Wall clock time and date at job start Wed Apr 1 2020 00:14:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86794 * 120.00332 * 2 1 4 4 H 1.48501 * 109.47178 * 239.99855 * 3 2 1 5 5 H 1.48498 * 109.47026 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47490 * 119.99834 * 3 2 1 7 7 C 1.38820 * 119.99963 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00082 * 160.28506 * 7 2 1 9 9 N 1.36940 * 119.99691 * 340.28888 * 7 2 1 10 10 C 1.46496 * 120.00133 * 320.53208 * 9 7 2 11 11 C 1.52999 * 109.47211 * 270.00244 * 10 9 7 12 12 N 1.46502 * 109.47255 * 180.02562 * 11 10 9 13 13 C 1.34778 * 119.99713 * 180.02562 * 12 11 10 14 14 O 1.21492 * 120.00014 * 359.97438 * 13 12 11 15 15 C 1.48344 * 119.99653 * 179.71633 * 13 12 11 16 16 C 1.41919 * 126.84272 * 179.97438 * 15 13 12 17 17 C 1.36716 * 103.81368 * 179.91767 * 16 15 13 18 18 C 1.47858 * 126.81487 * 180.09261 * 17 16 15 19 19 C 1.39562 * 120.14228 * 0.02562 * 18 17 16 20 20 C 1.37962 * 119.85065 * 179.74450 * 19 18 17 21 21 C 1.38357 * 120.14273 * 0.51139 * 20 19 18 22 22 C 1.38348 * 120.29211 * 359.76097 * 21 20 19 23 23 C 1.37964 * 120.14600 * 359.97438 * 22 21 20 24 24 O 1.34459 * 106.36346 * 0.34860 * 17 16 15 25 25 N 1.20873 * 111.74111 * 359.76036 * 24 17 16 26 26 C 1.46501 * 119.99712 * 140.53111 * 9 7 2 27 27 C 1.52997 * 117.49963 * 3.29115 * 26 9 7 28 28 C 1.52999 * 60.00136 * 252.50686 * 27 26 9 29 29 H 0.96999 * 119.99466 * 355.01388 * 1 2 3 30 30 H 1.09004 * 109.46962 * 150.00383 * 10 9 7 31 31 H 1.08997 * 109.47089 * 30.00050 * 10 9 7 32 32 H 1.09000 * 109.47266 * 59.99463 * 11 10 9 33 33 H 1.09011 * 109.46836 * 300.00034 * 11 10 9 34 34 H 0.96997 * 119.99669 * 359.97438 * 12 11 10 35 35 H 1.07999 * 128.09409 * 0.03860 * 16 15 13 36 36 H 1.07998 * 120.07757 * 359.97287 * 19 18 17 37 37 H 1.08006 * 119.92849 * 180.27768 * 20 19 18 38 38 H 1.08001 * 119.85365 * 179.74632 * 21 20 19 39 39 H 1.08008 * 119.92859 * 179.97438 * 22 21 20 40 40 H 1.07991 * 120.07666 * 180.02562 * 23 22 21 41 41 H 1.08999 * 115.54966 * 148.99565 * 26 9 7 42 42 H 1.09002 * 117.50070 * 359.97438 * 27 26 9 43 43 H 1.08998 * 117.49948 * 145.02292 * 27 26 9 44 44 H 1.09003 * 117.49926 * 252.51611 * 28 27 26 45 45 H 1.08999 * 117.51965 * 107.47485 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1040 1.6962 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0428 -1.2298 -0.3150 9 7 1.3857 -2.3532 0.4011 10 6 0.4638 -2.3284 1.5393 11 6 1.2389 -2.6034 2.8295 12 7 0.3170 -2.5792 3.9677 13 6 0.7799 -2.7969 5.2146 14 8 1.9617 -3.0137 5.3946 15 6 -0.1526 -2.7661 6.3679 16 6 0.1750 -2.9744 7.7330 17 6 -1.0218 -2.8401 8.3801 18 6 -1.2609 -2.9586 9.8343 19 6 -0.2006 -3.2349 10.6987 20 6 -0.4296 -3.3390 12.0552 21 6 -1.7088 -3.1807 12.5579 22 6 -2.7653 -2.9123 11.7059 23 6 -2.5489 -2.8002 10.3479 24 8 -1.9391 -2.5844 7.4308 25 7 -1.4443 -2.5469 6.3286 26 6 1.6394 -3.6093 -0.3088 27 6 2.6699 -3.5862 -1.4395 28 6 1.1796 -3.7032 -1.7651 29 1 -0.4849 0.8369 0.0730 30 1 -0.3006 -3.0937 1.4046 31 1 -0.0098 -1.3487 1.6019 32 1 2.0034 -1.8382 2.9642 33 1 1.7127 -3.5832 2.7668 34 1 -0.6265 -2.4057 3.8240 35 1 1.1436 -3.1872 8.1608 36 1 0.7976 -3.3632 10.3070 37 1 0.3908 -3.5483 12.7257 38 1 -1.8835 -3.2672 13.6202 39 1 -3.7616 -2.7901 12.1047 40 1 -3.3743 -2.5903 9.6839 41 1 1.5775 -4.5129 0.2977 42 1 3.1589 -2.6362 -1.6554 43 1 3.2863 -4.4746 -1.5769 44 1 0.8155 -4.6687 -2.1166 45 1 0.6879 -2.8305 -2.1948 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714666500.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:14:44 Heat of formation + Delta-G solvation = 101.896245 kcal Electronic energy + Delta-G solvation = -27744.222308 eV Core-core repulsion = 23731.728516 eV Total energy + Delta-G solvation = -4012.493792 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -45.19873 -39.51548 -39.32252 -37.11537 -34.89627 -34.27471 -33.57908 -33.11698 -31.43241 -30.86379 -29.87138 -27.91724 -25.16968 -24.13745 -24.06667 -22.86898 -22.18888 -21.65102 -21.24367 -20.08675 -19.72301 -18.61087 -17.96203 -16.98722 -16.72989 -16.18302 -15.73628 -15.58044 -15.33047 -15.26514 -14.92439 -14.57003 -14.23909 -13.92046 -13.90277 -13.65098 -13.42394 -13.40190 -12.87046 -12.65467 -12.03973 -11.95194 -11.68212 -11.61598 -11.49374 -11.06688 -10.78561 -10.73481 -10.67374 -10.58385 -10.37138 -10.23062 -10.08091 -9.87351 -9.63798 -9.44366 -9.30608 -8.75877 -8.69883 -8.52277 -6.62137 -5.86702 -3.53740 0.22014 0.92219 1.19604 1.81118 2.57432 3.12136 3.27675 3.33334 3.37915 3.38913 3.41949 3.87018 4.17935 4.40550 4.44922 4.50411 4.63532 4.76956 4.87491 4.92093 4.95168 5.09365 5.19384 5.26157 5.29261 5.40785 5.54141 5.63713 5.89561 5.95527 5.96625 5.99016 6.02222 6.04058 6.17369 6.25311 6.42734 6.43736 6.49465 6.58056 6.70599 6.91927 7.04423 7.22528 7.43507 7.63057 7.74174 7.88623 8.29930 8.42226 9.06307 9.67036 10.25010 11.08904 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.018080 B = 0.002016 C = 0.001938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.300514 B =13884.219577 C =14447.677016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.016 3.984 3 Si 0.898 3.102 4 H -0.279 1.279 5 H -0.289 1.289 6 H -0.280 1.280 7 C -0.264 4.264 8 H 0.066 0.934 9 N -0.545 5.545 10 C 0.141 3.859 11 C 0.097 3.903 12 N -0.700 5.700 13 C 0.590 3.410 14 O -0.528 6.528 15 C -0.016 4.016 16 C -0.165 4.165 17 C 0.003 3.997 18 C -0.020 4.020 19 C -0.090 4.090 20 C -0.117 4.117 21 C -0.108 4.108 22 C -0.118 4.118 23 C -0.094 4.094 24 O 0.129 5.871 25 N -0.326 5.326 26 C 0.118 3.882 27 C -0.194 4.194 28 C -0.219 4.219 29 H 0.256 0.744 30 H 0.034 0.966 31 H 0.100 0.900 32 H 0.071 0.929 33 H 0.056 0.944 34 H 0.405 0.595 35 H 0.183 0.817 36 H 0.132 0.868 37 H 0.131 0.869 38 H 0.126 0.874 39 H 0.129 0.871 40 H 0.134 0.866 41 H 0.087 0.913 42 H 0.098 0.902 43 H 0.074 0.926 44 H 0.069 0.931 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.627 -7.377 23.286 25.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.185 4.185 3 Si 0.726 3.274 4 H -0.205 1.205 5 H -0.215 1.215 6 H -0.207 1.207 7 C -0.393 4.393 8 H 0.083 0.917 9 N -0.262 5.262 10 C 0.014 3.986 11 C -0.028 4.028 12 N -0.351 5.351 13 C 0.372 3.628 14 O -0.403 6.403 15 C -0.174 4.174 16 C -0.187 4.187 17 C -0.060 4.060 18 C -0.021 4.021 19 C -0.108 4.108 20 C -0.135 4.135 21 C -0.126 4.126 22 C -0.136 4.136 23 C -0.112 4.112 24 O 0.051 5.949 25 N -0.025 5.025 26 C 0.009 3.991 27 C -0.232 4.232 28 C -0.260 4.260 29 H 0.066 0.934 30 H 0.053 0.947 31 H 0.117 0.883 32 H 0.090 0.910 33 H 0.074 0.926 34 H 0.239 0.761 35 H 0.200 0.800 36 H 0.150 0.850 37 H 0.149 0.851 38 H 0.144 0.856 39 H 0.147 0.853 40 H 0.151 0.849 41 H 0.105 0.895 42 H 0.116 0.884 43 H 0.093 0.907 44 H 0.088 0.912 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -5.693 -7.110 22.210 24.005 hybrid contribution 0.609 0.829 0.281 1.067 sum -5.084 -6.281 22.491 23.898 Atomic orbital electron populations 1.70042 1.05527 1.26469 1.50279 1.25268 0.95067 0.98951 0.99237 0.86460 0.79284 0.83133 0.78498 1.20497 1.21516 1.20659 1.19009 0.93446 0.84945 1.41928 0.91652 1.43141 1.51005 1.03430 1.28648 1.21010 0.91042 1.03174 0.83400 1.22510 0.93450 1.01475 0.85357 1.46013 1.13303 1.69625 1.06117 1.16891 0.86158 0.78175 0.81544 1.90789 1.15318 1.49558 1.84674 1.23584 0.91232 1.06150 0.96462 1.22603 0.99841 1.05206 0.91022 1.22444 0.88144 1.04173 0.91242 1.17595 0.94844 1.03709 0.85980 1.21172 0.98324 0.98205 0.93124 1.21101 0.97451 1.00217 0.94768 1.21361 0.92834 0.98221 1.00165 1.21133 0.99578 0.99919 0.93000 1.21337 0.95839 0.98054 0.95988 1.84859 1.34811 1.64647 1.10548 1.74171 1.10792 1.16147 1.01401 1.21256 1.00954 0.90315 0.86562 1.23025 0.92188 1.01922 1.06072 1.23341 0.96886 1.01014 1.04749 0.93379 0.94741 0.88251 0.91029 0.92559 0.76095 0.79976 0.85035 0.85148 0.85562 0.85260 0.84852 0.89515 0.88390 0.90722 0.91216 0.88911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.45 11.50 55.49 0.64 -23.81 16 2 C 0.02 0.43 4.98 -17.43 -0.09 0.34 16 3 Si 0.90 21.28 29.60 -169.99 -5.03 16.25 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.26 -6.94 8.47 -15.05 -0.13 -7.07 16 8 H 0.07 1.73 6.75 -52.49 -0.35 1.38 16 9 N -0.55 -13.12 2.75 -165.66 -0.46 -13.57 16 10 C 0.14 3.12 5.45 -4.04 -0.02 3.10 16 11 C 0.10 1.95 6.00 -4.04 -0.02 1.93 16 12 N -0.70 -12.44 5.55 -61.08 -0.34 -12.78 16 13 C 0.59 10.52 7.85 -12.10 -0.09 10.43 16 14 O -0.53 -10.78 16.95 5.37 0.09 -10.69 16 15 C -0.02 -0.24 7.18 -82.62 -0.59 -0.83 16 16 C -0.16 -2.01 10.34 -38.72 -0.40 -2.41 16 17 C 0.00 0.03 7.15 -36.20 -0.26 -0.23 16 18 C -0.02 -0.17 5.87 -104.97 -0.62 -0.79 16 19 C -0.09 -0.65 9.58 -39.19 -0.38 -1.03 16 20 C -0.12 -0.69 10.03 -39.64 -0.40 -1.08 16 21 C -0.11 -0.58 10.04 -39.50 -0.40 -0.98 16 22 C -0.12 -0.69 10.03 -39.64 -0.40 -1.09 16 23 C -0.09 -0.69 9.73 -39.19 -0.38 -1.08 16 24 O 0.13 1.58 11.01 16.06 0.18 1.76 16 25 N -0.33 -4.69 11.81 33.35 0.39 -4.29 16 26 C 0.12 2.50 6.56 -67.93 -0.45 2.06 16 27 C -0.19 -3.83 9.80 -26.73 -0.26 -4.10 16 28 C -0.22 -4.46 10.36 -26.73 -0.28 -4.74 16 29 H 0.26 6.91 8.32 -40.82 -0.34 6.57 16 30 H 0.03 0.72 8.07 -51.93 -0.42 0.30 16 31 H 0.10 2.47 5.59 -51.93 -0.29 2.18 16 32 H 0.07 1.61 8.14 -51.93 -0.42 1.19 16 33 H 0.06 1.13 8.14 -51.92 -0.42 0.71 16 34 H 0.40 6.61 8.23 -40.82 -0.34 6.27 16 35 H 0.18 1.85 7.46 -52.49 -0.39 1.46 16 36 H 0.13 0.79 7.15 -52.49 -0.38 0.42 16 37 H 0.13 0.48 8.06 -52.48 -0.42 0.06 16 38 H 0.13 0.40 8.06 -52.49 -0.42 -0.02 16 39 H 0.13 0.48 8.06 -52.48 -0.42 0.06 16 40 H 0.13 0.85 7.96 -52.49 -0.42 0.44 16 41 H 0.09 1.67 8.14 -51.93 -0.42 1.25 16 42 H 0.10 2.11 6.46 -51.93 -0.34 1.77 16 43 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 44 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 45 H 0.09 2.16 8.14 -51.93 -0.42 1.74 16 LS Contribution 388.94 15.07 5.86 5.86 Total: -1.00 -30.66 388.94 -9.68 -40.35 By element: Atomic # 1 Polarization: 14.35 SS G_CDS: -5.86 Total: 8.49 kcal Atomic # 6 Polarization: -2.41 SS G_CDS: -5.16 Total: -7.56 kcal Atomic # 7 Polarization: -54.69 SS G_CDS: 0.24 Total: -54.45 kcal Atomic # 8 Polarization: -9.20 SS G_CDS: 0.27 Total: -8.93 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.03 Total: 16.25 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -30.66 -9.68 -40.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714666500.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.243 kcal (2) G-P(sol) polarization free energy of solvation -30.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.347 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds