6 -2.9389 -5.3882 -8.2192 24 6 -2.5801 -5.8798 -6.9839 25 6 -1.7656 -5.1157 -6.1480 26 6 -1.3615 -5.6083 -4.8180 27 8 -1.7261 -6.6955 -4.4058 28 6 2.4207 -4.0351 1.4390 29 6 1.8113 -3.1975 2.5652 30 6 3.2977 -3.0593 2.2263 31 1 -0.4850 0.8402 -0.0004 32 1 0.3554 -2.3881 0.0005 33 1 0.3131 -4.9200 0.0295 34 1 1.7561 -5.6749 -0.6891 35 1 1.0085 -3.4762 -2.2964 36 1 0.5048 -2.8622 -3.9293 37 1 -1.3470 -2.4065 -8.1516 38 1 -2.7796 -3.7660 -9.6042 39 1 -3.5700 -5.9761 -8.8692 40 1 -2.9280 -6.8508 -6.6637 41 1 2.5618 -5.1000 1.6236 42 1 1.1516 -2.3774 2.2820 43 1 1.5519 -3.7114 3.4908 44 1 4.0154 -3.4824 2.9292 45 1 3.6165 -2.1481 1.7202 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690159220.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:03:40 Heat of formation + Delta-G solvation = -6.602066 kcal Electronic energy + Delta-G solvation = -28937.959544 eV Core-core repulsion = 24920.760913 eV Total energy + Delta-G solvation = -4017.198632 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.11963 -40.49683 -39.24264 -38.82782 -38.18018 -35.83645 -35.02532 -33.36868 -32.49028 -31.78300 -30.99433 -29.55619 -25.94737 -25.22261 -25.07181 -23.90037 -23.34371 -22.95284 -21.82436 -20.72700 -19.73019 -19.41318 -19.02600 -18.84006 -17.48817 -16.89776 -16.81026 -16.62361 -16.36724 -16.27775 -15.78309 -15.68547 -15.36668 -15.31250 -15.11707 -14.88969 -14.61298 -14.44992 -14.39080 -13.92327 -13.63565 -13.10252 -12.90985 -12.89331 -12.84781 -12.62249 -12.53900 -12.27910 -12.08258 -11.89227 -11.55467 -11.22744 -11.01527 -10.86588 -10.60857 -10.43810 -10.42528 -10.08033 -9.95081 -8.96007 -8.86980 -7.83569 -5.11882 -0.35927 -0.24875 0.65092 1.50995 1.56673 1.59948 1.62307 1.74838 2.23000 2.41465 2.62027 2.94143 3.11457 3.16006 3.50913 3.55635 3.68951 3.80571 3.91419 4.00225 4.02937 4.24980 4.29307 4.31309 4.35513 4.37895 4.52854 4.55569 4.60770 4.71255 4.80706 4.88687 4.97163 4.98470 5.01642 5.20829 5.28815 5.37474 5.45721 5.47690 5.52068 5.60600 5.69420 5.71001 5.87360 6.09252 6.35362 6.70519 6.82381 7.40277 7.44279 8.13702 8.41222 9.38583 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.012612 B = 0.003034 C = 0.002529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2219.537332 B = 9226.641327 C =11067.310738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.963 5.963 2 C -0.063 4.063 3 Si 0.956 3.044 4 H -0.269 1.269 5 H -0.294 1.294 6 H -0.309 1.309 7 C -0.215 4.215 8 H 0.078 0.922 9 N -0.720 5.720 10 C 0.197 3.803 11 H 0.067 0.933 12 C 0.130 3.870 13 N -0.708 5.708 14 C 0.570 3.430 15 O -0.586 6.586 16 C -0.381 4.381 17 C 0.263 3.737 18 N -0.567 5.567 19 H 0.447 0.553 20 C 0.168 3.832 21 C -0.150 4.150 22 C -0.053 4.053 23 C -0.143 4.143 24 C -0.060 4.060 25 C -0.209 4.209 26 C 0.415 3.585 27 O -0.522 6.522 28 C -0.172 4.172 29 C -0.175 4.175 30 C -0.166 4.166 31 H 0.246 0.754 32 H 0.374 0.626 33 H 0.044 0.956 34 H 0.073 0.927 35 H 0.409 0.591 36 H 0.198 0.802 37 H 0.177 0.823 38 H 0.175 0.825 39 H 0.158 0.842 40 H 0.122 0.878 41 H 0.110 0.890 42 H 0.079 0.921 43 H 0.087 0.913 44 H 0.100 0.900 45 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.732 -2.298 -19.732 19.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.614 5.614 2 C -0.255 4.255 3 Si 0.787 3.213 4 H -0.193 1.193 5 H -0.222 1.222 6 H -0.237 1.237 7 C -0.347 4.347 8 H 0.096 0.904 9 N -0.360 5.360 10 C 0.087 3.913 11 H 0.085 0.915 12 C 0.005 3.995 13 N -0.361 5.361 14 C 0.360 3.640 15 O -0.468 6.468 16 C -0.393 4.393 17 C 0.124 3.876 18 N -0.174 5.174 19 H 0.289 0.711 20 C 0.067 3.933 21 C -0.170 4.170 22 C -0.072 4.072 23 C -0.161 4.161 24 C -0.079 4.079 25 C -0.212 4.212 26 C 0.302 3.698 27 O -0.405 6.405 28 C -0.193 4.193 29 C -0.212 4.212 30 C -0.203 4.203 31 H 0.055 0.945 32 H 0.206 0.794 33 H 0.062 0.938 34 H 0.092 0.908 35 H 0.246 0.754 36 H 0.215 0.785 37 H 0.195 0.805 38 H 0.192 0.808 39 H 0.175 0.825 40 H 0.140 0.860 41 H 0.128 0.872 42 H 0.097 0.903 43 H 0.105 0.895 44 H 0.118 0.882 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 0.450 -3.519 -19.251 19.576 hybrid contribution 0.018 1.437 0.686 1.592 sum 0.468 -2.082 -18.566 18.688 Atomic orbital electron populations 1.69821 1.06277 1.25383 1.59931 1.25257 0.95879 0.99979 1.04428 0.85338 0.78460 0.81380 0.76108 1.19323 1.22180 1.23747 1.19459 0.91141 0.84326 1.39743 0.90408 1.42566 1.05295 1.00216 1.87905 1.20095 0.93941 0.84684 0.92551 0.91478 1.21422 0.97864 0.97505 0.82693 1.45706 1.51288 1.21480 1.17632 1.17809 0.77870 0.83718 0.84607 1.90771 1.58519 1.24476 1.73006 1.21627 1.17739 1.00485 0.99418 1.22320 0.88234 0.92578 0.84444 1.40960 1.42743 1.20919 1.12800 0.71122 1.18129 0.92727 0.90225 0.92261 1.21250 1.01784 1.03077 0.90906 1.21657 0.92698 0.92452 1.00343 1.21520 1.01655 0.97599 0.95347 1.21213 0.93810 0.98949 0.93906 1.20262 1.06792 0.96960 0.97228 1.20015 0.78348 0.85447 0.86013 1.90672 1.52836 1.23199 1.73789 1.23068 1.05199 0.96665 0.94341 1.22771 0.96937 1.03117 0.98379 1.22848 0.93176 1.01140 1.03153 0.94463 0.79376 0.93768 0.90842 0.75351 0.78492 0.80544 0.80777 0.82466 0.86016 0.87173 0.90272 0.89467 0.88190 0.89885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -52.86 13.06 21.65 0.28 -52.58 16 2 C -0.06 -3.15 5.50 84.86 0.47 -2.69 16 3 Si 0.96 41.56 29.55 68.60 2.03 43.58 16 4 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 5 H -0.29 -12.73 7.11 99.48 0.71 -12.02 16 6 H -0.31 -14.22 7.11 99.48 0.71 -13.51 16 7 C -0.22 -10.00 8.15 84.03 0.69 -9.32 16 8 H 0.08 3.52 6.91 -2.91 -0.02 3.50 16 9 N -0.72 -30.58 3.08 -322.95 -0.99 -31.58 16 10 C 0.20 6.89 2.86 44.99 0.13 7.02 16 11 H 0.07 2.27 8.08 -2.39 -0.02 2.25 16 12 C 0.13 4.56 5.22 86.38 0.45 5.01 16 13 N -0.71 -24.16 5.34 -466.62 -2.49 -26.65 16 14 C 0.57 22.66 7.76 86.58 0.67 23.33 16 15 O -0.59 -29.26 15.55 15.07 0.23 -29.03 16 16 C -0.38 -12.59 6.04 -18.67 -0.11 -12.70 16 17 C 0.26 5.44 10.65 84.30 0.90 6.34 16 18 N -0.57 -7.75 5.21 -186.88 -0.97 -8.73 16 19 H 0.45 1.98 8.73 -92.70 -0.81 1.17 16 20 C 0.17 2.89 6.66 39.01 0.26 3.15 16 21 C -0.15 -1.39 9.86 22.40 0.22 -1.16 16 22 C -0.05 -0.44 10.01 22.28 0.22 -0.22 16 23 C -0.14 -1.89 10.03 22.28 0.22 -1.67 16 24 C -0.06 -1.36 9.65 22.45 0.22 -1.14 16 25 C -0.21 -5.54 5.89 -19.99 -0.12 -5.66 16 26 C 0.41 15.38 7.15 27.05 0.19 15.57 16 27 O -0.52 -24.44 15.85 14.40 0.23 -24.21 16 28 C -0.17 -5.68 5.71 -10.79 -0.06 -5.74 16 29 C -0.17 -6.39 9.74 30.62 0.30 -6.10 16 30 C -0.17 -5.51 9.87 30.62 0.30 -5.21 16 31 H 0.25 13.44 8.31 -92.70 -0.77 12.66 16 32 H 0.37 18.07 7.80 -92.71 -0.72 17.35 16 33 H 0.04 1.74 8.14 -2.38 -0.02 1.72 16 34 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 35 H 0.41 12.33 6.15 -92.71 -0.57 11.76 16 36 H 0.20 3.12 6.31 -2.91 -0.02 3.10 16 37 H 0.18 0.20 8.06 -2.91 -0.02 0.17 16 38 H 0.17 0.10 8.06 -2.91 -0.02 0.07 16 39 H 0.16 1.21 8.06 -2.91 -0.02 1.19 16 40 H 0.12 3.07 7.79 -2.91 -0.02 3.05 16 41 H 0.11 3.19 8.11 -2.39 -0.02 3.17 16 42 H 0.08 3.58 6.68 -2.39 -0.02 3.56 16 43 H 0.09 2.84 8.14 -2.39 -0.02 2.82 16 44 H 0.10 2.77 8.14 -2.39 -0.02 2.75 16 45 H 0.08 3.09 6.22 -2.39 -0.01 3.07 16 Total: -1.00 -82.62 377.54 2.23 -80.39 By element: Atomic # 1 Polarization: 41.01 SS G_CDS: -1.03 Total: 39.98 kcal Atomic # 6 Polarization: 3.87 SS G_CDS: 4.95 Total: 8.82 kcal Atomic # 7 Polarization: -115.36 SS G_CDS: -4.17 Total: -119.54 kcal Atomic # 8 Polarization: -53.70 SS G_CDS: 0.46 Total: -53.23 kcal Atomic # 14 Polarization: 41.56 SS G_CDS: 2.03 Total: 43.58 kcal Total: -82.62 2.23 -80.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690159220.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.784 kcal (2) G-P(sol) polarization free energy of solvation -82.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds