Wall clock time and date at job start Wed Apr 1 2020 00:14:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86794 * 120.00332 * 2 1 4 4 H 1.48501 * 109.47178 * 239.99855 * 3 2 1 5 5 H 1.48498 * 109.47026 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47490 * 119.99834 * 3 2 1 7 7 C 1.38820 * 119.99963 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00082 * 160.28506 * 7 2 1 9 9 N 1.36940 * 119.99691 * 340.28888 * 7 2 1 10 10 C 1.46496 * 120.00133 * 320.53208 * 9 7 2 11 11 C 1.52999 * 109.47211 * 270.00244 * 10 9 7 12 12 N 1.46502 * 109.47255 * 180.02562 * 11 10 9 13 13 C 1.34778 * 119.99713 * 180.02562 * 12 11 10 14 14 O 1.21492 * 120.00014 * 359.97438 * 13 12 11 15 15 C 1.48344 * 119.99653 * 179.71633 * 13 12 11 16 16 C 1.41919 * 126.84272 * 179.97438 * 15 13 12 17 17 C 1.36716 * 103.81368 * 179.91767 * 16 15 13 18 18 C 1.47858 * 126.81487 * 180.09261 * 17 16 15 19 19 C 1.39562 * 120.14228 * 0.02562 * 18 17 16 20 20 C 1.37962 * 119.85065 * 179.74450 * 19 18 17 21 21 C 1.38357 * 120.14273 * 0.51139 * 20 19 18 22 22 C 1.38348 * 120.29211 * 359.76097 * 21 20 19 23 23 C 1.37964 * 120.14600 * 359.97438 * 22 21 20 24 24 O 1.34459 * 106.36346 * 0.34860 * 17 16 15 25 25 N 1.20873 * 111.74111 * 359.76036 * 24 17 16 26 26 C 1.46501 * 119.99712 * 140.53111 * 9 7 2 27 27 C 1.52997 * 117.49963 * 3.29115 * 26 9 7 28 28 C 1.52999 * 60.00136 * 252.50686 * 27 26 9 29 29 H 0.96999 * 119.99466 * 355.01388 * 1 2 3 30 30 H 1.09004 * 109.46962 * 150.00383 * 10 9 7 31 31 H 1.08997 * 109.47089 * 30.00050 * 10 9 7 32 32 H 1.09000 * 109.47266 * 59.99463 * 11 10 9 33 33 H 1.09011 * 109.46836 * 300.00034 * 11 10 9 34 34 H 0.96997 * 119.99669 * 359.97438 * 12 11 10 35 35 H 1.07999 * 128.09409 * 0.03860 * 16 15 13 36 36 H 1.07998 * 120.07757 * 359.97287 * 19 18 17 37 37 H 1.08006 * 119.92849 * 180.27768 * 20 19 18 38 38 H 1.08001 * 119.85365 * 179.74632 * 21 20 19 39 39 H 1.08008 * 119.92859 * 179.97438 * 22 21 20 40 40 H 1.07991 * 120.07666 * 180.02562 * 23 22 21 41 41 H 1.08999 * 115.54966 * 148.99565 * 26 9 7 42 42 H 1.09002 * 117.50070 * 359.97438 * 27 26 9 43 43 H 1.08998 * 117.49948 * 145.02292 * 27 26 9 44 44 H 1.09003 * 117.49926 * 252.51611 * 28 27 26 45 45 H 1.08999 * 117.51965 * 107.47485 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1040 1.6962 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0428 -1.2298 -0.3150 9 7 1.3857 -2.3532 0.4011 10 6 0.4638 -2.3284 1.5393 11 6 1.2389 -2.6034 2.8295 12 7 0.3170 -2.5792 3.9677 13 6 0.7799 -2.7969 5.2146 14 8 1.9617 -3.0137 5.3946 15 6 -0.1526 -2.7661 6.3679 16 6 0.1750 -2.9744 7.7330 17 6 -1.0218 -2.8401 8.3801 18 6 -1.2609 -2.9586 9.8343 19 6 -0.2006 -3.2349 10.6987 20 6 -0.4296 -3.3390 12.0552 21 6 -1.7088 -3.1807 12.5579 22 6 -2.7653 -2.9123 11.7059 23 6 -2.5489 -2.8002 10.3479 24 8 -1.9391 -2.5844 7.4308 25 7 -1.4443 -2.5469 6.3286 26 6 1.6394 -3.6093 -0.3088 27 6 2.6699 -3.5862 -1.4395 28 6 1.1796 -3.7032 -1.7651 29 1 -0.4849 0.8369 0.0730 30 1 -0.3006 -3.0937 1.4046 31 1 -0.0098 -1.3487 1.6019 32 1 2.0034 -1.8382 2.9642 33 1 1.7127 -3.5832 2.7668 34 1 -0.6265 -2.4057 3.8240 35 1 1.1436 -3.1872 8.1608 36 1 0.7976 -3.3632 10.3070 37 1 0.3908 -3.5483 12.7257 38 1 -1.8835 -3.2672 13.6202 39 1 -3.7616 -2.7901 12.1047 40 1 -3.3743 -2.5903 9.6839 41 1 1.5775 -4.5129 0.2977 42 1 3.1589 -2.6362 -1.6554 43 1 3.2863 -4.4746 -1.5769 44 1 0.8155 -4.6687 -2.1166 45 1 0.6879 -2.8305 -2.1948 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714666500.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:14:44 Heat of formation + Delta-G solvation = 85.162280 kcal Electronic energy + Delta-G solvation = -27744.947947 eV Core-core repulsion = 23731.728516 eV Total energy + Delta-G solvation = -4013.219431 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -46.24182 -40.81004 -40.00560 -38.85837 -36.48272 -35.33739 -35.04600 -34.27491 -32.72619 -31.89814 -30.61434 -29.63159 -26.77702 -25.60156 -24.85165 -23.81699 -23.18019 -22.90400 -22.84554 -21.64145 -21.19696 -19.50683 -19.01477 -18.40457 -17.85659 -17.41001 -17.28362 -17.04282 -16.49960 -16.32533 -16.32208 -15.83156 -15.70310 -15.12658 -14.85734 -14.55447 -14.51136 -14.29949 -14.26505 -13.93261 -13.81208 -13.33713 -12.96230 -12.93040 -12.66778 -12.54052 -12.27522 -12.19413 -11.98645 -11.96258 -11.77004 -11.69607 -11.58652 -11.40786 -11.37835 -10.93771 -10.54447 -10.25927 -9.91161 -9.41928 -8.57125 -7.86469 -5.57817 -0.49653 0.07460 0.45849 1.05986 1.41452 1.44669 1.50521 1.64285 1.81770 1.93719 2.44757 2.72959 2.87266 3.11654 3.25517 3.38185 3.55059 3.71087 3.94362 3.99399 4.06465 4.11666 4.26447 4.30038 4.31547 4.34332 4.49883 4.51867 4.56737 4.63545 4.68960 4.71158 4.93942 4.94978 5.00317 5.08937 5.11746 5.20120 5.37010 5.44208 5.49784 5.54564 5.57758 5.58528 5.68459 5.98567 6.22002 6.41667 6.78581 6.90342 7.08878 7.74842 8.27523 9.04174 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.018080 B = 0.002016 C = 0.001938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.300514 B =13884.219577 C =14447.677016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C -0.029 4.029 3 Si 0.951 3.049 4 H -0.274 1.274 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.266 4.266 8 H 0.059 0.941 9 N -0.562 5.562 10 C 0.148 3.852 11 C 0.119 3.881 12 N -0.697 5.697 13 C 0.593 3.407 14 O -0.557 6.557 15 C -0.037 4.037 16 C -0.174 4.174 17 C 0.024 3.976 18 C -0.048 4.048 19 C -0.096 4.096 20 C -0.122 4.122 21 C -0.101 4.101 22 C -0.123 4.123 23 C -0.102 4.102 24 O 0.137 5.863 25 N -0.341 5.341 26 C 0.097 3.903 27 C -0.181 4.181 28 C -0.213 4.213 29 H 0.253 0.747 30 H 0.046 0.954 31 H 0.073 0.927 32 H 0.043 0.957 33 H 0.060 0.940 34 H 0.412 0.588 35 H 0.199 0.801 36 H 0.139 0.861 37 H 0.154 0.846 38 H 0.153 0.847 39 H 0.152 0.848 40 H 0.137 0.863 41 H 0.112 0.888 42 H 0.075 0.925 43 H 0.111 0.889 44 H 0.103 0.897 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.774 -8.569 25.670 27.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.228 4.228 3 Si 0.779 3.221 4 H -0.199 1.199 5 H -0.217 1.217 6 H -0.208 1.208 7 C -0.396 4.396 8 H 0.077 0.923 9 N -0.280 5.280 10 C 0.021 3.979 11 C -0.007 4.007 12 N -0.348 5.348 13 C 0.377 3.623 14 O -0.435 6.435 15 C -0.194 4.194 16 C -0.197 4.197 17 C -0.038 4.038 18 C -0.049 4.049 19 C -0.114 4.114 20 C -0.140 4.140 21 C -0.119 4.119 22 C -0.140 4.140 23 C -0.120 4.120 24 O 0.058 5.942 25 N -0.039 5.039 26 C -0.011 4.011 27 C -0.219 4.219 28 C -0.254 4.254 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.091 0.909 32 H 0.062 0.938 33 H 0.078 0.922 34 H 0.247 0.753 35 H 0.216 0.784 36 H 0.157 0.843 37 H 0.171 0.829 38 H 0.171 0.829 39 H 0.170 0.830 40 H 0.155 0.845 41 H 0.130 0.870 42 H 0.093 0.907 43 H 0.129 0.871 44 H 0.121 0.879 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -5.842 -8.314 24.577 26.595 hybrid contribution 0.589 1.128 -0.294 1.306 sum -5.253 -7.186 24.283 25.863 Atomic orbital electron populations 1.70145 1.06492 1.26651 1.51818 1.25866 0.95719 1.01392 0.99793 0.85615 0.78114 0.80060 0.78341 1.19949 1.21688 1.20825 1.19143 0.93316 0.86115 1.41027 0.92317 1.43324 1.51107 1.03902 1.29662 1.20844 0.91129 1.01998 0.83884 1.22029 0.92733 1.00527 0.85378 1.45879 1.13300 1.69800 1.05843 1.17154 0.86209 0.77037 0.81912 1.90759 1.16691 1.50847 1.85198 1.23276 0.91328 1.08287 0.96490 1.22775 1.01093 1.06023 0.89771 1.22822 0.87168 1.01900 0.91952 1.17710 0.96132 1.06424 0.84631 1.21393 0.98368 0.97857 0.93784 1.21435 0.98571 0.99558 0.94396 1.21774 0.92398 0.96214 1.01561 1.21448 1.00992 0.99270 0.92332 1.21520 0.95456 0.97979 0.97058 1.84824 1.34947 1.64066 1.10406 1.74159 1.10538 1.16770 1.02451 1.21574 1.02364 0.89966 0.87200 1.23037 0.92057 1.02386 1.04416 1.23247 0.97294 1.01128 1.03702 0.93814 0.93597 0.90945 0.93807 0.92197 0.75253 0.78395 0.84296 0.82877 0.82888 0.83036 0.84474 0.87026 0.90655 0.87084 0.87924 0.92520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.74 11.50 21.65 0.25 -51.49 16 2 C -0.03 -1.60 4.98 84.86 0.42 -1.18 16 3 Si 0.95 44.66 29.60 68.60 2.03 46.69 16 4 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 5 H -0.29 -13.63 7.11 99.48 0.71 -12.93 16 6 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 7 C -0.27 -14.27 8.47 84.03 0.71 -13.55 16 8 H 0.06 3.18 6.75 -2.91 -0.02 3.16 16 9 N -0.56 -27.36 2.75 -678.04 -1.86 -29.22 16 10 C 0.15 6.71 5.45 86.38 0.47 7.18 16 11 C 0.12 4.90 6.00 86.38 0.52 5.42 16 12 N -0.70 -25.39 5.55 -465.47 -2.59 -27.98 16 13 C 0.59 21.61 7.85 86.93 0.68 22.29 16 14 O -0.56 -23.23 16.95 -3.69 -0.06 -23.29 16 15 C -0.04 -1.12 7.18 42.86 0.31 -0.82 16 16 C -0.17 -4.21 10.34 22.83 0.24 -3.97 16 17 C 0.02 0.52 7.15 24.46 0.18 0.69 16 18 C -0.05 -0.77 5.87 -20.09 -0.12 -0.89 16 19 C -0.10 -1.22 9.58 22.52 0.22 -1.00 16 20 C -0.12 -1.07 10.03 22.23 0.22 -0.85 16 21 C -0.10 -0.76 10.04 22.32 0.22 -0.53 16 22 C -0.12 -1.10 10.03 22.23 0.22 -0.88 16 23 C -0.10 -1.34 9.73 22.52 0.22 -1.12 16 24 O 0.14 3.33 11.01 67.65 0.75 4.07 16 25 N -0.34 -9.89 11.81 -49.00 -0.58 -10.47 16 26 C 0.10 4.01 6.56 44.99 0.30 4.31 16 27 C -0.18 -6.89 9.80 30.59 0.30 -6.59 16 28 C -0.21 -8.45 10.36 30.59 0.32 -8.13 16 29 H 0.25 14.01 8.32 -92.71 -0.77 13.24 16 30 H 0.05 1.93 8.07 -2.38 -0.02 1.91 16 31 H 0.07 3.73 5.59 -2.39 -0.01 3.72 16 32 H 0.04 2.04 8.14 -2.39 -0.02 2.03 16 33 H 0.06 2.42 8.14 -2.38 -0.02 2.40 16 34 H 0.41 13.82 8.23 -92.71 -0.76 13.05 16 35 H 0.20 3.93 7.46 -2.91 -0.02 3.91 16 36 H 0.14 1.46 7.15 -2.91 -0.02 1.44 16 37 H 0.15 0.61 8.06 -2.91 -0.02 0.59 16 38 H 0.15 0.32 8.06 -2.91 -0.02 0.29 16 39 H 0.15 0.64 8.06 -2.91 -0.02 0.61 16 40 H 0.14 1.59 7.96 -2.92 -0.02 1.57 16 41 H 0.11 4.05 8.14 -2.39 -0.02 4.03 16 42 H 0.07 3.22 6.46 -2.39 -0.02 3.21 16 43 H 0.11 3.42 8.14 -2.39 -0.02 3.40 16 44 H 0.10 3.37 8.14 -2.39 -0.02 3.35 16 45 H 0.06 2.66 8.14 -2.39 -0.02 2.64 16 Total: -1.00 -67.61 388.94 3.63 -63.98 By element: Atomic # 1 Polarization: 27.06 SS G_CDS: 0.27 Total: 27.32 kcal Atomic # 6 Polarization: -5.04 SS G_CDS: 5.42 Total: 0.38 kcal Atomic # 7 Polarization: -114.39 SS G_CDS: -4.78 Total: -119.16 kcal Atomic # 8 Polarization: -19.90 SS G_CDS: 0.68 Total: -19.22 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Total: -67.61 3.63 -63.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714666500.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.143 kcal (2) G-P(sol) polarization free energy of solvation -67.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.980 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds